NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|887957039|emb|CLR14719|]
View 

pyruvate%2C phosphate dikinase PPDK [Mycobacterium tuberculosis]

Protein Classification

Rpn family recombination-promoting nuclease/putative transposase( domain architecture ID 11481828)

Rpn family recombination-promoting nuclease/putative transposase similar to Escherichia coli recombination-promoting nuclease RpnC which may be involved in RecA-independent DNA recombination

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PRK05878 PRK05878
pyruvate phosphate dikinase; Provisional
11-490 0e+00

pyruvate phosphate dikinase; Provisional


:

Pssm-ID: 235635 [Multi-domain]  Cd Length: 530  Bit Score: 868.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  11 PDGTLENAVVALDGGANYPREILGNKGHGIDMMRRHHLPVPPAFCITTEVGVRYLAAPESTIAAIWDDVLDRMSWLETET 90
Cdd:PRK05878   1 PAGTLENAVVLLDGGANQPRELLGGKGHGIDMMRRLGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  91 SCTFGRGPNPLLVSVRSGATQSMPGMMDTILDVGMTDAVERVLARP-GAADFAHDTRRRFTSMYRRIVGSAGPITDDPYA 169
Cdd:PRK05878  81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEgGDPDFAADTRRRFTEMYRRIVGSGSPPPDDPYE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 170 QLRASIEAVFASWNSPRAVAYRDHHGLDDQGGTAVVVQAMVFGNLTANSGAGVLSSRNPITGANEPFGEWLPGGQGDDVV 249
Cdd:PRK05878 161 QLRAAIEAVFASWNSPRAVAYRRHHGLDDDGGTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGEDVV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 250 SGLVAVAPITALRDQQPAVYDQLMAAARSLERMAGDVQEIEFTVEDSQLWLLQTRGAERSAQAAVRLALQLHHEGLIDDT 329
Cdd:PRK05878 241 SGLVDVAPITALRDEQPAVYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSAKRSAQAAVRLALQLHDEGLIDDA 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 330 ETLRRVTPTHIETLLRPSLQTETRLAAPLLAKGLPACPGVVSGTAYTEVDEALDAADRGEPVILVRDHTRPEDVMGMLAA 409
Cdd:PRK05878 321 EALRRVTPTHVETLLRPSLQPEARLAAPLLAKGLPACPGVVSGTAYTDVDEALDAADRGEPVILVRDHTRPDDVHGMLAA 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 410 QGIVTEVGGAASHAAVVSRELGRVAVVGCGPGVAAALAGKEITVDGYEGEVRQGVLALSAWSESDTPELRELADIAQRIS 489
Cdd:PRK05878 401 QGIVTEVGGATSHAAVVSRELGRVAVVGCGAGVAAALAGKEITVDGYEGEVRQGVLALSAWSESDTPELRELADIAQRIS 480

                 .
gi 887957039 490 S 490
Cdd:PRK05878 481 P 481
 
Name Accession Description Interval E-value
PRK05878 PRK05878
pyruvate phosphate dikinase; Provisional
11-490 0e+00

pyruvate phosphate dikinase; Provisional


Pssm-ID: 235635 [Multi-domain]  Cd Length: 530  Bit Score: 868.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  11 PDGTLENAVVALDGGANYPREILGNKGHGIDMMRRHHLPVPPAFCITTEVGVRYLAAPESTIAAIWDDVLDRMSWLETET 90
Cdd:PRK05878   1 PAGTLENAVVLLDGGANQPRELLGGKGHGIDMMRRLGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  91 SCTFGRGPNPLLVSVRSGATQSMPGMMDTILDVGMTDAVERVLARP-GAADFAHDTRRRFTSMYRRIVGSAGPITDDPYA 169
Cdd:PRK05878  81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEgGDPDFAADTRRRFTEMYRRIVGSGSPPPDDPYE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 170 QLRASIEAVFASWNSPRAVAYRDHHGLDDQGGTAVVVQAMVFGNLTANSGAGVLSSRNPITGANEPFGEWLPGGQGDDVV 249
Cdd:PRK05878 161 QLRAAIEAVFASWNSPRAVAYRRHHGLDDDGGTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGEDVV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 250 SGLVAVAPITALRDQQPAVYDQLMAAARSLERMAGDVQEIEFTVEDSQLWLLQTRGAERSAQAAVRLALQLHHEGLIDDT 329
Cdd:PRK05878 241 SGLVDVAPITALRDEQPAVYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSAKRSAQAAVRLALQLHDEGLIDDA 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 330 ETLRRVTPTHIETLLRPSLQTETRLAAPLLAKGLPACPGVVSGTAYTEVDEALDAADRGEPVILVRDHTRPEDVMGMLAA 409
Cdd:PRK05878 321 EALRRVTPTHVETLLRPSLQPEARLAAPLLAKGLPACPGVVSGTAYTDVDEALDAADRGEPVILVRDHTRPDDVHGMLAA 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 410 QGIVTEVGGAASHAAVVSRELGRVAVVGCGPGVAAALAGKEITVDGYEGEVRQGVLALSAWSESDTPELRELADIAQRIS 489
Cdd:PRK05878 401 QGIVTEVGGATSHAAVVSRELGRVAVVGCGAGVAAALAGKEITVDGYEGEVRQGVLALSAWSESDTPELRELADIAQRIS 480

                 .
gi 887957039 490 S 490
Cdd:PRK05878 481 P 481
pyru_phos_dikin TIGR01828
pyruvate, phosphate dikinase; This model represents pyruvate,phosphate dikinase, also called ...
19-488 1.86e-143

pyruvate, phosphate dikinase; This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes. [Energy metabolism, Other]


Pssm-ID: 273822 [Multi-domain]  Cd Length: 856  Bit Score: 432.54  E-value: 1.86e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039   19 VVALDGGANYPREILGNKGHGIDMMRRHHLPVPPAFCITTEVGVRYLAAPESTIAAIWDDVLDRMSWLETETSCTFGRGP 98
Cdd:TIGR01828   4 VYAFGEGNASMKNLLGGKGANLAEMTKLGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTGKKFGDTE 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039   99 NPLLVSVRSGATQSMPGMMDTILDVGMTD-AVERVLARPGAADFAHDTRRRFTSMYRRIV----------------GSAG 161
Cdd:TIGR01828  84 NPLLVSVRSGAAVSMPGMMDTILNLGLNDeTVEGLAKLTGNARFAYDSYRRFIQMFGDVVlgiphelfeqileamkEEKG 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  162 PITD-----------------------------DPYAQLRASIEAVFASWNSPRAVAYRDHHGLDDQGGTAVVVQAMVFG 212
Cdd:TIGR01828 164 VKLDtdltaddlkeliekykaiyreatgkpfpqDPKEQLELAIKAVFDSWNNPRAIVYRRLNDIPEDWGTAVNIQSMVFG 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  213 NLTANSGAGVLSSRNPITGANEPFGEWLPGGQGDDVVSGLVAVAPITALRDQQPAVYDQLMAAARSLERMAGDVQEIEFT 292
Cdd:TIGR01828 244 NMGETSGTGVAFTRNPSTGEKGLFGEFLINAQGEDVVAGIRTPQPITAMEADMPDVYKELLDIAEKLEGHYRDMQDIEFT 323
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  293 VEDSQLWLLQTRGAERSAQAAVRLALQLHHEGLIDDTETLRRVTPTHIETLLRPSLQTETRLAAplLAKGLPACPGVVSG 372
Cdd:TIGR01828 324 IERGKLYMLQTRNGKRTAKAAVRIAVDMVKEGLITEEEAIMRVEPKSLDQLLHPRFDPSALKTV--LAKGLPASPGAATG 401
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  373 TAYTEVDEALDAADRGEPVILVRDHTRPEDVMGMLAAQGIVTEVGGAASHAAVVSRELGRVAVVGCGP------------ 440
Cdd:TIGR01828 402 KIVFSAEDAVELAEKGKKVILVREETSPEDIEGMHVAEGILTARGGMTSHAAVVARGMGKCCVSGCEElkineeaktfti 481
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*....
gi 887957039  441 GVAAALAGKEITVDGYEGEVRQGVLALSAWSES-DTPELRELADIAQRI 488
Cdd:TIGR01828 482 GGRVFHEGDIISIDGSTGEIYLGEIPLIEPSVSgDFETIMDWADKIRKL 530
PpsA COG0574
Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and ...
19-461 2.67e-114

Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase is part of the Pathway/BioSystem: Gluconeogenesis


Pssm-ID: 440339 [Multi-domain]  Cd Length: 455  Bit Score: 344.51  E-value: 2.67e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  19 VVALDGGANYPREILGNKGHGIDMMRRHHLPVPPAFCITTEVGVRYLAAPESTI-------------------------- 72
Cdd:COG0574    5 VYWFAEGGADDVDLVGGKGANLGEMTRLGLPVPPGFTITTEAYRRFLEENGLEEeirelladldvddvdalaeasaeire 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  73 --------AAIWDDVLDRMSWLETEtsctFGRGpnpLLVSVRSGATQ------SMPGMMDTILDVgmtdavervlarpga 138
Cdd:COG0574   85 lileaplpEELEEEILAAYAKLEEK----FGED---LLVAVRSSATAedlpdaSFAGQMDTVLNV--------------- 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 139 adfahdtrrrftsmyrrivgsagpitdDPYAQLRASIEAVFASWNSPRAVAYRDHHGLD-DQGGTAVVVQAMVFGNLtan 217
Cdd:COG0574  143 ---------------------------NGNEQLLEAIKAVFASLFTDRAIAYRRHNGIDhDDVGTAVNVQAMVFGNM--- 192
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 218 SGAGVLSSRNPITGAN-EPFGEWLpGGQGDDVVSGLVAVAPIT-------------------------------ALRDQQ 265
Cdd:COG0574  193 SASGVMFTRDPSTGEKdVVYIEAL-NGLGEDVVAGIVTPDPYYvdkptilertlgskaikmvydggtvevpvppEERNRP 271
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 266 ---PAVYDQLMAAARSLERMAGDVQEIEFTVEDSQLWLLQTRgAErsaqaAVrlalqlhHEGLIDDtETLRRVTPTHIET 342
Cdd:COG0574  272 sltDEEYLELARIALRLEKHYGDPQDIEWAIDDGKLYILQTR-PI-----TV-------LEGLITK-EALLRVDPAQLDQ 337
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 343 LLRPSLQTETRLAAPLLAKGLPACPGVVSGTAYteVDEALDAADRGEP-VILVRDHTRPEDVMGMLAAQGIVTEVGGAAS 421
Cdd:COG0574  338 LLHPRFDPKAKEEGEVLAKGLPASPGAASGKVV--FIADEAELARFQEgVILVRDETDPDDVPGMKAAAGIVTERGGMTS 415
                        490       500       510       520
                 ....*....|....*....|....*....|....*....|
gi 887957039 422 HAAVVSRELGRVAVVGCGPGVAAALAGKEITVDGYEGEVR 461
Cdd:COG0574  416 HAAIVARELGIPAVVGCGDATRVLKDGDEITVDGTTGEVK 455
PPDK_N pfam01326
Pyruvate phosphate dikinase, AMP/ATP-binding domain; This enzyme catalyzes the reversible ...
30-320 7.66e-32

Pyruvate phosphate dikinase, AMP/ATP-binding domain; This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). The N-terminal domain has been shown to be the AMP/ATP-binding domain.


Pssm-ID: 426201 [Multi-domain]  Cd Length: 326  Bit Score: 124.63  E-value: 7.66e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039   30 REILGNKGHGI-DMMRRHHLPVPPAFCITTEVGVRYLAapESTIAAIWDDVLDRMSWLETETSCTFGR------------ 96
Cdd:pfam01326   1 VNLVGGKGANLgEMLNDAGIPVPPGFAITADAYREFLE--ENGLREKIDELLKDLDVDDVDELREASKeirqlilsaplp 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039   97 ------------------GPNPLLVSVRSGAT------QSMPGMMDTILDVGMTDAVervlarpgaadfahdtrrrftsm 152
Cdd:pfam01326  79 eeleeaireayeelgkkfGDEPLPVAVRSSATaedlpdASFAGQQDTYLNVGGNDEV----------------------- 135
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  153 yrrivgsagpitddpyaqLRAsIEAVFASWNSPRAVAYRDHHGLDDQG-GTAVVVQAMVFGNltansGAGVLSSRNPITG 231
Cdd:pfam01326 136 ------------------LEA-IKAVFASLFNDRAIAYRREKGIDHEDvALAVGVQRMVRSD-----ASGVMFSRDPETG 191
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  232 ANepfGEWL---PGGQGDDVVSGLV-----------------------------------AVAPITALRDQQPAVYD--- 270
Cdd:pfam01326 192 FR---DEVLinaSWGLGEAVVQGRVtpdefyvfkptleilrrtigekeikmvydeggegtKEVEVPEEKRERFSLSDeev 268
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 887957039  271 -QLMAAARSLERMAGDVQEIEFTVE--DSQLWLLQTR-----GAERSAQAAVRLALQL 320
Cdd:pfam01326 269 lELARIAKKIEKHYGTPMDIEWAIDgrDGKLYILQARpetvwSEAMEKIAAEILEEGL 326
 
Name Accession Description Interval E-value
PRK05878 PRK05878
pyruvate phosphate dikinase; Provisional
11-490 0e+00

pyruvate phosphate dikinase; Provisional


Pssm-ID: 235635 [Multi-domain]  Cd Length: 530  Bit Score: 868.29  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  11 PDGTLENAVVALDGGANYPREILGNKGHGIDMMRRHHLPVPPAFCITTEVGVRYLAAPESTIAAIWDDVLDRMSWLETET 90
Cdd:PRK05878   1 PAGTLENAVVLLDGGANQPRELLGGKGHGIDMMRRLGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  91 SCTFGRGPNPLLVSVRSGATQSMPGMMDTILDVGMTDAVERVLARP-GAADFAHDTRRRFTSMYRRIVGSAGPITDDPYA 169
Cdd:PRK05878  81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEgGDPDFAADTRRRFTEMYRRIVGSGSPPPDDPYE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 170 QLRASIEAVFASWNSPRAVAYRDHHGLDDQGGTAVVVQAMVFGNLTANSGAGVLSSRNPITGANEPFGEWLPGGQGDDVV 249
Cdd:PRK05878 161 QLRAAIEAVFASWNSPRAVAYRRHHGLDDDGGTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGEDVV 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 250 SGLVAVAPITALRDQQPAVYDQLMAAARSLERMAGDVQEIEFTVEDSQLWLLQTRGAERSAQAAVRLALQLHHEGLIDDT 329
Cdd:PRK05878 241 SGLVDVAPITALRDEQPAVYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSAKRSAQAAVRLALQLHDEGLIDDA 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 330 ETLRRVTPTHIETLLRPSLQTETRLAAPLLAKGLPACPGVVSGTAYTEVDEALDAADRGEPVILVRDHTRPEDVMGMLAA 409
Cdd:PRK05878 321 EALRRVTPTHVETLLRPSLQPEARLAAPLLAKGLPACPGVVSGTAYTDVDEALDAADRGEPVILVRDHTRPDDVHGMLAA 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 410 QGIVTEVGGAASHAAVVSRELGRVAVVGCGPGVAAALAGKEITVDGYEGEVRQGVLALSAWSESDTPELRELADIAQRIS 489
Cdd:PRK05878 401 QGIVTEVGGATSHAAVVSRELGRVAVVGCGAGVAAALAGKEITVDGYEGEVRQGVLALSAWSESDTPELRELADIAQRIS 480

                 .
gi 887957039 490 S 490
Cdd:PRK05878 481 P 481
pyru_phos_dikin TIGR01828
pyruvate, phosphate dikinase; This model represents pyruvate,phosphate dikinase, also called ...
19-488 1.86e-143

pyruvate, phosphate dikinase; This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes. [Energy metabolism, Other]


Pssm-ID: 273822 [Multi-domain]  Cd Length: 856  Bit Score: 432.54  E-value: 1.86e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039   19 VVALDGGANYPREILGNKGHGIDMMRRHHLPVPPAFCITTEVGVRYLAAPESTIAAIWDDVLDRMSWLETETSCTFGRGP 98
Cdd:TIGR01828   4 VYAFGEGNASMKNLLGGKGANLAEMTKLGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTGKKFGDTE 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039   99 NPLLVSVRSGATQSMPGMMDTILDVGMTD-AVERVLARPGAADFAHDTRRRFTSMYRRIV----------------GSAG 161
Cdd:TIGR01828  84 NPLLVSVRSGAAVSMPGMMDTILNLGLNDeTVEGLAKLTGNARFAYDSYRRFIQMFGDVVlgiphelfeqileamkEEKG 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  162 PITD-----------------------------DPYAQLRASIEAVFASWNSPRAVAYRDHHGLDDQGGTAVVVQAMVFG 212
Cdd:TIGR01828 164 VKLDtdltaddlkeliekykaiyreatgkpfpqDPKEQLELAIKAVFDSWNNPRAIVYRRLNDIPEDWGTAVNIQSMVFG 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  213 NLTANSGAGVLSSRNPITGANEPFGEWLPGGQGDDVVSGLVAVAPITALRDQQPAVYDQLMAAARSLERMAGDVQEIEFT 292
Cdd:TIGR01828 244 NMGETSGTGVAFTRNPSTGEKGLFGEFLINAQGEDVVAGIRTPQPITAMEADMPDVYKELLDIAEKLEGHYRDMQDIEFT 323
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  293 VEDSQLWLLQTRGAERSAQAAVRLALQLHHEGLIDDTETLRRVTPTHIETLLRPSLQTETRLAAplLAKGLPACPGVVSG 372
Cdd:TIGR01828 324 IERGKLYMLQTRNGKRTAKAAVRIAVDMVKEGLITEEEAIMRVEPKSLDQLLHPRFDPSALKTV--LAKGLPASPGAATG 401
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  373 TAYTEVDEALDAADRGEPVILVRDHTRPEDVMGMLAAQGIVTEVGGAASHAAVVSRELGRVAVVGCGP------------ 440
Cdd:TIGR01828 402 KIVFSAEDAVELAEKGKKVILVREETSPEDIEGMHVAEGILTARGGMTSHAAVVARGMGKCCVSGCEElkineeaktfti 481
                         490       500       510       520
                  ....*....|....*....|....*....|....*....|....*....
gi 887957039  441 GVAAALAGKEITVDGYEGEVRQGVLALSAWSES-DTPELRELADIAQRI 488
Cdd:TIGR01828 482 GGRVFHEGDIISIDGSTGEIYLGEIPLIEPSVSgDFETIMDWADKIRKL 530
PpsA COG0574
Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and ...
19-461 2.67e-114

Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase is part of the Pathway/BioSystem: Gluconeogenesis


Pssm-ID: 440339 [Multi-domain]  Cd Length: 455  Bit Score: 344.51  E-value: 2.67e-114
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  19 VVALDGGANYPREILGNKGHGIDMMRRHHLPVPPAFCITTEVGVRYLAAPESTI-------------------------- 72
Cdd:COG0574    5 VYWFAEGGADDVDLVGGKGANLGEMTRLGLPVPPGFTITTEAYRRFLEENGLEEeirelladldvddvdalaeasaeire 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  73 --------AAIWDDVLDRMSWLETEtsctFGRGpnpLLVSVRSGATQ------SMPGMMDTILDVgmtdavervlarpga 138
Cdd:COG0574   85 lileaplpEELEEEILAAYAKLEEK----FGED---LLVAVRSSATAedlpdaSFAGQMDTVLNV--------------- 142
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 139 adfahdtrrrftsmyrrivgsagpitdDPYAQLRASIEAVFASWNSPRAVAYRDHHGLD-DQGGTAVVVQAMVFGNLtan 217
Cdd:COG0574  143 ---------------------------NGNEQLLEAIKAVFASLFTDRAIAYRRHNGIDhDDVGTAVNVQAMVFGNM--- 192
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 218 SGAGVLSSRNPITGAN-EPFGEWLpGGQGDDVVSGLVAVAPIT-------------------------------ALRDQQ 265
Cdd:COG0574  193 SASGVMFTRDPSTGEKdVVYIEAL-NGLGEDVVAGIVTPDPYYvdkptilertlgskaikmvydggtvevpvppEERNRP 271
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 266 ---PAVYDQLMAAARSLERMAGDVQEIEFTVEDSQLWLLQTRgAErsaqaAVrlalqlhHEGLIDDtETLRRVTPTHIET 342
Cdd:COG0574  272 sltDEEYLELARIALRLEKHYGDPQDIEWAIDDGKLYILQTR-PI-----TV-------LEGLITK-EALLRVDPAQLDQ 337
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 343 LLRPSLQTETRLAAPLLAKGLPACPGVVSGTAYteVDEALDAADRGEP-VILVRDHTRPEDVMGMLAAQGIVTEVGGAAS 421
Cdd:COG0574  338 LLHPRFDPKAKEEGEVLAKGLPASPGAASGKVV--FIADEAELARFQEgVILVRDETDPDDVPGMKAAAGIVTERGGMTS 415
                        490       500       510       520
                 ....*....|....*....|....*....|....*....|
gi 887957039 422 HAAVVSRELGRVAVVGCGPGVAAALAGKEITVDGYEGEVR 461
Cdd:COG0574  416 HAAIVARELGIPAVVGCGDATRVLKDGDEITVDGTTGEVK 455
PPDK_N pfam01326
Pyruvate phosphate dikinase, AMP/ATP-binding domain; This enzyme catalyzes the reversible ...
30-320 7.66e-32

Pyruvate phosphate dikinase, AMP/ATP-binding domain; This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). The N-terminal domain has been shown to be the AMP/ATP-binding domain.


Pssm-ID: 426201 [Multi-domain]  Cd Length: 326  Bit Score: 124.63  E-value: 7.66e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039   30 REILGNKGHGI-DMMRRHHLPVPPAFCITTEVGVRYLAapESTIAAIWDDVLDRMSWLETETSCTFGR------------ 96
Cdd:pfam01326   1 VNLVGGKGANLgEMLNDAGIPVPPGFAITADAYREFLE--ENGLREKIDELLKDLDVDDVDELREASKeirqlilsaplp 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039   97 ------------------GPNPLLVSVRSGAT------QSMPGMMDTILDVGMTDAVervlarpgaadfahdtrrrftsm 152
Cdd:pfam01326  79 eeleeaireayeelgkkfGDEPLPVAVRSSATaedlpdASFAGQQDTYLNVGGNDEV----------------------- 135
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  153 yrrivgsagpitddpyaqLRAsIEAVFASWNSPRAVAYRDHHGLDDQG-GTAVVVQAMVFGNltansGAGVLSSRNPITG 231
Cdd:pfam01326 136 ------------------LEA-IKAVFASLFNDRAIAYRREKGIDHEDvALAVGVQRMVRSD-----ASGVMFSRDPETG 191
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  232 ANepfGEWL---PGGQGDDVVSGLV-----------------------------------AVAPITALRDQQPAVYD--- 270
Cdd:pfam01326 192 FR---DEVLinaSWGLGEAVVQGRVtpdefyvfkptleilrrtigekeikmvydeggegtKEVEVPEEKRERFSLSDeev 268
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 887957039  271 -QLMAAARSLERMAGDVQEIEFTVE--DSQLWLLQTR-----GAERSAQAAVRLALQL 320
Cdd:pfam01326 269 lELARIAKKIEKHYGTPMDIEWAIDgrDGKLYILQARpetvwSEAMEKIAAEILEEGL 326
PRK06464 PRK06464
phosphoenolpyruvate synthase; Validated
168-488 2.61e-23

phosphoenolpyruvate synthase; Validated


Pssm-ID: 235809 [Multi-domain]  Cd Length: 795  Bit Score: 103.67  E-value: 2.61e-23
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 168 YAQLRASIEAVFASWNSPRAVAYRDHHGLDDQG-GTAVVVQAMVFGNLTAnsgAGVLSSRNPITGA-NEPF--GEWlpgG 243
Cdd:PRK06464 150 IDDVLEAVKECFASLFTDRAISYRVHQGFDHFKvALSAGVQKMVRSDLAA---SGVMFTLDTESGFrDVVFitASW---G 223
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 244 QGDDVVSGlvAVAPIT------ALRDQQPA-------------VYD----------------------------QLMAAA 276
Cdd:PRK06464 224 LGEMVVQG--AVNPDEfyvhkpTLKAGKPAivrrtlgskkikmVYDdggehgvktvdvpeeernrfsltdeevlELAKQA 301
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 277 RSLERMAGDVQEIEFTVE--DSQLWLLQTRG----AERSAQAAVRLALQLHhegliddtetlrrvtpthietllrpslqt 350
Cdd:PRK06464 302 VIIEKHYGRPMDIEWAKDgdDGKLYIVQARPetvkSRKEANVLERYKLKGQ----------------------------- 352
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 351 etrlaAPLLAKGLPACPGVVSGTAY--TEVDEaLDAADRGEpvILVRDHTRPEDVMGMLAAQGIVTEVGGAASHAAVVSR 428
Cdd:PRK06464 353 -----GKVLVEGRAIGPGIGSGKVRviLDISE-MDKVQPGD--VLVTDMTDPDWEPVMKRASAIVTNRGGRTCHAAIIAR 424
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 887957039 429 ELGRVAVVGCGPGVAAALAGKEITV---DGYEGEVRQGVLAlsawSESDTPELRELADIAQRI 488
Cdd:PRK06464 425 ELGIPAVVGTGNATEVLKDGQEVTVscaEGDTGYVYEGLLE----FEVEEVSLEEMPETPTKI 483
PEP-utilizers pfam00391
PEP-utilizing enzyme, mobile domain; This domain is a "swivelling" beta/beta/alpha domain ...
389-458 2.19e-22

PEP-utilizing enzyme, mobile domain; This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it.


Pssm-ID: 459796 [Multi-domain]  Cd Length: 73  Bit Score: 90.55  E-value: 2.19e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  389 EPVILVRDHTRPEDVMGMLAAQGIVTEVGGAASHAAVVSRELGRVAVVGCGPGVAAALAGKEITVDGYEG 458
Cdd:pfam00391   4 EGVILVAPDTTPSDTAGLDKAAGIVTERGGMTSHAAIVARELGIPAVVGVGDATILLKEGDLVTVDGSTG 73
PRK06241 PRK06241
phosphoenolpyruvate synthase; Validated
32-304 2.14e-17

phosphoenolpyruvate synthase; Validated


Pssm-ID: 235751 [Multi-domain]  Cd Length: 871  Bit Score: 85.33  E-value: 2.14e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039  32 ILGNKGHGIDMMRRHHLPVPPAFCITTEVGVRYLAapESTIAAIWDDVLDRMSWLETETSCTFGRgpnpllvSVRSGatq 111
Cdd:PRK06241  18 LVGGKGANLGELSRAGIPVPEGFCVTTEAYKKFLE--QNEEFDALLDQLSALKLEDREQIGEISA-------KIREV--- 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 112 smpgMMDTILDVGMTDAVERVLARPGA-----------------ADFA--HDTrrrftsmYRRIVGSAgpitddpyaQLR 172
Cdd:PRK06241  86 ----IEAIEIPEDIVEAIAAALSKFGEdhayavrssataedlptASFAgqQDT-------YLNVIGKD---------AIL 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 173 ASIEAVFASWNSPRAVAYRDHHGLD-DQGGTAVVVQAMVFGNLtansgAGVLSSRNPITGANE------PFgewlpgGQG 245
Cdd:PRK06241 146 QHIRKCWASLFTERAVIYRIQNGFDhRKVYMSVVVQKMVFPEA-----SGIMFTADPVTGNRKvlsidaSF------GLG 214
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 246 DDVVSGLV-------------------------AVA-------PITALRDQQPAVYD----QLMAAARSLERMAGDVQEI 289
Cdd:PRK06241 215 EALVSGLVsadtykvregkiidktiatkklaiyALKeggtetkEIEPEQQKSQTLTDeqilELARLGRKIEAHFGCPQDI 294
                        330
                 ....*....|....*
gi 887957039 290 EFTVEDSQLWLLQTR 304
Cdd:PRK06241 295 EWCLADGTFYILQSR 309
PRK08296 PRK08296
hypothetical protein; Provisional
335-461 5.03e-13

hypothetical protein; Provisional


Pssm-ID: 181362  Cd Length: 603  Bit Score: 71.22  E-value: 5.03e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 335 VTPTHIETLLRPSLQTETRLaapllaKGLPACPGVVSGTA--YTEVDEaLDAADRGEpvILVRDHTRPEDVMGMLAAQGI 412
Cdd:PRK08296 481 ITTERVQDWLGLEDGAEGEL------KGFAASPGVVEGPArvIRSADE-LSEVQEGE--ILVCPVTSPSWAPIFAKIKAT 551
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 887957039 413 VTEVGGAASHAAVVSRELGRVAVVGCGPGVAAALAGKEITVDGYEGEVR 461
Cdd:PRK08296 552 VTDIGGVMSHAAIVCREYGLPAVVGTGNATKRIKTGQRLRVDGTKGVVT 600
PRK06241 PRK06241
phosphoenolpyruvate synthase; Validated
362-461 2.04e-12

phosphoenolpyruvate synthase; Validated


Pssm-ID: 235751 [Multi-domain]  Cd Length: 871  Bit Score: 69.53  E-value: 2.04e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 362 GLPACPGVVSGTA--YTEVDEALDAADRgepvILVRDHTRPEDVMGMLAAQGIVTEVGGAASHAAVVSRELGRVAVVGCg 439
Cdd:PRK06241 770 GLPVSSGVVEGRArvILNPEDADLEKGD----ILVTAFTDPGWTPLFVSIKGLVTEVGGLMTHGAVIAREYGIPAVVGV- 844
                         90       100
                 ....*....|....*....|...
gi 887957039 440 PGVAAALA-GKEITVDGYEGEVR 461
Cdd:PRK06241 845 ENATKLIKdGQRIRVDGTEGYVE 867
PRK05865 PRK05865
sugar epimerase family protein;
335-473 8.47e-09

sugar epimerase family protein;


Pssm-ID: 235630 [Multi-domain]  Cd Length: 854  Bit Score: 58.13  E-value: 8.47e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 335 VTPTHIETLLRPSLQTETRLAAPLLAKGLPACPGVVSGTAYTEVDEALDAADRGEpvILVRDHTRPEDVMGMLAAQGIVT 414
Cdd:PRK05865 711 VPPTVFSGSWEPSPSSAAALAAGDTLRGVGVCGGRVRGRVRIVRPETIDDLQPGE--ILVAEVTDVGYTAAFCYAAAVVT 788
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 887957039 415 EVGGAASHAAVVSRELGRVAVVGCGPGVAAALAGKEITVDGYEGEVRqgVLALSAWSES 473
Cdd:PRK05865 789 ELGGPMSHAAVVAREFGFPCVVDAQGATRFLPPGALVEVDGATGEIH--VVELASEDGP 845
PtsA COG1080
Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate ...
380-460 8.64e-09

Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism];


Pssm-ID: 440698 [Multi-domain]  Cd Length: 571  Bit Score: 57.78  E-value: 8.64e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 380 EALDAADRGEPVILVRDHTRPEDVMGMLAAQ--GIVTEVGGAASHAAVVSRELGRVAVVGCGPGVAAALAGKEITVDGYE 457
Cdd:COG1080  144 EAPDLSDLPEPVILVAHDLTPSDTAQLDPSRvaGFVTDLGGRTSHTAILARSLGIPAVVGLGDALLLVKDGDLVIVDGDA 223

                 ...
gi 887957039 458 GEV 460
Cdd:COG1080  224 GVV 226
PykA2 COG3848
Phosphohistidine swiveling domain of PEP-utilizing enzymes [Signal transduction mechanisms];
359-461 1.39e-08

Phosphohistidine swiveling domain of PEP-utilizing enzymes [Signal transduction mechanisms];


Pssm-ID: 443058  Cd Length: 321  Bit Score: 56.45  E-value: 1.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 359 LAKGLPACPGVVSGTAY--TEVDEALDAADRGEpvILVRDHTRpEDVMGMLA-AQGIVTEVGGAASHAAVVSRELGRVAV 435
Cdd:COG3848  212 LAKGQGIGRGSVTGKAVvaRSAEEALEKFEEGD--ILVVPSTD-AEFVPAIEkAAGIITEEGGLTSHAAIVGLELGIPVI 288
                         90       100       110
                 ....*....|....*....|....*....|..
gi 887957039 436 VGCgPGVAAALA-GKEITVDG-----YEGEVR 461
Cdd:COG3848  289 VGA-EGATEILKdGQVVTVDAergvvYRGAVN 319
PRK06354 PRK06354
pyruvate kinase; Provisional
358-463 1.13e-07

pyruvate kinase; Provisional


Pssm-ID: 235784 [Multi-domain]  Cd Length: 590  Bit Score: 54.16  E-value: 1.13e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 358 LLAKGLPACPGVVSGTAYTeVDEALDAADRGEPVILVRDHTRPEDVMGMLAAQGIVTEVGGAASHAAVVSRELGRVAVVg 437
Cdd:PRK06354 481 VVAKGQGIGRKSVSGKARV-AKTAAEVAKVNEGDILVTPSTDADMIPAIEKAAAIITEEGGLTSHAAVVGLRLGIPVIV- 558
                         90       100       110
                 ....*....|....*....|....*....|
gi 887957039 438 cgpGVAAALA----GKEITVDGYEGEVRQG 463
Cdd:PRK06354 559 ---GVKNATSlikdGQIITVDAARGVVYSG 585
PRK11061 PRK11061
phosphoenolpyruvate--protein phosphotransferase;
379-460 8.40e-05

phosphoenolpyruvate--protein phosphotransferase;


Pssm-ID: 182937 [Multi-domain]  Cd Length: 748  Bit Score: 45.37  E-value: 8.40e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 887957039 379 DEALDAADRGEPVILVRDhtrpEDVMGMLAA------QGIVTEVGGAASHAAVVSRELGRVAVVGCG--PgvaAALAGKE 450
Cdd:PRK11061 311 DSEQGPNAWPERFILVAD----ELTATLLAElpqdrlAGVVVRDGAANSHAAILVRALGIPTVMGADiqP---SLLHQRL 383
                         90
                 ....*....|
gi 887957039 451 ITVDGYEGEV 460
Cdd:PRK11061 384 LIVDGYRGEL 393
PRK11377 PRK11377
dihydroxyacetone kinase subunit M; Provisional
388-454 7.26e-04

dihydroxyacetone kinase subunit M; Provisional


Pssm-ID: 183108 [Multi-domain]  Cd Length: 473  Bit Score: 42.04  E-value: 7.26e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 887957039 388 GEPVILVRDHTRPEDVMGMLAAQ--GIVTEVGGAASHAAVVSRELGRVAVVGCGPGVAAALAGKEITVD 454
Cdd:PRK11377 395 NSPTILLAENIYPSTVLQLDPAVvkGICLSAGSPLSHSAIIARELGIGWICQQGEKLYAIQPEETLTLD 463
PRK05849 PRK05849
hypothetical protein; Provisional
411-439 2.48e-03

hypothetical protein; Provisional


Pssm-ID: 235623 [Multi-domain]  Cd Length: 783  Bit Score: 40.35  E-value: 2.48e-03
                         10        20
                 ....*....|....*....|....*....
gi 887957039 411 GIVTEVGGAASHAAVVSRELGRVAVVGCG 439
Cdd:PRK05849 730 GLITCYGGANSHMAIRAAELGLPAVIGVG 758
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH