|
Name |
Accession |
Description |
Interval |
E-value |
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-324 |
8.50e-175 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 486.87 E-value: 8.50e-175
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKIskLSNGEVIFDGKRIDTLNEK 84
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPPG--ITSGEILFDGEDLLKLSEK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPHQLSGGMRQR 164
Cdd:COG0444 79 ELRKIRGREIQMIFQDPMTSLNPVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLPDPERRLDRYPHELSGGMRQR 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 165 VMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:COG0444 159 VMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEEL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 245 LHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPSIQAFHvNKCRFANRCNKKMDICNNQSPKM-HVCEDVIVRCHLYKN 323
Cdd:COG0444 239 FENPRHPYTRALLSSIPRLDPDGRRLIPIPGEPPSLLNPP-SGCRFHPRCPYAMDRCREEEPPLrEVGPGHRVACHLYEE 317
|
.
gi 777211855 324 E 324
Cdd:COG0444 318 E 318
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-262 |
6.54e-138 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 401.37 E-value: 6.54e-138
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSnGEVIFDGKRIDT 80
Cdd:COG4172 2 MSMPLLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPAAHPS-GSILFDGQDLLG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPHQLSGG 160
Cdd:COG4172 81 LSERELRRIRGNRIAMIFQEPMTSLNPLHTIGKQIAEVLRLHRGLSGAAARARALELLERVGIPDPERRLDAYPHQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 161 MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG 240
Cdd:COG4172 161 QRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGP 240
|
250 260
....*....|....*....|..
gi 777211855 241 IKEILHNPKHPYTQKLLSTIPK 262
Cdd:COG4172 241 TAELFAAPQHPYTRKLLAAEPR 262
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
5-239 |
4.89e-113 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 326.77 E-value: 4.89e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEK 84
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-----KPTSGSIIFDGKDLLKLSRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLdIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKdLLKKVGIARQDEILNSYPHQLSGGMRQR 164
Cdd:cd03257 76 LRK-IRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-LLLLVGVGLPEEVLNRYPHELSGGQRQR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 165 VMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:cd03257 154 VAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-306 |
7.58e-112 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 327.84 E-value: 7.58e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPE--KISklsnGEVIFDGKRI 78
Cdd:PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAAngRIG----GSATFNGREI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 79 DTLNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPHQLS 158
Cdd:PRK09473 84 LNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFS 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 159 GGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEF 238
Cdd:PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 239 GGIKEILHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPSIqaFHVNK-CRFANRCNKKMDICNNQSP 306
Cdd:PRK09473 244 GNARDVFYQPSHPYSIGLLNAVPRLDAEGESLLTIPGNPPNL--LRLPKgCPFQPRCPHAMEICSSAPP 310
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
5-319 |
7.86e-107 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 314.76 E-value: 7.86e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLL--PEKIS--KLSngeviFDGKRIDT 80
Cdd:PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIdyPGRVMaeKLE-----FNGQDLQR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPHQLSGG 160
Cdd:PRK11022 78 ISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGG 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 161 MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG 240
Cdd:PRK11022 158 MSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGK 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 241 IKEILHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPSiQAFHVNKCRFANRCNKKMDICNNQSPKMHVCEDVIVRCH 319
Cdd:PRK11022 238 AHDIFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPG-KYDRPNGCLLNPRCPYATDRCRAEEPALNMLAGRQSKCH 315
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
4-263 |
2.22e-106 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 320.31 E-value: 2.22e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 4 VLLEVKDLETSLKIN-NEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLN 82
Cdd:COG1123 259 PLLEVRNLSKRYPVRgKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLLR-----PTSGSILFDGKDLTKLS 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 83 EKQLLDIRGnDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARqdEILNSYPHQLSGGMR 162
Cdd:COG1123 334 RRSLRELRR-RVQMVFQDPYSSLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGLPP--DLADRYPHELSGGQR 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 163 QRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIK 242
Cdd:COG1123 411 QRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGPTE 490
|
250 260
....*....|....*....|.
gi 777211855 243 EILHNPKHPYTQKLLSTIPKL 263
Cdd:COG1123 491 EVFANPQHPYTRALLAAVPSL 511
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-321 |
3.46e-103 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 305.50 E-value: 3.46e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSLKINNEWLAT-------VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIF 73
Cdd:COG4608 3 MAEPLLEVRDLKKHFPVRGGLFGRtvgvvkaVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEE-----PTSGEILF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 74 DGKRIDTLNEKQLLDIRgNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARqdEILNSY 153
Cdd:COG4608 78 DGQDITGLSGRELRPLR-RRMQMVFQDPYASLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLRP--EHADRY 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 154 PHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAG 233
Cdd:COG4608 155 PHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYLG 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 234 QIVEFGGIKEILHNPKHPYTQKLLSTIPKLKEEQKRlETI--EGIVPSiqafHVNK---CRFANRCNKKMDICNNQSPKM 308
Cdd:COG4608 235 KIVEIAPRDELYARPLHPYTQALLSAVPVPDPERRR-ERIvlEGDVPS----PLNPpsgCRFHTRCPYAQDRCATEEPPL 309
|
330
....*....|....
gi 777211855 309 H-VCEDVIVRCHLY 321
Cdd:COG4608 310 ReVGPGHQVACHLA 323
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
5-272 |
3.11e-97 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 296.81 E-value: 3.11e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLetSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKlsNGEVIFDGKRIDTLNEK 84
Cdd:COG1123 4 LLEVRDL--SVRYPGGDVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGRI--SGEVLLDGRDLLELSEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 qlldIRGNDIAMIFQEPMTALNPVfTIKNQLVESIKSHKKISKkEANNLAKDLLKKVGIARqdeILNSYPHQLSGGMRQR 164
Cdd:COG1123 80 ----LRGRRIGMVFQDPMTQLNPV-TVGDQIAEALENLGLSRA-EARARVLELLEAVGLER---RLDRYPHQLSGGQRQR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 165 VMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:COG1123 151 VAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEEI 230
|
250 260
....*....|....*....|....*...
gi 777211855 245 LHNPkhpytqKLLSTIPKLKEEQKRLET 272
Cdd:COG1123 231 LAAP------QALAAVPRLGAARGRAAP 252
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-265 |
8.10e-94 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 290.99 E-value: 8.10e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 2 NNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGEVIFD--GKRID 79
Cdd:PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRrrSRQVI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 80 TLNE---KQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPHQ 156
Cdd:PRK10261 89 ELSEqsaAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 157 LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248
|
250 260
....*....|....*....|....*....
gi 777211855 237 EFGGIKEILHNPKHPYTQKLLSTIPKLKE 265
Cdd:PRK10261 249 ETGSVEQIFHAPQHPYTRALLAAVPQLGA 277
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
4-263 |
8.23e-90 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 278.11 E-value: 8.23e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 4 VLLEVKDLETSLKINNEWLAT-------VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekisklSNGEVIFDGK 76
Cdd:COG4172 274 PLLEARDLKVWFPIKRGLFRRtvghvkaVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP------SEGEIRFDGQ 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 77 RIDTLNEKQLLDIRgNDIAMIFQEPMTALNPVFTIKnQLVE--SIKSHKKISKKEANNLAKDLLKKVGIARqdEILNSYP 154
Cdd:COG4172 348 DLDGLSRRALRPLR-RRMQVVFQDPFGSLSPRMTVG-QIIAegLRVHGPGLSAAERRARVAEALEEVGLDP--AARHRYP 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 155 HQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQ 234
Cdd:COG4172 424 HEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGK 503
|
250 260
....*....|....*....|....*....
gi 777211855 235 IVEFGGIKEILHNPKHPYTQKLLSTIPKL 263
Cdd:COG4172 504 VVEQGPTEQVFDAPQHPYTRALLAAAPLL 532
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
2-318 |
2.10e-88 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 268.11 E-value: 2.10e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 2 NNVLLEVKDLETSLKI--NNEW-------LATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVI 72
Cdd:PRK15079 5 KKVLLEVADLKVHFDIkdGKQWfwqppktLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV-----KATDGEVA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 73 FDGKRIDTLNEKQLLDIRgNDIAMIFQEPMTALNPVFTIKNQLVESIKSHK-KISKKEANNLAKDLLKKVGIARQdeILN 151
Cdd:PRK15079 80 WLGKDLLGMKDDEWRAVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHpKLSRQEVKDRVKAMMLKVGLLPN--LIN 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 152 SYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMY 231
Cdd:PRK15079 157 RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMY 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 232 AGQIVEFGGIKEILHNPKHPYTQKLLSTIP---KLKEEQKRLETIEGIVPSiqafHVNK---CRFANRCNKKMDICNNQS 305
Cdd:PRK15079 237 LGHAVELGTYDEVYHNPLHPYTKALMSAVPipdPDLERNKTIQLLEGELPS----PINPpsgCVFRTRCPIAGPECAKTR 312
|
330
....*....|...
gi 777211855 306 PKMHVCEDVIVRC 318
Cdd:PRK15079 313 PVLEGSFRHAVSC 325
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-261 |
7.33e-87 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 270.42 E-value: 7.33e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGEVIFDGKRIDT 80
Cdd:PRK15134 1 MTQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPHQLSGG 160
Cdd:PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 161 MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG 240
Cdd:PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
|
250 260
....*....|....*....|.
gi 777211855 241 IKEILHNPKHPYTQKLLSTIP 261
Cdd:PRK15134 241 AATLFSAPTHPYTQKLLNSEP 261
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-261 |
8.24e-86 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 258.58 E-value: 8.24e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKridTLNEK 84
Cdd:COG1124 1 MLEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERP-----WSGEVTFDGR---PVTRR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLDIRGnDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEAnnlAKDLLKKVGIArqDEILNSYPHQLSGGMRQR 164
Cdd:COG1124 73 RRKAFRR-RVQMVFQDPYASLHPRHTVDRILAEPLRIHGLPDREER---IAELLEQVGLP--PSFLDRYPHQLSGGQRQR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 165 VMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:COG1124 147 VAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADL 226
|
250
....*....|....*..
gi 777211855 245 LHNPKHPYTQKLLSTIP 261
Cdd:COG1124 227 LAGPKHPYTRELLAASL 243
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
25-258 |
2.77e-84 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 253.83 E-value: 2.77e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKlSNGEVIFDGKRIDTLNekqlldIRGNDIAMIFQEPMTA 104
Cdd:TIGR02770 2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQ-TSGEILLDGRPLLPLS------IRGRHIATIMQNPRTA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKNQLVESIKSHKKISKkEANNLAKDLLKKVGIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPT 184
Cdd:TIGR02770 75 FNPLFTMGNHAIETLRSLGKLSK-QARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPT 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 185 TALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLS 258
Cdd:TIGR02770 154 TDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTRKLLS 227
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
5-294 |
4.08e-82 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 252.13 E-value: 4.08e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKIsKLSNGEVIFDGKRIDTLNEK 84
Cdd:COG4170 3 LLDIRNLTIEIDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNW-HVTADRFRWNGIDLLKLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKI-----SKKEANNLAKDLLKKVGIARQDEILNSYPHQLSG 159
Cdd:COG4170 82 ERRKIIGREIAMIFQEPSSCLDPSAKIGDQLIEAIPSWTFKgkwwqRFKWRKKRAIELLHRVGIKDHKDIMNSYPHELTE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:COG4170 162 GECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVESG 241
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 240 GIKEILHNPKHPYTQKLLSTIPKLKEE---QKRLETIEGIVPSIQAFHVNkCRFANRC 294
Cdd:COG4170 242 PTEQILKSPHHPYTKALLRSMPDFRQPlphKSRLNTLPGSIPPLQHLPIG-CRLGPRC 298
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
25-319 |
6.16e-73 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 228.31 E-value: 6.16e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKsiiklLPEKISKLSNGEVIFDGKriDTL-NEKQLLDIRGNDIAMIFQEPMT 103
Cdd:PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLAR-----LLTMIETPTGGELYYQGQ--DLLkADPEAQKLLRQKIQIVFQNPYG 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIarQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:PRK11308 104 SLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGL--RPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEP 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 184 TTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLSTIPKL 263
Cdd:PRK11308 182 VSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQALLSATPRL 261
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 264 KEEQKRLE-TIEGIVPSiqafHVNK---CRFANRCNKKMDICNNQSPKMHVCEDVIVRCH 319
Cdd:PRK11308 262 NPDDRRERiKLTGELPS----PLNPppgCAFNARCPRAFGRCRQEQPQLRDYDGRLVACF 317
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
5-319 |
2.21e-66 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 211.58 E-value: 2.21e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKIsKLSNGEVIFDGKRIDTLNEK 84
Cdd:PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNW-RVTADRMRFDDIDLLRLSPR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKK-----ISKKEANNLAKDLLKKVGIARQDEILNSYPHQLSG 159
Cdd:PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYkgrwwQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 240 GIKEILHNPKHPYTQKLLSTIPKLKE---EQKRLETIEGIVPSIQAFHVNkCRFANRCNKKMDICnNQSPKMHVCEDVIV 316
Cdd:PRK15093 242 PSKELVTTPHHPYTQALIRAIPDFGSampHKSRLNTLPGAIPLLEHLPIG-CRLGPRCPYAQREC-IETPRLTGAKNHLY 319
|
...
gi 777211855 317 RCH 319
Cdd:PRK15093 320 ACH 322
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
5-261 |
3.66e-65 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 216.26 E-value: 3.66e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLA-------TVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKisklsNGEVIFDGKR 77
Cdd:PRK10261 313 ILQVRNLVTRFPLRSGLLNrvtrevhAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQ-----GGEIIFNGQR 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 78 IDTLNEKQLLDIRgNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIarQDEILNSYPHQL 157
Cdd:PRK10261 388 IDTLSPGKLQALR-RDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGL--LPEHAWRYPHEF 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 158 SGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVE 237
Cdd:PRK10261 465 SGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE 544
|
250 260
....*....|....*....|....
gi 777211855 238 FGGIKEILHNPKHPYTQKLLSTIP 261
Cdd:PRK10261 545 IGPRRAVFENPQHPYTRKLMAAVP 568
|
|
| PhnK |
COG4107 |
ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and ... |
1-260 |
6.21e-64 |
|
ABC-type phosphonate transport system, ATPase component PhnK [Inorganic ion transport and metabolism];
Pssm-ID: 443283 [Multi-domain] Cd Length: 262 Bit Score: 203.12 E-value: 6.21e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNV---LLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSI-IKLLPekisklSNGEVIF--- 73
Cdd:COG4107 1 MTNEeqpLLSVRGLSKRYGPGCGTVVACRDVSFDLYPGEVLGIVGESGSGKSTLLKCLyFDLAP------TSGSVYYrdr 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 74 DGKRID--TLNEKQLLDIRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGI--ARQDEi 149
Cdd:COG4107 75 DGGPRDlfALSEAERRRLRRTDWGMVYQNPRDGLRMDVSAGGNIAERLMAAGERHYGDIRARALEWLERVEIplERIDD- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 150 lnsYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLV 229
Cdd:COG4107 154 ---LPRTFSGGMQQRVQIARALVTNPRLLFLDEPTTGLDVSVQARLLDLIRRLQRELGLSMIVVTHDLGVIRLLADRTMV 230
|
250 260 270
....*....|....*....|....*....|.
gi 777211855 230 MYAGQIVEFGGIKEILHNPKHPYTQKLLSTI 260
Cdd:COG4107 231 MKNGRVVESGLTDQVLEDPQHPYTQLLVSSV 261
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
25-258 |
1.13e-62 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 199.54 E-value: 1.13e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSnGEVIFDGKRIdtlnekQLLDIRGNDIAMIFQEPMTA 104
Cdd:PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA-GRVLLDGKPV------APCALRGRKIATIMQNPRSA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKNQLVESIKSHKKISkkeANNLAKDLLKKVGIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPT 184
Cdd:PRK10418 92 FNPLHTMHTHARETCLALGKPA---DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPT 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 185 TALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLS 258
Cdd:PRK10418 169 TDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPKHAVTRSLVS 242
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
5-257 |
1.80e-62 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 199.29 E-value: 1.80e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWL-----ATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRID 79
Cdd:COG4167 4 LLEVRNLSKTFKYRTGLFrrqqfEAVKPVSFTLEAGQTLAIIGENGSGKSTLAKMLAGIIEP-----TSGEILINGHKLE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 80 TLNEKQlldiRGNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARqdEILNSYPHQLSG 159
Cdd:COG4167 79 YGDYKY----RCKHIRMIFQDPNTSLNPRLNIGQILEEPLRLNTDLTAEEREERIFATLRLVGLLP--EHANFYPHMLSS 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:COG4167 153 GQKQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQGEVVEYG 232
|
250
....*....|....*...
gi 777211855 240 GIKEILHNPKHPYTQKLL 257
Cdd:COG4167 233 KTAEVFANPQHEVTKRLI 250
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
1-237 |
1.08e-58 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 188.33 E-value: 1.08e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLlEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKS-ILSksIIKLLpekiSKLSNGEVIFDGKRID 79
Cdd:COG1136 1 MSPLL-ELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKStLLN--ILGGL----DRPTSGEVLIDGQDIS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 80 TLNEKQLLDIRGNDIAMIFQEPmtALNPVFTIK-NqlVESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLS 158
Cdd:COG1136 74 SLSERELARLRRRHIGFVFQFF--NLLPELTALeN--VALPLLLAGVSRKERRERARELLERVGLG---DRLDHRPSQLS 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 159 GGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSvVAEFCDKVLVMYAGQIVE 237
Cdd:COG1136 147 GGQQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPE-LAARADRVIRLRDGRIVS 224
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
6-235 |
1.27e-57 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 185.39 E-value: 1.27e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSkSIIKLLpekiSKLSNGEVIFDGKRIDTLNEKQ 85
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGL----DRPTSGEVRVDGTDISKLSEKE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRGNDIAMIFQEPmtALNPVFTIKnQLVESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQRV 165
Cdd:cd03255 76 LAAFRRRHIGFVFQSF--NLLPDLTAL-ENVELPLLLAGVPKKERRERAEELLERVGLG---DRLNHYPSELSGGQQQRV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 166 MIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSvVAEFCDKVLVMYAGQI 235
Cdd:cd03255 150 AIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAEYADRIIELRDGKI 218
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
5-258 |
7.91e-57 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 192.23 E-value: 7.91e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLA-------TVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekisklSNGEVIFDGKR 77
Cdd:PRK15134 275 LLDVEQLQVAFPIRKGILKrtvdhnvVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN------SQGEIWFDGQP 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 78 IDTLNEKQLLDIRgNDIAMIFQEPMTALNPVFTIKnQLVES--IKSHKKISKKEANNLAKDLLKKVGIArqDEILNSYPH 155
Cdd:PRK15134 349 LHNLNRRQLLPVR-HRIQVVFQDPNSSLNPRLNVL-QIIEEglRVHQPTLSAAQREQQVIAVMEEVGLD--PETRHRYPA 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 156 QLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEV 504
|
250 260
....*....|....*....|...
gi 777211855 236 VEFGGIKEILHNPKHPYTQKLLS 258
Cdd:PRK15134 505 VEQGDCERVFAAPQQEYTRQLLA 527
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
25-273 |
6.27e-56 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 184.90 E-value: 6.27e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILsksiIKLlpekISKL---SNGEVIFDGKRIDTLNEKQLLDIRGNdIAMIFQ-- 99
Cdd:COG1135 21 LDDVSLTIEKGEIFGIIGYSGAGKSTL----IRC----INLLerpTSGSVLVDGVDLTALSERELRAARRK-IGMIFQhf 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 100 ---EPMTAlnpvftiknqlvesikshkkiskkeANNLA-----------------KDLLKKVGIArqdEILNSYPHQLSG 159
Cdd:COG1135 92 nllSSRTV-------------------------AENVAlpleiagvpkaeirkrvAELLELVGLS---DKADAYPSQLSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:COG1135 144 GQKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQG 223
|
250 260 270
....*....|....*....|....*....|....
gi 777211855 240 GIKEILHNPKHPYTQKLLSTIPKLKEEQKRLETI 273
Cdd:COG1135 224 PVLDVFANPQSELTRRFLPTVLNDELPEELLARL 257
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
5-260 |
8.07e-55 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 179.88 E-value: 8.07e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLE-----TSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpekiSKLSNGEVIFDGKRID 79
Cdd:PRK10419 3 LLNVSGLShhyahGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL-----ESPSQGNVSWRGEPLA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 80 TLNEKQLLDIRGnDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIArqDEILNSYPHQLSG 159
Cdd:PRK10419 78 KLNRAQRKAFRR-DIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLD--DSVLDKRPPQLSG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:PRK10419 155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQ 234
|
250 260
....*....|....*....|.
gi 777211855 240 GIKEILHNpKHPYTQKLLSTI 260
Cdd:PRK10419 235 PVGDKLTF-SSPAGRVLQNAV 254
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
5-260 |
6.13e-53 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 174.99 E-value: 6.13e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDL-----ETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpekiSKLSNGEVIFDGKRID 79
Cdd:TIGR02769 2 LLEVRDVthtyrTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL-----EKPAQGTVSFRGQDLY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 80 TLNEKQLLDIRgNDIAMIFQEPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIarQDEILNSYPHQLSG 159
Cdd:TIGR02769 77 QLDRKQRRAFR-RDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGL--RSEDADKLPRQLSG 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:TIGR02769 154 GQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEEC 233
|
250 260
....*....|....*....|.
gi 777211855 240 GIKEILhNPKHPYTQKLLSTI 260
Cdd:TIGR02769 234 DVAQLL-SFKHPAGRNLQSAV 253
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
5-249 |
6.52e-53 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 173.92 E-value: 6.52e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKsIIKLLpekiSKLSNGEVIFDGKRIDTLNEK 84
Cdd:cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIR-CINGL----ERPTSGSVLVDGTDLTLLSGK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLDIRGNdIAMIFQEpmtalnpvFTIKNQL-----VESIKSHKKISKKEANNLAKDLLKKVGIARQDEilnSYPHQLSG 159
Cdd:cd03258 76 ELRKARRR-IGMIFQH--------FNLLSSRtvfenVALPLEIAGVPKAEIEERVLELLELVGLEDKAD---AYPAQLSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:cd03258 144 GQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEG 223
|
250
....*....|
gi 777211855 240 GIKEILHNPK 249
Cdd:cd03258 224 TVEEVFANPQ 233
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-254 |
2.23e-51 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 170.16 E-value: 2.23e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSL---KInnewlatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKisklsnGEVIFDGK 76
Cdd:COG1127 1 MSEPMIEVRNLTKSFgdrVV-------LDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGLLrPDS------GEILVDGQ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 77 RIDTLNEKQLLDIRgNDIAMIFQEP-----MTAL-NPVFTIKNQLvesikshkKISKKEANNLAKDLLKKVGIArqdEIL 150
Cdd:COG1127 68 DITGLSEKELYELR-RRIGMLFQGGalfdsLTVFeNVAFPLREHT--------DLSEAEIRELVLEKLELVGLP---GAA 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 151 NSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVM 230
Cdd:COG1127 136 DKMPSELSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVL 215
|
250 260
....*....|....*....|....
gi 777211855 231 YAGQIVEFGGIKEILHNPkHPYTQ 254
Cdd:COG1127 216 ADGKIIAEGTPEELLASD-DPWVR 238
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
27-260 |
4.00e-49 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 164.01 E-value: 4.00e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLlpEKISKlsnGEVIFDGKRIdTLNEKQLLDIRGNdIAMIFQE----P- 101
Cdd:COG1126 19 GISLDVEKGEVVVIIGPSGSGKSTLLRCINLL--EEPDS---GTITVDGEDL-TDSKKDINKLRRK-VGMVFQQfnlfPh 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 MTAL-N----PVfTIKNQlvesikshkkiSKKEANNLAKDLLKKVGIARQdeiLNSYPHQLSGGMRQRVMIAMAISCSPK 176
Cdd:COG1126 92 LTVLeNvtlaPI-KVKKM-----------SKAEAEERAMELLERVGLADK---ADAYPAQLSGGQQQRVAIARALAMEPK 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 177 LLIADEPTTALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKL 256
Cdd:COG1126 157 VMLFDEPTSALDPELVGEVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEEGPPEEFFENPQHERTRAF 235
|
....
gi 777211855 257 LSTI 260
Cdd:COG1126 236 LSKV 239
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
5-245 |
1.09e-48 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 163.29 E-value: 1.09e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLetSLKINNEWLatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEK 84
Cdd:COG1120 1 MLEAENL--SVGYGGRPV--LDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLL-----KPSSGEVLLDGRDLASLSRR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QlldiRGNDIAMIFQEPMTALNpvFTIKnQLVES----IKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGG 160
Cdd:COG1120 72 E----LARRIAYVPQEPPAPFG--LTVR-ELVALgrypHLGLFGRPSAEDREAVEEALERTGLE---HLADRPVDELSGG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 161 MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG 240
Cdd:COG1120 142 ERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIVAQGP 221
|
....*
gi 777211855 241 IKEIL 245
Cdd:COG1120 222 PEEVL 226
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
6-249 |
1.26e-48 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 162.50 E-value: 1.26e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLetSLKINNEWLAtVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKridTLNEKQ 85
Cdd:COG1122 1 IELENL--SFSYPGGTPA-LDDVSLSIEKGEFVAIIGPNGSGKSTLLRLLNGLL-----KPTSGEVLVDGK---DITKKN 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRgNDIAMIFQEPMTAL-NPV------FTIKNQLVESIkshkkiskkEANNLAKDLLKKVGIArqdEILNSYPHQLS 158
Cdd:COG1122 70 LRELR-RKVGLVFQNPDDQLfAPTveedvaFGPENLGLPRE---------EIRERVEEALELVGLE---HLADRPPHELS 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 159 GGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEF 238
Cdd:COG1122 137 GGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRLNKE-GKTVIIVTHDLDLVAELADRVIVLDDGRIVAD 215
|
250
....*....|.
gi 777211855 239 GGIKEILHNPK 249
Cdd:COG1122 216 GTPREVFSDYE 226
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
7-260 |
2.61e-48 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 164.97 E-value: 2.61e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 7 EVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKsIIKLLpekiSKLSNGEVIFDGKRIDTLNEKQL 86
Cdd:PRK11153 3 ELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIR-CINLL----ERPTSGRVLVDGQDLTALSEKEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 87 LDIRgNDIAMIFQEpmtalnpvFtikNQLVESIKSHKKISKKEANNLAKD--------LLKKVGIARQDeilNSYPHQLS 158
Cdd:PRK11153 78 RKAR-RQIGMIFQH--------F---NLLSSRTVFDNVALPLELAGTPKAeikarvteLLELVGLSDKA---DRYPAQLS 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 159 GGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEF 238
Cdd:PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQ 222
|
250 260
....*....|....*....|..
gi 777211855 239 GGIKEILHNPKHPYTQKLLSTI 260
Cdd:PRK11153 223 GTVSEVFSHPKHPLTREFIQST 244
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
26-252 |
1.50e-47 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 159.97 E-value: 1.50e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKisklsnGEVIFDGKRIDTLNEKQLLDIRGNdIAMIFQEP--- 101
Cdd:cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLrPDS------GEVLIDGEDISGLSEAELYRLRRR-MGMLFQSGalf 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 --MTAL-NPVFTIKN--QLVESikshkkiskkEANNLAKDLLKKVGIaRQDEilNSYPHQLSGGMRQRVMIAMAISCSPK 176
Cdd:cd03261 90 dsLTVFeNVAFPLREhtRLSEE----------EIREIVLEKLEAVGL-RGAE--DLYPAELSGGMKKRVALARALALDPE 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 177 LLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPkHPY 252
Cdd:cd03261 157 LLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASD-DPL 231
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
26-260 |
1.22e-46 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 158.17 E-value: 1.22e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSILSKSI-IKLLPekisklSNGEVIF---DGKRID--TLNEKQLLDIRGNDIAMIFQ 99
Cdd:PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALsARLAP------DAGEVHYrmrDGQLRDlyALSEAERRRLLRTEWGFVHQ 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 100 EPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGI--ARQDEIlnsyPHQLSGGMRQRVMIAMAISCSPKL 177
Cdd:PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIdaARIDDL----PTTFSGGMQQRLQIARNLVTHPRL 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 178 LIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLL 257
Cdd:PRK11701 173 VFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQHPYTQLLV 252
|
...
gi 777211855 258 STI 260
Cdd:PRK11701 253 SSV 255
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-237 |
3.24e-46 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 156.44 E-value: 3.24e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILsksiIKLL-----PekisklSNGEVIFDG 75
Cdd:COG4181 4 SSAPIIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKSTL----LGLLagldrP------TSGTVRLAG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 76 KRIDTLNEKQLLDIRGNDIAMIFQE----P-MTALNPVFT---IKNQlvesikshkkiskKEANNLAKDLLKKVGIArqd 147
Cdd:COG4181 74 QDLFALDEDARARLRARHVGFVFQSfqllPtLTALENVMLpleLAGR-------------RDARARARALLERVGLG--- 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 148 EILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSvVAEFCDKV 227
Cdd:COG4181 138 HRLDHYPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPA-LAARCDRV 216
|
250
....*....|
gi 777211855 228 LVMYAGQIVE 237
Cdd:COG4181 217 LRLRAGRLVE 226
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
6-237 |
8.20e-46 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 154.94 E-value: 8.20e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTlnekq 85
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-----TSGEVLVDGEPVTG----- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 lldiRGNDIAMIFQEPmtALNPVFTI-KNqlVESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQR 164
Cdd:cd03293 71 ----PGPDRGYVFQQD--ALLPWLTVlDN--VALGLELQGVPKAEARERAEELLELVGLS---GFENAYPHQLSGGMRQR 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 165 VMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYA--GQIVE 237
Cdd:cd03293 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIVA 214
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
7-234 |
1.57e-45 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 153.78 E-value: 1.57e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 7 EVKDLetSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQL 86
Cdd:cd03225 1 ELKNL--SFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-----TSGEVLVDGKDLTKLSLKEL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 87 ldirGNDIAMIFQEPMTAL-NP------VFTIKNQLVESIkshkkiskkEANNLAKDLLKKVGIarqDEILNSYPHQLSG 159
Cdd:cd03225 74 ----RRKVGLVFQNPDDQFfGPtveeevAFGLENLGLPEE---------EIEERVEEALELVGL---EGLRDRSPFTLSG 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAGQ 234
Cdd:cd03225 138 GQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
25-264 |
8.47e-45 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 153.95 E-value: 8.47e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEKQLLDIRGNDIAMIFQE---- 100
Cdd:cd03294 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-----EPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSfall 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 101 P-MTAL-NPVFTIKNQLVesikshkkiSKKEANNLAKDLLKKVGIARQdeiLNSYPHQLSGGMRQRVMIAMAISCSPKLL 178
Cdd:cd03294 115 PhRTVLeNVAFGLEVQGV---------PRAEREERAAEALELVGLEGW---EHKYPDELSGGMQQRVGLARALAVDPDIL 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLS 258
Cdd:cd03294 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVREFFR 262
|
....*.
gi 777211855 259 TIPKLK 264
Cdd:cd03294 263 GVDRAK 268
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
25-239 |
9.01e-45 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 151.90 E-value: 9.01e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLnekqllDIRGNDIAMIFQEP--- 101
Cdd:cd03259 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER-----PDSGEILIDGRDVTGV------PPERRNIGMVFQDYalf 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 --MTAL-NPVFTIKNQLVesikshkkiSKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLL 178
Cdd:cd03259 85 phLTVAeNIAFGLKLRGV---------PKAEIRARVRELLELVGL---EGLLNRYPHELSGGQQQRVALARALAREPSLL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:cd03259 153 LLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
27-260 |
9.24e-45 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 153.45 E-value: 9.24e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGK-----RIDTLNEKQLLDIRGNDIAMIFQEP 101
Cdd:TIGR02323 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-----DHGTATYIMRsgaelELYQLSEAERRRLMRTEWGFVHQNP 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 MTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGI--ARQDEIlnsyPHQLSGGMRQRVMIAMAISCSPKLLI 179
Cdd:TIGR02323 96 RDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIdpTRIDDL----PRAFSGGMQQRLQIARNLVTRPRLVF 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 180 ADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLST 259
Cdd:TIGR02323 172 MDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLLVSS 251
|
.
gi 777211855 260 I 260
Cdd:TIGR02323 252 I 252
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
25-246 |
1.43e-44 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 152.14 E-value: 1.43e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEKqlldIRGNdIAMIFQEPmtA 104
Cdd:COG1131 16 LDGVSLTVEPGEIFGLLGPNGAGKTTTIRMLLGLL-----RPTSGEVRVLGEDVARDPAE----VRRR-IGYVPQEP--A 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKnQLVESIKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPT 184
Cdd:COG1131 84 LYPDLTVR-ENLRFFARLYGLPRKEARERIDELLELFGL---TDAADRKVGTLSGGMKQRLGLALALLHDPELLILDEPT 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 777211855 185 TALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILH 246
Cdd:COG1131 160 SGLDPEARRELWELLRELAAE-GKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDELKA 220
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
7-239 |
1.70e-44 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 150.28 E-value: 1.70e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 7 EVKDLetSLKINNEWLatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEKQL 86
Cdd:cd03214 1 EVENL--SVGYGGRTV--LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-----KPSSGEILLDGKDLASLSPKEL 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 87 LDIrgndIAMIFQepmtalnpvftiknqlvesikshkkiskkeannlakdLLKKVGIArqdEILNSYPHQLSGGMRQRVM 166
Cdd:cd03214 72 ARK----IAYVPQ-------------------------------------ALELLGLA---HLADRPFNELSGGERQRVL 107
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 777211855 167 IAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:cd03214 108 LARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-248 |
2.68e-43 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 149.47 E-value: 2.68e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDT 80
Cdd:COG1116 3 AAAPALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLE-----KPTSGEVLVDGKPVTG 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LnekqlldirGNDIAMIFQEP-----MTALnpvftiKNqlVESIKSHKKISKKEANNLAKDLLKKVGIARQdeiLNSYPH 155
Cdd:COG1116 78 P---------GPDRGVVFQEPallpwLTVL------DN--VALGLELRGVPKAERRERARELLELVGLAGF---EDAYPH 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 156 QLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDlsvVAE---FCDKVLVMYA 232
Cdd:COG1116 138 QLSGGMRQRVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHD---VDEavfLADRVVVLSA 214
|
250
....*....|....*.
gi 777211855 233 GQivefGGIKEILHNP 248
Cdd:COG1116 215 RP----GRIVEEIDVD 226
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-235 |
5.52e-43 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 147.27 E-value: 5.52e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLetSLKINNEWLatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNekq 85
Cdd:COG4619 1 LELEGL--SFRVGGKPI--LSPVSLTLEAGECVAITGPSGSGKSTLLRALADLDP-----PTSGEIYLDGKPLSAMP--- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRGnDIAMIFQEP-------MTALNPVFTIKNQLVESikshkkiskkeanNLAKDLLKKVGiaRQDEILNSYPHQLS 158
Cdd:COG4619 69 PPEWRR-QVAYVPQEPalwggtvRDNLPFPFQLRERKFDR-------------ERALELLERLG--LPPDILDKPVERLS 132
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 159 GGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:COG4619 133 GGERQRLALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-245 |
4.69e-42 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 146.00 E-value: 4.69e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLetSLKINNEWLatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDT 80
Cdd:COG1121 2 MMMPAIELENL--TVSYGGRPV--LEDVSLTIPPGEFVAIVGPNGAGKSTLLKAILGLLP-----PTSGTVRLFGKPPRR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LNEK-----QLLDIRGNdiamiFqePMTALnpvftiknQLVE----SIKSHKKISKKEANNLAKDLLKKVGIA----RQd 147
Cdd:COG1121 73 ARRRigyvpQRAEVDWD-----F--PITVR--------DVVLmgryGRRGLFRRPSRADREAVDEALERVGLEdladRP- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 148 eIlnsypHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKV 227
Cdd:COG1121 137 -I-----GELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLRELRRE-GKTILVVTHDLGAVREYFDRV 209
|
250
....*....|....*...
gi 777211855 228 LVMyAGQIVEFGGIKEIL 245
Cdd:COG1121 210 LLL-NRGLVAHGPPEEVL 226
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
18-247 |
9.19e-42 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 146.04 E-value: 9.19e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 18 NNEWLAtVENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKisklsnGEVIFDGkrIDTLNEKQLLDIRGNdIAM 96
Cdd:TIGR04520 12 ESEKPA-LKNVSLSIEKGEFVAIIGHNGSGKSTLAKLLNGLLlPTS------GKVTVDG--LDTLDEENLWEIRKK-VGM 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 97 IFQepmtalNPvftiKNQLV------------EsikshkkiskkeanNLA----------KDLLKKVGIarqDEILNSYP 154
Cdd:TIGR04520 82 VFQ------NP----DNQFVgatveddvafglE--------------NLGvpreemrkrvDEALKLVGM---EDFRDREP 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 155 HQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEfCDKVLVMYAGQ 234
Cdd:TIGR04520 135 HLLSGGQKQRVAIAGVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEAVL-ADRVIVMNKGK 213
|
250
....*....|...
gi 777211855 235 IVEFGGIKEILHN 247
Cdd:TIGR04520 214 IVAEGTPREIFSQ 226
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
5-259 |
2.29e-41 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 144.93 E-value: 2.29e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEW-----LATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRID 79
Cdd:PRK15112 4 LLEVRNLSKTFRYRTGWfrrqtVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----TSGELLIDDHPLH 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 80 TLNEKqlldIRGNDIAMIFQEPMTALNPVFTIkNQLVESIKSHKKISKKEANNLA-KDLLKKVGIaRQDEIlNSYPHQLS 158
Cdd:PRK15112 79 FGDYS----YRSQRIRMIFQDPSTSLNPRQRI-SQILDFPLRLNTDLEPEQREKQiIETLRQVGL-LPDHA-SYYPHMLA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 159 GGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEF 238
Cdd:PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVER 231
|
250 260
....*....|....*....|.
gi 777211855 239 GGIKEILHNPKHPYTQKLLST 259
Cdd:PRK15112 232 GSTADVLASPLHELTKRLIAG 252
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
25-236 |
2.75e-41 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 144.04 E-value: 2.75e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEKQLLDIRGnDIAMIFQEP--- 101
Cdd:COG3638 19 LDDVSLEIERGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGEILVDGQDVTALRGRALRRLRR-RIGMIFQQFnlv 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 --MTALNPV-----------------FTiknqlvesikshkkiskKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMR 162
Cdd:COG3638 93 prLSVLTNVlagrlgrtstwrsllglFP-----------------PEDRERALEALERVGLA---DKAYQRADQLSGGQQ 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 163 QRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:COG3638 153 QRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDGRVV 226
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
6-234 |
5.25e-41 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 141.17 E-value: 5.25e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLEtslKINNEWLAtVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNeKQ 85
Cdd:cd03229 1 LELKNVS---KRYGQKTV-LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-----EPDSGSILIDGEDLTDLE-DE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRgNDIAMIFQEPmtALNPVFTIKNqlvesikshkkiskkeanNLAkdllkkvgiarqdeilnsYPhqLSGGMRQRV 165
Cdd:cd03229 71 LPPLR-RRIGMVFQDF--ALFPHLTVLE------------------NIA------------------LG--LSGGQQQRV 109
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 166 MIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQ 234
Cdd:cd03229 110 ALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
6-236 |
8.00e-41 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 142.71 E-value: 8.00e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLEtslKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEKQ 85
Cdd:cd03256 1 IEVENLS---KTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE-----PTSGSVLIDGTDINKLKGKA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRGnDIAMIFQ-----EPMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGG 160
Cdd:cd03256 73 LRQLRR-QIGMIFQqfnliERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL---DKAYQRADQLSGG 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 161 MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:cd03256 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-252 |
9.83e-41 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 145.63 E-value: 9.83e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLEtslKINNEWLAtVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDT 80
Cdd:COG3842 1 MAMPALELENVS---KRYGDVTA-LDDVSLSIEPGEFVALLGPSGCGKTTLLRMIAGFET-----PDSGRILLDGRDVTG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LN-EKqlldiRgnDIAMIFQE----P-MTAL-NPVFTIKNQLVESIkshkkiskkEANNLAKDLLKKVGIarqDEILNSY 153
Cdd:COG3842 72 LPpEK-----R--NVGMVFQDyalfPhLTVAeNVAFGLRMRGVPKA---------EIRARVAELLELVGL---EGLADRY 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 154 PHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHD----LSVvaefCDKVLV 229
Cdd:COG3842 133 PHQLSGGQQQRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDqeeaLAL----ADRIAV 208
|
250 260
....*....|....*....|...
gi 777211855 230 MYAGQIVEFGGIKEILHNPKHPY 252
Cdd:COG3842 209 MNDGRIEQVGTPEEIYERPATRF 231
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
6-235 |
3.22e-40 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 140.36 E-value: 3.22e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKiNNEWLatvENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpEKISKlsnGEVIFDGKRIdTLNEKQ 85
Cdd:cd03262 1 IEIKNLHKSFG-DFHVL---KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL--EEPDS---GTIIIDGLKL-TDDKKN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRgNDIAMIFQEpmTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDeilNSYPHQLSGGMRQRV 165
Cdd:cd03262 71 INELR-QKVGMVFQQ--FNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA---DAYPAQLSGGQQQRV 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 166 MIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:cd03262 145 AIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| LolD_lipo_ex |
TIGR02211 |
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ... |
5-237 |
5.01e-40 |
|
lipoprotein releasing system, ATP-binding protein; This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 131266 [Multi-domain] Cd Length: 221 Bit Score: 140.18 E-value: 5.01e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILsksiIKLLpEKISKLSNGEVIFDGKRIDTLNEK 84
Cdd:TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTL----LHLL-GGLDNPTSGEVLFNGQSLSKLSSN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLDIRGNDIAMIFQepMTALNPVFTI-KNqlVESIKSHKKISKKEANNLAKDLLKKVGIARQdeiLNSYPHQLSGGMRQ 163
Cdd:TIGR02211 76 ERAKLRNKKLGFIYQ--FHHLLPDFTAlEN--VAMPLLIGKKSVKEAKERAYEMLEKVGLEHR---INHRPSELSGGERQ 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFcDKVLVMYAGQIVE 237
Cdd:TIGR02211 149 RVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKL-DRVLEMKDGQLFN 221
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
27-237 |
1.28e-38 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 136.34 E-value: 1.28e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEKQLLDIRGNdIAMIFQE------ 100
Cdd:COG2884 20 DVSLEIEKGEFVFLTGPSGAGKSTLLKLLYGEE-----RPTSGQVLVNGQDLSRLKRREIPYLRRR-IGVVFQDfrllpd 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 101 ---------PMTALNpvftiknqlvesikshkkISKKEANNLAKDLLKKVGIARQdeiLNSYPHQLSGGMRQRVMIAMAI 171
Cdd:COG2884 94 rtvyenvalPLRVTG------------------KSRKEIRRRVREVLDLVGLSDK---AKALPHELSGGEQQRVAIARAL 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 172 SCSPKLLIADEPTTALDVTIQAQILDLLKELQKeTQMAIMMITHDLSVVAEFCDKVLVMYAGQIVE 237
Cdd:COG2884 153 VNRPELLLADEPTGNLDPETSWEIMELLEEINR-RGTTVLIATHDLELVDRMPKRVLELEDGRLVR 217
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
5-236 |
4.07e-38 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 135.50 E-value: 4.07e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLEtslKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEK 84
Cdd:TIGR02315 1 MLEVENLS---KVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-----EPSSGSILLEGTDITKLRGK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLDIRGNdIAMIFQE-----PMTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSG 159
Cdd:TIGR02315 73 KLRKLRRR-IGMIFQHynlieRLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA---DKAYQRADQLSG 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
25-244 |
5.93e-38 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 134.62 E-value: 5.93e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGEVIFDGKRIDTLNEKQLLDIRGndIAMIFQEPmta 104
Cdd:cd03260 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRR--VGMVFQKP--- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lNPV-FTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIArqDEIL-NSYPHQLSGGMRQRVMIAMAISCSPKLLIADE 182
Cdd:cd03260 91 -NPFpGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW--DEVKdRLHALGLSGGQQQRLCLARALANEPEVLLLDE 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 777211855 183 PTTALDVTIQAQILDLLKELQKEtqMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:cd03260 168 PTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
6-259 |
2.87e-37 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 133.23 E-value: 2.87e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKiNNEwlatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKisklsnGEVIFDGKRIDTLN-E 83
Cdd:cd03299 1 LKVENLSKDWK-EFK----LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIkPDS------GKILLNGKDITNLPpE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 84 KQlldirgnDIAMIFQEpmTALNPVFTIKNQLvESIKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQ 163
Cdd:cd03299 70 KR-------DISYVPQN--YALFPHMTVYKNI-AYGLKKRKVDKKEIERKVLEIAEMLGI---DHLLNRKPETLSGGEQQ 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKE 243
Cdd:cd03299 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEE 216
|
250
....*....|....*.
gi 777211855 244 ILHNPKHPYTQKLLST 259
Cdd:cd03299 217 VFKKPKNEFVAEFLGF 232
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
25-252 |
5.28e-37 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 132.81 E-value: 5.28e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PekisklSNGEVIFDGKRIDTLNEKQLldiRGNdIAMIFQEpmT 103
Cdd:cd03295 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIeP------TSGEIFIDGEDIREQDPVEL---RRK-IGYVIQQ--I 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALNPVFTIKnQLVESIKSHKKISKKEANNLAKDLLKKVGIARQdEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:cd03295 85 GLFPHMTVE-ENIALVPKLLKWPKEKIRERADELLALVGLDPA-EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 184 TTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPY 252
Cdd:cd03295 163 FGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDF 231
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
7-239 |
5.29e-37 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 131.89 E-value: 5.29e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 7 EVKDLetSLKINNEwlATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEK-- 84
Cdd:cd03235 1 EVEDL--TVSYGGH--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-----PTSGSIRVFGKPLEKERKRig 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 ---QLLD------IRGNDIAMifqepMTALNPVFTIKNQlvesikshkkisKKEANNLAKDLLKKVGIArqdEILNSYPH 155
Cdd:cd03235 72 yvpQRRSidrdfpISVRDVVL-----MGLYGHKGLFRRL------------SKADKAKVDEALERVGLS---ELADRQIG 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 156 QLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqMAIMMITHDLSVVAEFCDKVLVMyAGQI 235
Cdd:cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG-MTILVVTHDLGLVLEYFDRVLLL-NRTV 209
|
....
gi 777211855 236 VEFG 239
Cdd:cd03235 210 VASG 213
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
6-235 |
4.07e-36 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 128.28 E-value: 4.07e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLEtslKINNEWLAtVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDtlneKQ 85
Cdd:cd03230 1 IEVRNLS---KRYGKKTA-LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-----KPDSGEIKVLGKDIK----KE 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRGNdIAMIFQEPMtaLNPVFTiknqlvesikshkkiskkeannlAKDLLKkvgiarqdeilnsyphqLSGGMRQRV 165
Cdd:cd03230 68 PEEVKRR-IGYLPEEPS--LYENLT-----------------------VRENLK-----------------LSGGMKQRL 104
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 166 MIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
27-257 |
4.73e-36 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 130.21 E-value: 4.73e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLlpEKISklsNGEVIFDGKRIDTLNEKQLLdIRgNDIAMIFQE----P- 101
Cdd:PRK09493 19 NIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL--EEIT---SGDLIVDGLKVNDPKVDERL-IR-QEAGMVFQQfylfPh 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 MTALNPVFTIKNQLvesikshKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIAD 181
Cdd:PRK09493 92 LTALENVMFGPLRV-------RGASKEEAEKQARELLAKVGLA---ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 182 EPTTALDVTIQAQILDLLKELQKETqMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLL 257
Cdd:PRK09493 162 EPTSALDPELRHEVLKVMQDLAEEG-MTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPSQRLQEFL 236
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
25-185 |
1.00e-35 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 126.61 E-value: 1.00e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQLldiRGNdIAMIFQEPmtA 104
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSP-----TEGTILLDGQDLTDDERKSL---RKE-IGYVFQDP--Q 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKNQLVESIKSHKKISKkEANNLAKDLLKKVGIARQ-DEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:pfam00005 70 LFPRLTVRENLRLGLLLKGLSKR-EKDARAEEALEKLGLGDLaDRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEP 148
|
..
gi 777211855 184 TT 185
Cdd:pfam00005 149 TA 150
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
25-234 |
1.62e-35 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 126.21 E-value: 1.62e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEKQLLdirgNDIAMIFQepmta 104
Cdd:cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL-----KPTSGEILIDGKDIAKLPLEELR----RRIGYVPQ----- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lnpvftiknqlvesikshkkiskkeannlakdllkkvgiarqdeilnsyphqLSGGMRQRVMIAMAISCSPKLLIADEPT 184
Cdd:cd00267 81 ----------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPT 108
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 777211855 185 TALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAGQ 234
Cdd:cd00267 109 SGLDPASRERLLELLRELAEE-GRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
6-258 |
1.87e-34 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 126.40 E-value: 1.87e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKINnewlATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGEVIFDGKRidTLNEKQ 85
Cdd:PRK11264 4 IEVKNLVKKFHGQ----TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTAR--SLSQQK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLdIRG--NDIAMIFQEpmTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDeilNSYPHQLSGGMRQ 163
Cdd:PRK11264 78 GL-IRQlrQHVGFVFQN--FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE---TSYPRRLSGGQQQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQ-MAImmITHDLSVVAEFCDKVLVMYAGQIVEFGGIK 242
Cdd:PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRtMVI--VTHEMSFARDVADRAIFMDQGRIVEQGPAK 229
|
250
....*....|....*.
gi 777211855 243 EILHNPKHPYTQKLLS 258
Cdd:PRK11264 230 ALFADPQQPRTRQFLE 245
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
23-245 |
3.19e-34 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 132.27 E-value: 3.19e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 23 ATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNekqLLDIRGNdIAMIFQEPM 102
Cdd:COG2274 489 PVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGLYE-----PTSGRILIDGIDLRQID---PASLRRQ-IGVVLQDVF 559
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 talnpVF--TIknqlvesikshkkiskkeANNLA-----------KDLLKKVGIarqDEILNSYPH-----------QLS 158
Cdd:COG2274 560 -----LFsgTI------------------RENITlgdpdatdeeiIEAARLAGL---HDFIEALPMgydtvvgeggsNLS 613
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 159 GGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKetQMAIMMITHDLSVVAEfCDKVLVMYAGQIVEF 238
Cdd:COG2274 614 GGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTIRL-ADRIIVLDKGRIVED 690
|
....*..
gi 777211855 239 GGIKEIL 245
Cdd:COG2274 691 GTHEELL 697
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
27-239 |
3.49e-34 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 125.51 E-value: 3.49e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKsIIKLL--PekisklSNGEVIFDGKRID---TLNEKQLLDIRgNDIAMIFQEp 101
Cdd:PRK11124 20 DITLDCPQGETLVLLGPSGAGKSSLLR-VLNLLemP------RSGTLNIAGNHFDfskTPSDKAIRELR-RNVGMVFQQ- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 mTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVgiaRQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIAD 181
Cdd:PRK11124 91 -YNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERL---RLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFD 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 182 EPTTALDVTIQAQILDLLKELQkETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:PRK11124 167 EPTAALDPEITAQIVSIIRELA-ETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
27-239 |
3.57e-34 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 124.33 E-value: 3.57e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSkGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEKQLLDIRGNDIAMIFQEpmTALN 106
Cdd:cd03297 16 KIDFDLN-EEVTGIFGASGAGKSTLLRCIAGLE-----KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ--YALF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 107 PVFTIKNQLVesiKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTA 186
Cdd:cd03297 88 PHLNVRENLA---FGLKRKRNREDRISVDELLDLLGL---DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 777211855 187 LDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:cd03297 162 LDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-244 |
5.92e-34 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 125.90 E-value: 5.92e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSLKiNNEWLAtVENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKisklsnGEVIFDGKrid 79
Cdd:PRK13635 1 MKEEIIRVEHISFRYP-DAATYA-LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLlPEA------GTITVGGM--- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 80 TLNEKQLLDIRgNDIAMIFQEPmtalnpvftiKNQLVESIKSHKKISKKEANNLAKD-LLKKVGIA----RQDEILNSYP 154
Cdd:PRK13635 70 VLSEETVWDVR-RQVGMVFQNP----------DNQFVGATVQDDVAFGLENIGVPREeMVERVDQAlrqvGMEDFLNREP 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 155 HQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAeFCDKVLVMYAGQ 234
Cdd:PRK13635 139 HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGE 217
|
250
....*....|
gi 777211855 235 IVEFGGIKEI 244
Cdd:PRK13635 218 ILEEGTPEEI 227
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
22-249 |
1.42e-33 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 123.32 E-value: 1.42e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 22 LATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEKQLLDiRGndIAMIFQEP 101
Cdd:cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-----RPTSGSVLFDGEDITGLPPHEIAR-LG--IGRTFQIP 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 -----MTALNPVFT--IKNQLVESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQRVMIAMAISCS 174
Cdd:cd03219 85 rlfpeLTVLENVMVaaQARTGSGLLLARARREEREARERAEELLERVGLA---DLADRPAGELSYGQQRRLEIARALATD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 175 PKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPK 249
Cdd:cd03219 162 PKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
25-257 |
2.28e-33 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 125.64 E-value: 2.28e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKisklsnGEVIFDGKRIDTlNekqlLDIRGNDIAMIFQEP-- 101
Cdd:COG1118 18 LDDVSLEIASGELVALLGPSGSGKTTLLRIIAGLEtPDS------GRIVLNGRDLFT-N----LPPRERRVGFVFQHYal 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 ---MTAL-NPVFTIKNQlvesikshkKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKL 177
Cdd:COG1118 87 fphMTVAeNIAFGLRVR---------PPSKAEIRARVEELLELVQL---EGLADRYPSQLSGGQRQRVALARALAVEPEV 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 178 LIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLL 257
Cdd:COG1118 155 LLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQVGTPDEVYDRPATPFVARFL 234
|
|
| heterocyst_DevA |
TIGR02982 |
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly ... |
27-236 |
5.29e-33 |
|
ABC exporter ATP-binding subunit, DevA family; Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Pssm-ID: 274374 [Multi-domain] Cd Length: 220 Bit Score: 121.66 E-value: 5.29e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLlpekiSKLSNGEVIFDGKRIDTLNEKQLLDIRGNdIAMIFQ-----EP 101
Cdd:TIGR02982 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGL-----RSVQEGSLKVLGQELHGASKKQLVQLRRR-IGYIFQahnllGF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 MTA---------LNPVFTIKnqlvesikshkkiskkEANNLAKDLLKKVGIARQdeiLNSYPHQLSGGMRQRVMIAMAIS 172
Cdd:TIGR02982 97 LTArqnvqmaleLQPNLSYQ----------------EARERARAMLEAVGLGDH---LNYYPHNLSGGQKQRVAIARALV 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 173 CSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDlSVVAEFCDKVLVMYAGQIV 236
Cdd:TIGR02982 158 HHPKLVLADEPTAALDSKSGRDVVELMQKLAKEQGCTILMVTHD-NRILDVADRILQMEDGKLL 220
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
26-228 |
1.19e-32 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 120.03 E-value: 1.19e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSILSkSIIKLLpEKISKlsnGEVIFDGKRIDTLNEKQLLDIRGNDIAMIFQEpmTAL 105
Cdd:TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLL-NIIGLL-EKFDS---GQVYLNGQETPPLNSKKASKFRREKLGYLFQN--FAL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 106 NPVFTIKNQLvESIKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTT 185
Cdd:TIGR03608 88 IENETVEENL-DLGLKYKKLSKKEKREKKKEALEKVGL---NLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPTG 163
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 777211855 186 ALDVTIQAQILDLLKELQKETQmAIMMITHDLSvVAEFCDKVL 228
Cdd:TIGR03608 164 SLDPKNRDEVLDLLLELNDEGK-TIIIVTHDPE-VAKQADRVI 204
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
27-249 |
1.39e-32 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 121.27 E-value: 1.39e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKsIIKLL--PekisklSNGEVIFDGKRID---TLNEKQLLDIRGNdIAMIFQEp 101
Cdd:COG4161 20 DINLECPSGETLVLLGPSGAGKSSLLR-VLNLLetP------DSGQLNIAGHQFDfsqKPSEKAIRLLRQK-VGMVFQQ- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 mTALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIAD 181
Cdd:COG4161 91 -YNLWPHLTVMENLIEAPCKVLGLSKEQAREKAMKLLARLRL---TDKADRFPLHLSGGQQQRVAIARALMMEPQVLLFD 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 182 EPTTALDVTIQAQILDLLKELQkETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGiKEILHNPK 249
Cdd:COG4161 167 EPTAALDPEITAQVVEIIRELS-QTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQGD-ASHFTQPQ 232
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
24-239 |
1.51e-32 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 120.05 E-value: 1.51e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 24 TVENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpEKISKlsnGEVIFDGKRIDTLNEKQlldirgNDIAMIFQEpmT 103
Cdd:cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL--EEPTS---GRIYIGGRDVTDLPPKD------RDIAMVFQN--Y 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALNPVFTIKNQLvESIKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:cd03301 82 ALYPHMTVYDNI-AFGLKLRKVPKDEIDERVREVAELLQI---EHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 184 TTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:cd03301 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
25-252 |
1.74e-32 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 123.64 E-value: 1.74e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpEKISKlsnGEVIFDGKRIDTLNEKQlldiRgnDIAMIFQEP--- 101
Cdd:COG3839 19 LKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGL--EDPTS---GEILIGGRDVTDLPPKD----R--NIAMVFQSYaly 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 --MTAL-NPVFTIKNQLVESIkshkkiskkEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLL 178
Cdd:COG3839 88 phMTVYeNIAFPLKLRKVPKA---------EIDRRVREAAELLGL---EDLLDRKPKQLSGGQRQRVALGRALVREPKVF 155
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLsvvAE---FCDKVLVMYAGQIVEFGGIKEILHNPKHPY 252
Cdd:COG3839 156 LLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDQ---VEamtLADRIAVMNDGRIQQVGTPEELYDRPANLF 229
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
6-234 |
3.30e-32 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 117.87 E-value: 3.30e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLetSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEKQ 85
Cdd:cd03228 1 IEFKNV--SFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD-----PTSGEILIDGVDLRDLDLES 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LldiRGNdIAMIFQEPMtalnpVF--TIknqlvesikshkkiskkeANNLakdllkkvgiarqdeilnsyphqLSGGMRQ 163
Cdd:cd03228 74 L---RKN-IAYVPQDPF-----LFsgTI------------------RENI-----------------------LSGGQRQ 103
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKEtqMAIMMITHDLSVVaEFCDKVLVMYAGQ 234
Cdd:cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAKG--KTVIVIAHRLSTI-RDADRIIVLDDGR 171
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
7-236 |
3.97e-32 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 118.90 E-value: 3.97e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 7 EVKDLETSLKINNEwlaTVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIdtlNEKQl 86
Cdd:cd03226 1 RIENISFSYKKGTE---ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-----KESSGSILLNGKPI---KAKE- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 87 ldiRGNDIAMIFQEPMTALnpvFTiknQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEilnSYPHQLSGGMRQRVM 166
Cdd:cd03226 69 ---RRKSIGYVMQDVDYQL---FT---DSVREELLLGLKELDAGNEQAETVLKDLDLYALKE---RHPLSLSGGQKQRLA 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 167 IAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGK-AVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
27-257 |
7.26e-32 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 118.70 E-value: 7.26e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQlldiRGndIAMIFQEpmtalN 106
Cdd:COG3840 17 RFDLTIAAGERVAILGPSGAGKSTLLNLIAGFLPP-----DSGRILWNGQDLTALPPAE----RP--VSMLFQE-----N 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 107 PVF---TIknqlvesikshkkiskkeANNLA-----------------KDLLKKVGIArqdEILNSYPHQLSGGMRQRVM 166
Cdd:COG3840 81 NLFphlTV------------------AQNIGlglrpglkltaeqraqvEQALERVGLA---GLLDRLPGQLSGGQRQRVA 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 167 IAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILH 246
Cdd:COG3840 140 LARCLVRKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIAADGPTAALLD 219
|
250
....*....|.
gi 777211855 247 NPKHPYTQKLL 257
Cdd:COG3840 220 GEPPPALAAYL 230
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
25-252 |
1.06e-31 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 118.60 E-value: 1.06e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpekiSKLSNGEVIFDGKRIDTLnekqllDIRGNDIAMIFQEpmTA 104
Cdd:cd03296 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL-----ERPDSGTILFGGEDATDV------PVQERNVGFVFQH--YA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKNQL---VESIKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIAD 181
Cdd:cd03296 85 LFRHMTVFDNVafgLRVKPRSERPPEAEIRAKVHELLKLVQL---DWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 777211855 182 EPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPY 252
Cdd:cd03296 162 EPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
2-276 |
1.99e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 118.94 E-value: 1.99e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 2 NNVLLEVKDLetSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKridTL 81
Cdd:PRK13632 4 KSVMIKVENV--SFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL-----KPQSGEIKIDGI---TI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 82 NEKQLLDIRGNdIAMIFQEP------MTALNPV-FTIKNQLVESIkshkkiskkEANNLAKDLLKKVGIarqDEILNSYP 154
Cdd:PRK13632 74 SKENLKEIRKK-IGIIFQNPdnqfigATVEDDIaFGLENKKVPPK---------KMKDIIDDLAKKVGM---EDYLDKEP 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 155 HQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEfCDKVLVMYAGQ 234
Cdd:PRK13632 141 QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGK 219
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 777211855 235 IVEFGGIKEILHNPK--------HPYTQKLLSTIPKLKEEQKRLETIEGI 276
Cdd:PRK13632 220 LIAQGKPKEILNNKEilekakidSPFIYKLSKKLKGIDPTYNEEELIEQI 269
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
27-248 |
2.24e-31 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 120.59 E-value: 2.24e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSilskSIIKLL-----PEK--ISklSNGEVIFDG-KRIDTLNEKqlldiRGndIAMIF 98
Cdd:COG4148 17 DVDFTLPGRGVTALFGPSGSGKT----TLLRAIaglerPDSgrIR--LGGEVLQDSaRGIFLPPHR-----RR--IGYVF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 99 QEPmtALNPVFTIKNqlvesikshkkiskkeanNL---AKDLLKKVGIARQDEI---------LNSYPHQLSGGMRQRVM 166
Cdd:COG4148 84 QEA--RLFPHLSVRG------------------NLlygRKRAPRAERRISFDEVvellgighlLDRRPATLSGGERQRVA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 167 IAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILH 246
Cdd:COG4148 144 IGRALLSSPRLLLMDEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVVASGPLAEVLS 223
|
..
gi 777211855 247 NP 248
Cdd:COG4148 224 RP 225
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
25-260 |
3.91e-31 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 120.91 E-value: 3.91e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSilskSIIKLLpEKISKLSNGEVIFDGKRIDTLNEKQLLDIRGNDIAMIFQEpmTA 104
Cdd:PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKS----TMVRLL-NRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS--FA 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKNQlVESIKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPT 184
Cdd:PRK10070 117 LMPHMTVLDN-TAFGMELAGINAEERREKALDALRQVGL---ENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAF 192
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 185 TALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLSTI 260
Cdd:PRK10070 193 SALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGV 268
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
25-247 |
4.75e-31 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 117.88 E-value: 4.75e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PekisklSNGEVIFDGkrIDTLNEKQLLDIRgNDIAMIFQEPMT 103
Cdd:PRK13633 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLiP------SEGKVYVDG--LDTSDEENLWDIR-NKAGMVFQNPDN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALnpVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:PRK13633 97 QI--VATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY---EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEP 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 184 TTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEfCDKVLVMYAGQIVEFGGIKEILHN 247
Cdd:PRK13633 172 TAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKE 234
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
23-255 |
5.04e-31 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 117.46 E-value: 5.04e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 23 ATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLS-NGEVIFDGKRIDTLNEKQLLdirgNDIAMIFQEP 101
Cdd:PRK14246 24 AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKvDGKVLYFGKDIFQIDAIKLR----KEVGMVFQQP 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 MTAlnPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQ-DEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIA 180
Cdd:PRK14246 100 NPF--PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEvYDRLNSPASQLSGGQQQRLTIARALALKPKVLLM 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 181 DEPTTALDVTIQAQILDLLKELQKEtqMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQK 255
Cdd:PRK14246 178 DEPTSMIDIVNSQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTEK 250
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-245 |
5.88e-31 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 118.03 E-value: 5.88e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSLKINNEWLatvENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDt 80
Cdd:PRK13636 1 MEDYILKVEELNYNYSDGTHAL---KGININIKKGEVTAILGGNGAGKSTLFQNLNGIL-----KPSSGRILFDGKPID- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LNEKQLLDIRGNdIAMIFQEPMtalNPVFTIK-NQLVESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSG 159
Cdd:PRK13636 72 YSRKGLMKLRES-VGMVFQDPD---NQLFSASvYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE---HLKDKPTHCLSF 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:PRK13636 145 GQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224
|
....*.
gi 777211855 240 GIKEIL 245
Cdd:PRK13636 225 NPKEVF 230
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
25-249 |
8.73e-31 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 116.18 E-value: 8.73e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpekiSKLSNGEVIFDGKRIDTL--NEKQlldirgndIAMIFQEpm 102
Cdd:cd03300 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF-----ETPTSGEILLDGKDITNLppHKRP--------VNTVFQN-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 TALNPVFTI-KNqlVESIKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIAD 181
Cdd:cd03300 81 YALFPHLTVfEN--IAFGLRLKKLPKAEIKERVAEALDLVQL---EGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 182 EPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPK 249
Cdd:cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223
|
|
| PhnT2 |
TIGR03265 |
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ... |
25-252 |
8.92e-31 |
|
putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein; This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274496 [Multi-domain] Cd Length: 353 Bit Score: 118.99 E-value: 8.92e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpekiSKLSNGEVIFDGKRIDTLNEKQlldirgNDIAMIFQEpmTA 104
Cdd:TIGR03265 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL-----ERQTAGTIYQGGRDITRLPPQK------RDYGIVFQS--YA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTI-KNqlVESIKSHKKISKKEANNLAKDLLKKVGIARQDeilNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:TIGR03265 87 LFPNLTVaDN--IAYGLKNRGMGRAEVAERVAELLDLVGLPGSE---RKYPGQLSGGQQQRVALARALATSPGLLLLDEP 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 184 TTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPY 252
Cdd:TIGR03265 162 LSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
25-247 |
1.02e-30 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 121.79 E-value: 1.02e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEKQLLdirgNDIAMIFQEPMta 104
Cdd:COG4988 353 LDGLSLTIPPGERVALVGPSGAGKSTLLNLLLGFLP-----PYSGSILINGVDLSDLDPASWR----RQIAWVPQNPY-- 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lnpVF--TIknqlvesikshkkiskkeANNLA-----------KDLLKKVGIarqDEILNSYPH-----------QLSGG 160
Cdd:COG4988 422 ---LFagTI------------------RENLRlgrpdasdeelEAALEAAGL---DEFVAALPDgldtplgeggrGLSGG 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 161 MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVAEfCDKVLVMYAGQIVEFGG 240
Cdd:COG4988 478 QAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR--TVILITHRLALLAQ-ADRILVLDDGRIVEQGT 554
|
....*..
gi 777211855 241 IKEILHN 247
Cdd:COG4988 555 HEELLAK 561
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
28-252 |
1.44e-30 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 118.29 E-value: 1.44e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 28 ISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLS-NGEVIFDG-KRIDTLNEKQlldirgnDIAMIFQEpmTAL 105
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVlNGRTLFDSrKGIFLPPEKR-------RIGYVFQE--ARL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 106 NPVFTIKNQLVESIKSHKKISKKEANNLAKDLLkkvGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTT 185
Cdd:TIGR02142 87 FPHLSVRGNLRYGMKRARPSERRISFERVIELL---GI---GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 186 ALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPY 252
Cdd:TIGR02142 161 ALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-235 |
2.55e-30 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 113.30 E-value: 2.55e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 4 VLLEVKDLETSlkinnewlATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNE 83
Cdd:cd03215 3 PVLEVRGLSVK--------GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP-----PASGEITLDGKPVTRRSP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 84 KQLLDiRGndIAMIFQEPM-TALNPVFTIknqlvesikshkkiskkeANNLAkdllkkvgiarqdeilnsYPHQLSGGMR 162
Cdd:cd03215 70 RDAIR-AG--IAYVPEDRKrEGLVLDLSV------------------AENIA------------------LSSLLSGGNQ 110
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 777211855 163 QRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:cd03215 111 QKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL-ADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
5-245 |
3.29e-30 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 114.95 E-value: 3.29e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLetSLKINNEWlaTVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEK 84
Cdd:COG4555 1 MIEVENL--SKKYGKVP--ALKDVSFTAKDGEITGLLGPNGAGKTTLLRMLAGLL-----KPDSGSILIDGEDVRKEPRE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLldirgNDIAMIFQEPMtaLNPVFTIKnQLVESIKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQR 164
Cdd:COG4555 72 AR-----RQIGVLPDERG--LYDRLTVR-ENIRYFAELYGLFDEELKKRIEELIELLGL---EEFLDRRVGELSTGMKKK 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 165 VMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:COG4555 141 VALARALVHDPKVLLLDEPTNGLDVMARRLLREILRAL-KKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVAQGSLDEL 219
|
.
gi 777211855 245 L 245
Cdd:COG4555 220 R 220
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
6-258 |
4.78e-30 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 119.87 E-value: 4.78e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLetSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEKQ 85
Cdd:COG4987 334 LELEDV--SFRYPGAGRPVLDGLSLTLPPGERVAIVGPSGSGKSTLLALLLRFLD-----PQSGSITLGGVDLRDLDEDD 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LldiRGNdIAMIFQEPmtalnPVF--TIknqlvesikshkkiskkeANNL-----------AKDLLKKVGIarqDEILNS 152
Cdd:COG4987 407 L---RRR-IAVVPQRP-----HLFdtTL------------------RENLrlarpdatdeeLWAALERVGL---GDWLAA 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 153 YPH-----------QLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKEtqMAIMMITHDLSVVA 221
Cdd:COG4987 457 LPDgldtwlgeggrRLSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAG--RTVLLITHRLAGLE 534
|
250 260 270
....*....|....*....|....*....|....*..
gi 777211855 222 EFcDKVLVMYAGQIVEFGGIKEILHnpKHPYTQKLLS 258
Cdd:COG4987 535 RM-DRILVLEDGRIVEQGTHEELLA--QNGRYRQLYQ 568
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
5-249 |
4.82e-30 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 115.17 E-value: 4.82e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLatvENISFELSKGEVLGIVGESGCGKSILSksiikLLPEKISKLSNGEVIFDGKRIDtLNEK 84
Cdd:PRK13639 1 ILETRDLKYSYPDGTEAL---KGINFKAEKGEMVALLGPNGAGKSTLF-----LHFNGILKPTSGEVLIKGEPIK-YDKK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLDIRgNDIAMIFQEPMTAL-NPvfTIKnQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDeilNSYPHQLSGGMRQ 163
Cdd:PRK13639 72 SLLEVR-KTVGIVFQNPDDQLfAP--TVE-EDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFE---NKPPHHLSGGQKK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKE 243
Cdd:PRK13639 145 RVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG-ITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE 223
|
....*.
gi 777211855 244 ILHNPK 249
Cdd:PRK13639 224 VFSDIE 229
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
25-258 |
5.65e-30 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 114.36 E-value: 5.65e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSI---IKLLPE-KISklsnGEVIFDGKridtlnekqllDIRGND------- 93
Cdd:COG1117 27 LKDINLDIPENKVTALIGPSGCGKSTLLRCLnrmNDLIPGaRVE----GEILLDGE-----------DIYDPDvdvvelr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 94 --IAMIFQEPmtalNP--------------VFTIKNQlvesikshkkiskKEANNLAKDLLKKVGIarQDEI---LNSYP 154
Cdd:COG1117 92 rrVGMVFQKP----NPfpksiydnvayglrLHGIKSK-------------SELDEIVEESLRKAAL--WDEVkdrLKKSA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 155 HQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKetQMAIMMITHDLSVVAEFCDKVLVMYAGQ 234
Cdd:COG1117 153 LGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTAKIEELILELKK--DYTIVIVTHNMQQAARVSDYTAFFYLGE 230
|
250 260
....*....|....*....|....
gi 777211855 235 IVEFGGIKEILHNPKHPYTQKLLS 258
Cdd:COG1117 231 LVEFGPTEQIFTNPKDKRTEDYIT 254
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-235 |
6.31e-30 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 113.76 E-value: 6.31e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILsksiIKLLPeKISKLSNGEVIFDGKRIDT 80
Cdd:PRK11629 1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTL----LHLLG-GLDTPTSGDVIFNGQPMSK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LNEKQLLDIRGNDIAMIFQepMTALNPVFT-IKNqlVESIKSHKKISKKEANNLAKDLLKKVGIARQDeilNSYPHQLSG 159
Cdd:PRK11629 76 LSSAAKAELRNQKLGFIYQ--FHHLLPDFTaLEN--VAMPLLIGKKKPAEINSRALEMLAAVGLEHRA---NHRPSELSG 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSvVAEFCDKVLVMYAGQI 235
Cdd:PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKRMSRQLEMRDGRL 223
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
25-252 |
6.64e-30 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 117.13 E-value: 6.64e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQLLDIRGNDIAMIFQE---- 100
Cdd:COG4175 43 VNDASFDVEEGEIFVIMGLSGSGKSTLVRCLNRLIEP-----TAGEVLIDGEDITKLSKKELRELRRKKMSMVFQHfall 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 101 P-MTAL-NPVFTIKNQLVESIkshkkiskkEANNLAKDLLKKVGIARQDeilNSYPHQLSGGMRQRVMIAMAISCSPKLL 178
Cdd:COG4175 118 PhRTVLeNVAFGLEIQGVPKA---------ERRERAREALELVGLAGWE---DSYPDELSGGMQQRVGLARALATDPDIL 185
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSvvaE---FCDKVLVMYAGQIVEFGGIKEILHNPKHPY 252
Cdd:COG4175 186 LMDEAFSALDPLIRREMQDELLELQAKLKKTIVFITHDLD---EalrLGDRIAIMKDGRIVQIGTPEEILTNPANDY 259
|
|
| OpuBA |
COG1125 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
25-261 |
1.28e-29 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440742 [Multi-domain] Cd Length: 306 Bit Score: 114.80 E-value: 1.28e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEKQLldiRGNdIAMIFQEpmTA 104
Cdd:COG1125 18 VDDLSLTIPAGEFTVLVGPSGCGKTTTLRMINRLIE-----PTSGRILIDGEDIRDLDPVEL---RRR-IGYVIQQ--IG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIK-N-----QLvesikshKKISKKEANNLAKDLLKKVGIARqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLL 178
Cdd:COG1125 87 LFPHMTVAeNiatvpRL-------LGWDKERIRARVDELLELVGLDP-EEYRDRYPHELSGGQQQRVGVARALAADPPIL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHD------LSvvaefcDKVLVMYAGQIVEFGGIKEILHNPKHPY 252
Cdd:COG1125 159 LMDEPFGALDPITREQLQDELLRLQRELGKTIVFVTHDidealkLG------DRIAVMREGRIVQYDTPEEILANPANDF 232
|
250
....*....|....*...
gi 777211855 253 ---------TQKLLSTIP 261
Cdd:COG1125 233 vadfvgadrGLRRLSLLR 250
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
1-244 |
1.67e-29 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 113.69 E-value: 1.67e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLetSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKllpekISKLSNGEVIFDGKRIDT 80
Cdd:PRK13648 3 DKNSIIVFKNV--SFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIG-----IEKVKSGEIFYNNQAITD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LNekqLLDIRgNDIAMIFQEP-------MTALNPVFTIKNQLVESIkshkkiskkEANNLAKDLLKKVGIARQdeiLNSY 153
Cdd:PRK13648 76 DN---FEKLR-KHIGIVFQNPdnqfvgsIVKYDVAFGLENHAVPYD---------EMHRRVSEALKQVDMLER---ADYE 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 154 PHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEfCDKVLVMYAG 233
Cdd:PRK13648 140 PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKG 218
|
250
....*....|.
gi 777211855 234 QIVEFGGIKEI 244
Cdd:PRK13648 219 TVYKEGTPTEI 229
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
27-234 |
2.07e-29 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 111.96 E-value: 2.07e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEKQLLDIRgNDIAMIFQE-----P 101
Cdd:TIGR02673 20 DVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT-----PSRGQVRIAGEDVNRLRGRQLPLLR-RRIGVVFQDfrllpD 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 MTAL-NPVFTIKNQLVESIKSHKKiskkeannlAKDLLKKVGIARQdeiLNSYPHQLSGGMRQRVMIAMAISCSPKLLIA 180
Cdd:TIGR02673 94 RTVYeNVALPLEVRGKKEREIQRR---------VGAALRQVGLEHK---ADAFPEQLSGGEQQRVAIARAIVNSPPLLLA 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 777211855 181 DEPTTALDVTIQAQILDLLKELQKETqMAIMMITHDLSVVAEFCDKVLVMYAGQ 234
Cdd:TIGR02673 162 DEPTGNLDPDLSERILDLLKRLNKRG-TTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-258 |
2.67e-29 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 112.70 E-value: 2.67e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKiNNEWLATVeniSFELSKGEVLGIVGESGCGKSILSK---SIIKLLPE-KISklsnGEVIFDGKRIDTL 81
Cdd:PRK14247 4 IEIRDLKVSFG-QVEVLDGV---NLEIPDNTITALMGPSGSGKSTLLRvfnRLIELYPEaRVS----GEVYLDGQDIFKM 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 82 NekqLLDIRgNDIAMIFQEPmtalNPVFTI---KNQLVESIKSHKKISKKEANNLAKDLLKKVGIarQDEI---LNSYPH 155
Cdd:PRK14247 76 D---VIELR-RRVQMVFQIP----NPIPNLsifENVALGLKLNRLVKSKKELQERVRWALEKAQL--WDEVkdrLDAPAG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 156 QLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKEtqMAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:PRK14247 146 KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQI 223
|
250 260
....*....|....*....|...
gi 777211855 236 VEFGGIKEILHNPKHPYTQKLLS 258
Cdd:PRK14247 224 VEWGPTREVFTNPRHELTEKYVT 246
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1-265 |
4.61e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 112.97 E-value: 4.61e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSLKINNEwlATVENISFELSKGEVLGIVGESGCGKSILSKSIIK-LLPEKiskLSNGEVIFDGKrid 79
Cdd:PRK13640 1 MKDNIVEFKHVSFTYPDSKK--PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGlLLPDD---NPNSKITVDGI--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 80 TLNEKQLLDIRgNDIAMIFQEP------MTALNPV-FTIKNQLVESIkshkkiskkEANNLAKDLLKKVGIArqdEILNS 152
Cdd:PRK13640 73 TLTAKTVWDIR-EKVGIVFQNPdnqfvgATVGDDVaFGLENRAVPRP---------EMIKIVRDVLADVGML---DYIDS 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 153 YPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSvVAEFCDKVLVMYA 232
Cdd:PRK13640 140 EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EANMADQVLVLDD 218
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 777211855 233 GQIVEFGGIKEILHNPKH--------PYTQKLlstIPKLKE 265
Cdd:PRK13640 219 GKLLAQGSPVEIFSKVEMlkeigldiPFVYKL---KNKLKE 256
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
25-249 |
5.84e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 112.62 E-value: 5.84e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIdTLN--EKQLLDIRgNDIAMIFQEPM 102
Cdd:PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL-----KPSSGTITIAGYHI-TPEtgNKNLKKLR-KKVSLVFQFPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 TALNPVFTIKNqlVESIKSHKKISKKEANNLAKDLLKKVGIArqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADE 182
Cdd:PRK13641 96 AQLFENTVLKD--VEFGPKNFGFSEDEAKEKALKWLKKVGLS--EDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 183 PTTALDVTIQAQILDLLKELQKETQMAImMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPK 249
Cdd:PRK13641 172 PAAGLDPEGRKEMMQLFKDYQKAGHTVI-LVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKE 237
|
|
| 3a0106s01 |
TIGR00968 |
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions] |
25-263 |
6.00e-29 |
|
sulfate ABC transporter, ATP-binding protein; [Transport and binding proteins, Anions]
Pssm-ID: 130041 [Multi-domain] Cd Length: 237 Bit Score: 111.43 E-value: 6.00e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpekiSKLSNGEVIFDGKriDTLNekqlLDIRGNDIAMIFQEpmTA 104
Cdd:TIGR00968 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL-----EQPDSGRIRLNGQ--DATR----VHARDRKIGFVFQH--YA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKNQL---VESIKSHKKISKKEANNLakdlLKKVGIARqdeILNSYPHQLSGGMRQRVMIAMAISCSPKLLIAD 181
Cdd:TIGR00968 83 LFKHLTVRDNIafgLEIRKHPKAKIKARVEEL----LELVQLEG---LGDRYPNQLSGGQRQRVALARALAVEPQVLLLD 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 182 EPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLSTIP 261
Cdd:TIGR00968 156 EPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSFLGEVN 235
|
..
gi 777211855 262 KL 263
Cdd:TIGR00968 236 VL 237
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
24-239 |
6.01e-29 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 116.80 E-value: 6.01e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 24 TVENISFELSKGEVLGIVGESGCGKSilskSIIKLL-----PEKisklsnGEVIFDGKRIDTLNEKQLldiRGNdIAMIF 98
Cdd:COG1132 355 VLKDISLTIPPGETVALVGPSGSGKS----TLVNLLlrfydPTS------GRILIDGVDIRDLTLESL---RRQ-IGVVP 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 99 QEPMtalnpVF--TIknqlvesikshkkiskkeANNLA--------KDLLKKVGIARQDEILNSYPH-----------QL 157
Cdd:COG1132 421 QDTF-----LFsgTI------------------RENIRygrpdatdEEVEEAAKAAQAHEFIEALPDgydtvvgergvNL 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 158 SGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqMAImMITHDLSVVAEfCDKVLVMYAGQIVE 237
Cdd:COG1132 478 SGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMKGR-TTI-VIAHRLSTIRN-ADRILVLDDGRIVE 554
|
..
gi 777211855 238 FG 239
Cdd:COG1132 555 QG 556
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
25-247 |
6.10e-29 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 112.45 E-value: 6.10e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIdTLNEKQLLDIRgNDIAMIFQEPmta 104
Cdd:PRK13637 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-----KPTSGKIIIDGVDI-TDKKVKLSDIR-KKVGLVFQYP--- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lnpvftiKNQLVESIK--------SHKKISKKEANNLAKDLLKKVGIARqDEILNSYPHQLSGGMRQRVMIAMAISCSPK 176
Cdd:PRK13637 93 -------EYQLFEETIekdiafgpINLGLSEEEIENRVKRAMNIVGLDY-EDYKDKSPFELSGGQKRRVAIAGVVAMEPK 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 777211855 177 LLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHN 247
Cdd:PRK13637 165 ILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
25-258 |
1.58e-28 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 110.70 E-value: 1.58e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGEVIFDGKRIDTlNEKQLLDIRgNDIAMIFQEPmta 104
Cdd:PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYS-PDVDPIEVR-REVGMVFQYP--- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lNPV--FTI-KNQLVESIKSHKKISKKEANNLAKDLLKKVgiARQDEI---LNSYPHQLSGGMRQRVMIAMAISCSPKLL 178
Cdd:PRK14267 95 -NPFphLTIyDNVAIGVKLNGLVKSKKELDERVEWALKKA--ALWDEVkdrLNDYPSNLSGGQRQRLVIARALAMKPKIL 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKEtqMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLS 258
Cdd:PRK14267 172 LMDEPTANIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPEHELTEKYVT 249
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
25-244 |
1.63e-28 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 109.86 E-value: 1.63e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpekiSKLSNGEVIFDGKRIDTlnekqlldiRGNDIAMIFQEpmTA 104
Cdd:TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGL-----AQPTSGGVILEGKQITE---------PGPDRMVVFQN--YS 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIK-NQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEilnSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:TIGR01184 65 LLPWLTVReNIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD---KRPGQLSGGMKQRVAIARALSIRPKVLLLDEP 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 777211855 184 TTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:TIGR01184 142 FGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
5-237 |
2.20e-28 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 109.48 E-value: 2.20e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSkSIIKLLPEKisklSNGEVIFDGKRIDTLNEK 84
Cdd:PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLL-AILAGLDDG----SSGEVSLVGQPLHQMDEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLDIRGNDIAMIFQEPMtaLNPVF-TIKNqlVESIKSHKKISKKEANNLAKDLLKKVGIARQdeiLNSYPHQLSGGMRQ 163
Cdd:PRK10584 81 ARAKLRAKHVGFVFQSFM--LIPTLnALEN--VELPALLRGESSRQSRNGAKALLEQLGLGKR---LDHLPAQLSGGEQQ 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEfCDKVLVMYAGQIVE 237
Cdd:PRK10584 154 RVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226
|
|
| COG4559 |
COG4559 |
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]; |
5-258 |
7.94e-28 |
|
ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443620 [Multi-domain] Cd Length: 258 Bit Score: 108.66 E-value: 7.94e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLetSLKINNEWLatVENISFELSKGEVLGIVGESGCGKSILsksiIKLLPEKIsKLSNGEVIFDGKRIDTLNEK 84
Cdd:COG4559 1 MLEAENL--SVRLGGRTL--LDDVSLTLRPGELTAIIGPNGAGKSTL----LKLLTGEL-TPSSGEVRLNGRPLAAWSPW 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLDIRgndiAMIFQEpmTALNPVFTIKnQLVESIKSHKKISKKEANNLAKDLLKKVGIA----RqdeilnSYPhQLSGG 160
Cdd:COG4559 72 ELARRR----AVLPQH--SSLAFPFTVE-EVVALGRAPHGSSAAQDRQIVREALALVGLAhlagR------SYQ-TLSGG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 161 MRQRVMIAMAI-------SCSPKLLIADEPTTALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAG 233
Cdd:COG4559 138 EQQRVQLARVLaqlwepvDGGPRWLFLDEPTSALDLAHQHAVLRLARQLARR-GGGVVAVLHDLNLAAQYADRILLLHQG 216
|
250 260
....*....|....*....|....*
gi 777211855 234 QIVEFGGIKEILhnpkhpyTQKLLS 258
Cdd:COG4559 217 RLVAQGTPEEVL-------TDELLE 234
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
1-235 |
1.28e-27 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 108.67 E-value: 1.28e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLlEVKDLETSLKINNEWLaTVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGkriDT 80
Cdd:PRK13650 1 MSNII-EVKNLTFKYKEDQEKY-TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL-----EAESGQIIIDG---DL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LNEKQLLDIRgNDIAMIFQEPmtalnpvftiKNQLVESIKSHKKISKKEANNLAKDLLKKvgiaRQDEILN--------- 151
Cdd:PRK13650 71 LTEENVWDIR-HKIGMVFQNP----------DNQFVGATVEDDVAFGLENKGIPHEEMKE----RVNEALElvgmqdfke 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 152 SYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAeFCDKVLVMY 231
Cdd:PRK13650 136 REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMK 214
|
....
gi 777211855 232 AGQI 235
Cdd:PRK13650 215 NGQV 218
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-258 |
1.88e-27 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 107.55 E-value: 1.88e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLetSLKINNEwlATVENISFELSKGEVLGIVGESGCGKSILSKSIIK---LLPEKISklsNGEVIFDGK- 76
Cdd:PRK14239 1 MTEPILQVSDL--SVYYNKK--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRmndLNPEVTI---TGSIVYNGHn 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 77 ----RIDTLnekqllDIRgNDIAMIFQEPmtalNPV-FTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIarQDEI-- 149
Cdd:PRK14239 74 iyspRTDTV------DLR-KEIGMVFQQP----NPFpMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASI--WDEVkd 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 150 -LNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAImmITHDLSVVAEFCDKVL 228
Cdd:PRK14239 141 rLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLL--VTRSMQQASRISDRTG 218
|
250 260 270
....*....|....*....|....*....|
gi 777211855 229 VMYAGQIVEFGGIKEILHNPKHPYTQKLLS 258
Cdd:PRK14239 219 FFLDGDLIEYNDTKQMFMNPKHKETEDYIS 248
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
27-236 |
2.26e-27 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 104.82 E-value: 2.26e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEKQLLDiRGndIAMIfqepmtaln 106
Cdd:cd03216 18 GVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-----KPDSGEILVDGKEVSFASPRDARR-AG--IAMV--------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 107 pvftiknqlvesikshkkiskkeannlakdllkkvgiarqdeilnsypHQLSGGMRQRVMIAMAISCSPKLLIADEPTTA 186
Cdd:cd03216 81 ------------------------------------------------YQLSVGERQMVEIARALARNARLLILDEPTAA 112
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 777211855 187 LDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:cd03216 113 LTPAEVERLFKVIRRLRAQ-GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
23-235 |
3.93e-27 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 105.95 E-value: 3.93e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 23 ATVENISFELSKGEVLGIVGESGCGKSilskSIIKLLpEKISKLSNGEVIFDGKRIDTLNEKQLLDIRgNDIAMIFQEpm 102
Cdd:cd03292 15 AALDGINISISAGEFVFLVGPSGAGKS----TLLKLI-YKEELPTSGTIRVNGQDVSDLRGRAIPYLR-RKIGVVFQD-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 TALNPVFTIKNQlVESIKSHKKISKKEANNLAKDLLKKVGIARQDeilNSYPHQLSGGMRQRVMIAMAISCSPKLLIADE 182
Cdd:cd03292 87 FRLLPDRNVYEN-VAFALEVTGVPPREIRKRVPAALELVGLSHKH---RALPAELSGGEQQRVAIARAIVNSPTILIADE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 777211855 183 PTTALDVTIQAQILDLLKELQKeTQMAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:cd03292 163 PTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
6-247 |
4.15e-27 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 105.98 E-value: 4.15e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLET---SLKInnewlatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLN 82
Cdd:cd03224 1 LEVENLNAgygKSQI-------LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP-----PRSGSIRFDGRDITGLP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 83 EKQLLDiRGndIAMIFQEPMtaLNPVFTIKNQLVesikshkkiskkeannLAKDLLKKVGIARQ-DEILNSYP------H 155
Cdd:cd03224 69 PHERAR-AG--IGYVPEGRR--IFPELTVEENLL----------------LGAYARRRAKRKARlERVYELFPrlkerrK 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 156 Q----LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMY 231
Cdd:cd03224 128 QlagtLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLE 206
|
250
....*....|....*.
gi 777211855 232 AGQIVEFGGIKEILHN 247
Cdd:cd03224 207 RGRVVLEGTAAELLAD 222
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
6-244 |
5.53e-27 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 105.66 E-value: 5.53e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLEtslKI--NNEWLAtVENISFELSKGEVLGIVGESGCGKSilskSIIKLLPEKISKlSNGEVIFDGKRIDTlne 83
Cdd:cd03263 1 LQIRNLT---KTykKGTKPA-VDDLSLNVYKGEIFGLLGHNGAGKT----TTLKMLTGELRP-TSGTAYINGYSIRT--- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 84 kQLLDIRGNdIAMIFQEpmTALNPVFTIKnQLVESIKSHKKISKKEANNLAKDLLKKVGIARQdeiLNSYPHQLSGGMRQ 163
Cdd:cd03263 69 -DRKAARQS-LGYCPQF--DALFDELTVR-EHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK---ANKRARTLSGGMKR 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKE 243
Cdd:cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQE 218
|
.
gi 777211855 244 I 244
Cdd:cd03263 219 L 219
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
5-216 |
7.05e-27 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 104.87 E-value: 7.05e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLetSLKINNEWLatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDtlneK 84
Cdd:COG4133 2 MLEAENL--SCRRGERLL--FSGLSFTLAAGEALALTGPNGSGKTTLLRILAGLLP-----PSAGEVLWNGEPIR----D 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLDIRGnDIAMIFQEPmtALNPVFTIKNQLVESIKSHKKISKKEAnnlAKDLLKKVGIARqdeILNSYPHQLSGGMRQR 164
Cdd:COG4133 69 AREDYRR-RLAYLGHAD--GLKPELTVRENLRFWAALYGLRADREA---IDEALEAVGLAG---LADLPVRQLSAGQKRR 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 777211855 165 VMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAImMITHD 216
Cdd:COG4133 140 VALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLARGGAVL-LTTHQ 190
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
4-245 |
9.68e-27 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 106.01 E-value: 9.68e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 4 VLLEVKDLetSLKINNEWLatVENISFELSKGEVLGIVGESGCGKSILsksiIKLLPEKISkLSNGEVIFDGKRIDTLNE 83
Cdd:PRK13548 1 AMLEARNL--SVRLGGRTL--LDDVSLTLRPGEVVAILGPNGAGKSTL----LRALSGELS-PDSGEVRLNGRPLADWSP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 84 KQLLDIRgndiAMIFQEpmTALNPVFTIKnQLVESIKSHKKISKKEANNLAKDLLKKVGIA----RqdeilnSYPhQLSG 159
Cdd:PRK13548 72 AELARRR----AVLPQH--SSLSFPFTVE-EVVAMGRAPHGLSRAEDDALVAAALAQVDLAhlagR------DYP-QLSG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 160 GMRQRVMIAMA---ISC---SPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAG 233
Cdd:PRK13548 138 GEQQRVQLARVlaqLWEpdgPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQG 217
|
250
....*....|..
gi 777211855 234 QIVEFGGIKEIL 245
Cdd:PRK13548 218 RLVADGTPAEVL 229
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
6-240 |
9.78e-27 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 104.49 E-value: 9.78e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLetSLKINNEWLatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISklSNGEVIFDGKRIDTLNEKQ 85
Cdd:COG4136 2 LSLENL--TITLGGRPL--LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAFS--ASGEVLLNGRRLTALPAEQ 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 lldiRGndIAMIFQEPMtaLNPVFTIknqlvesikshkkiskkeANNLAKDLLKKVG-IARQDEIL------------NS 152
Cdd:COG4136 76 ----RR--IGILFQDDL--LFPHLSV------------------GENLAFALPPTIGrAQRRARVEqaleeaglagfaDR 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 153 YPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEfcdkvlvmyA 232
Cdd:COG4136 130 DPATLSGGQRARVALLRALLAEPRALLLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTHDEEDAPA---------A 200
|
....*...
gi 777211855 233 GQIVEFGG 240
Cdd:COG4136 201 GRVLDLGN 208
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
6-235 |
1.89e-26 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 102.68 E-value: 1.89e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKINNEWLatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQ 85
Cdd:cd03246 1 LEVENVSFRYPGAEPPV--LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-----TSGRVRLDGADISQWDPNE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LldirGNDIAMIFQEpmtalnpvftiknqlvesikshkkiskkeannlakDLLKKVGIArqDEILnsyphqlSGGMRQRV 165
Cdd:cd03246 74 L----GDHVGYLPQD-----------------------------------DELFSGSIA--ENIL-------SGGQRQRL 105
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 166 MIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAImMITHDLSVVAEfCDKVLVMYAGQI 235
Cdd:cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRI-VIAHRPETLAS-ADRILVLEDGRV 173
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
6-244 |
2.14e-26 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 103.99 E-value: 2.14e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLetsLKINNEWLAtVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGkrIDTLNEKQ 85
Cdd:cd03265 1 IEVENL---VKKYGDFEA-VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-----TSGRATVAG--HDVVREPR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 llDIRGNdIAMIFQEPmtALNPVFTIKNQLvESIKSHKKISKKEANNLAKDLLKKVGIAR-QDEILNSYphqlSGGMRQR 164
Cdd:cd03265 70 --EVRRR-IGIVFQDL--SVDDELTGWENL-YIHARLYGVPGAERRERIDELLDFVGLLEaADRLVKTY----SGGMRRR 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 165 VMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:cd03265 140 LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
3-230 |
2.87e-26 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 104.05 E-value: 2.87e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 3 NVLLEVKDLETSLKINNE---WLATVENISFELSKGEVLGIVGESGCGKSILSKSIIK-LLPEKisklsnGEVIF--DGK 76
Cdd:COG4778 2 TTLLEVENLSKTFTLHLQggkRLPVLDGVSFSVAAGECVALTGPSGAGKSTLLKCIYGnYLPDS------GSILVrhDGG 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 77 RID--TLNEKQLLDIRGNDIAMIFQ----EP-MTALnpvftiknQLVESIKSHKKISKKEANNLAKDLLKKVGIarqDEI 149
Cdd:COG4778 76 WVDlaQASPREILALRRRTIGYVSQflrvIPrVSAL--------DVVAEPLLERGVDREEARARARELLARLNL---PER 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 150 L-NSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVL 228
Cdd:COG4778 145 LwDLPPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEA-KARGTAIIGIFHDEEVREAVADRVV 223
|
..
gi 777211855 229 VM 230
Cdd:COG4778 224 DV 225
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
27-239 |
4.59e-26 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 103.77 E-value: 4.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSilskSIIKLLpEKISKLSNGEVIFDGKRIDTLNEKQLLDIrgndIAMIFQEPMtaln 106
Cdd:cd03249 21 GLSLTIPPGKTVALVGSSGCGKS----TVVSLL-ERFYDPTSGEILLDGVDIRDLNLRWLRSQ----IGLVSQEPV---- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 107 pVF--TIKNQLVESIKSHKKISKKEAnnlakdlLKKVGIarqDEILNSYPH-----------QLSGGMRQRVMIAMAISC 173
Cdd:cd03249 88 -LFdgTIAENIRYGKPDATDEEVEEA-------AKKANI---HDFIMSLPDgydtlvgergsQLSGGQKQRIAIARALLR 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 174 SPKLLIADEPTTALDVTIQAQILDLLKELQKEtqMAIMMITHDLSVVAEfCDKVLVMYAGQIVEFG 239
Cdd:cd03249 157 NPKILLLDEATSALDAESEKLVQEALDRAMKG--RTTIVIAHRLSTIRN-ADLIAVLQNGQVVEQG 219
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
25-271 |
5.05e-26 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 104.86 E-value: 5.05e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRI-DTLNEKQLLDIRgNDIAMIFQEPMT 103
Cdd:PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-----KPTTGTVTVDDITItHKTKDKYIRPVR-KRIGMVFQFPES 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 AL-------NPVFTIKNqlvesikshKKISKKEANNLAKDLLKKVGIARqdEILNSYPHQLSGGMRQRVMIAMAISCSPK 176
Cdd:PRK13646 97 QLfedtverEIIFGPKN---------FKMNLDEVKNYAHRLLMDLGFSR--DVMSQSPFQMSGGQMRKIAIVSILAMNPD 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 177 LLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKhpYTQKL 256
Cdd:PRK13646 166 IIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK--KLADW 243
|
250
....*....|....*
gi 777211855 257 LSTIPKLKEEQKRLE 271
Cdd:PRK13646 244 HIGLPEIVQLQYDFE 258
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
27-276 |
5.49e-26 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 104.72 E-value: 5.49e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFElsKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGE-VIFDGKRidtlnEKQLLDIRgNDIAMIFQEPmtal 105
Cdd:PRK13634 27 NVSIP--SGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGErVITAGKK-----NKKLKPLR-KKVGIVFQFP---- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 106 npvftiKNQLVESIKSHKK--------ISKKEANNLAKDLLKKVGIArqDEILNSYPHQLSGGMRQRVMIAMAISCSPKL 177
Cdd:PRK13634 95 ------EHQLFEETVEKDIcfgpmnfgVSEEDAKQKAREMIELVGLP--EELLARSPFELSGGQMRRVAIAGVLAMEPEV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 178 LIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHpYTQKLL 257
Cdd:PRK13634 167 LVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADPDE-LEAIGL 245
|
250
....*....|....*....
gi 777211855 258 StIPKLKEEQKRLETIEGI 276
Cdd:PRK13634 246 D-LPETVKFKRALEEKFGI 263
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
25-258 |
7.10e-26 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 103.51 E-value: 7.10e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpekiSKLSNGEVIFDGKRIDTLNEK------------QLLDIRgn 92
Cdd:PRK10619 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL-----EKPSEGSIVVNGQTINLVRDKdgqlkvadknqlRLLRTR-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 93 dIAMIFQE-----PMTALNPVFTIKNQLVesikshkKISKKEANNLAKDLLKKVGIARQDEIlnSYPHQLSGGMRQRVMI 167
Cdd:PRK10619 94 -LTMVFQHfnlwsHMTVLENVMEAPIQVL-------GLSKQEARERAVKYLAKVGIDERAQG--KYPVHLSGGQQQRVSI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 168 AMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHN 247
Cdd:PRK10619 164 ARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGN 242
|
250
....*....|.
gi 777211855 248 PKHPYTQKLLS 258
Cdd:PRK10619 243 PQSPRLQQFLK 253
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
25-245 |
2.00e-25 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 106.43 E-value: 2.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLsngEVIFDGKRIDTlnEKQLLDIRGND---IAMIFQEp 101
Cdd:TIGR03269 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV---NVRVGDEWVDM--TKPGPDGRGRAkryIGILHQE- 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 mTALNPVFTIKNQLVESIKSHKKISKkeANNLAKDLLKKVGIARQ--DEILNSYPHQLSGGMRQRVMIAMAISCSPKLLI 179
Cdd:TIGR03269 374 -YDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEkaEEILDKYPDELSEGERHRVALAQVLIKEPRIVI 450
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 180 ADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEIL 245
Cdd:TIGR03269 451 LDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIV 516
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
5-239 |
3.00e-25 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 100.91 E-value: 3.00e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGkrIDTLNEK 84
Cdd:cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-----EPDAGFATVDG--FDVVKEP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QllDIRGNdiaMIFQEPMTALNPVFTIKNQLvESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQR 164
Cdd:cd03266 74 A--EARRR---LGFVSDSTGLYDRLTARENL-EYFAGLYGLKGDELTARLEELADRLGME---ELLDRRVGGFSTGMRQK 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 165 VMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
25-239 |
3.19e-25 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 100.43 E-value: 3.19e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNekqlldirGNDIAMIFQEpmTA 104
Cdd:cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-----DSGEVLFDGKPLDIAA--------RNRIGYLPEE--RG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKNQLVeSIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPT 184
Cdd:cd03269 81 LYPKMKVIDQLV-YLAQLKGLKKEEARRRIDEWLERLELS---EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 185 TALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:cd03269 157 SGLDPVNVELLKDVIRELARAGK-TVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
5-260 |
4.15e-25 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 103.76 E-value: 4.15e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLkinnEWLATVENISFELSKGEVLGIVGESGCGKSILsksiIKLLPeKISKLSNGEVIFDGKRIDTLNEK 84
Cdd:PRK11607 19 LLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTL----LRMLA-GFEQPTAGQIMLDGVDLSHVPPY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QlldirgNDIAMIFQEpmTALNPVFTIKNQLvesikshkkiskkeANNLAKDLLKKVGI-ARQDEIL---------NSYP 154
Cdd:PRK11607 90 Q------RPINMMFQS--YALFPHMTVEQNI--------------AFGLKQDKLPKAEIaSRVNEMLglvhmqefaKRKP 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 155 HQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTI----QAQILDLLKELqketQMAIMMITHDLSVVAEFCDKVLVM 230
Cdd:PRK11607 148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLrdrmQLEVVDILERV----GVTCVMVTHDQEEAMTMAGRIAIM 223
|
250 260 270
....*....|....*....|....*....|
gi 777211855 231 YAGQIVEFGGIKEILHNPKHPYTQKLLSTI 260
Cdd:PRK11607 224 NRGKFVQIGEPEEIYEHPTTRYSAEFIGSV 253
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
6-216 |
5.04e-25 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 101.48 E-value: 5.04e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTlnekq 85
Cdd:COG4525 4 LTVRHVSVRYPGGGQPQPALQDVSLTIESGEFVVALGASGCGKTTLLNLIAGFLA-----PSSGEITLDGVPVTG----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 lldiRGNDIAMIFQE----P-MTAL-NPVFTIKNQLVESIkshkkiskkEANNLAKDLLKKVGIARQDEilnSYPHQLSG 159
Cdd:COG4525 74 ----PGADRGVVFQKdallPwLNVLdNVAFGLRLRGVPKA---------ERRARAEELLALVGLADFAR---RRIWQLSG 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHD 216
Cdd:COG4525 138 GMRQRVGIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHS 194
|
|
| PhnT |
TIGR03258 |
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding ... |
25-283 |
5.99e-25 |
|
2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Pssm-ID: 132302 [Multi-domain] Cd Length: 362 Bit Score: 103.15 E-value: 5.99e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKISklsnGEVIFDGKRIDTLNEKQlldiRGndIAMIFQEpmT 103
Cdd:TIGR03258 21 LDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVkAAGLT----GRIAIADRDLTHAPPHK----RG--LALLFQN--Y 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALNPVFTIKNQlVESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:TIGR03258 89 ALFPHLKVEDN-VAFGLRAQKMPKADIAERVADALKLVGLG---DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEP 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 184 TTALDVTIQAQILDLLKELQKE-TQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQK------L 256
Cdd:TIGR03258 165 LSALDANIRANMREEIAALHEElPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEflgaanI 244
|
250 260
....*....|....*....|....*..
gi 777211855 257 LSTIPKLKEEQKRLETIEGIVPSIQAF 283
Cdd:TIGR03258 245 LPAIALGITEAPGLVDVSCGGAVIFAF 271
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
13-266 |
6.25e-25 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 100.86 E-value: 6.25e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 13 TSLKINNEWLA-----TVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEKQLl 87
Cdd:PRK11231 1 MTLRTENLTVGygtkrILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-----TPQSGTVFLGDKPISMLSSRQL- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 88 dirGNDIAMIFQEPMTalnPVFTIKNQLVESIKSHKKISKkeaNNLAKDLLKKVGIARQ----DEILNSYPHQLSGGMRQ 163
Cdd:PRK11231 75 ---ARRLALLPQHHLT---PEGITVRELVAYGRSPWLSLW---GRLSAEDNARVNQAMEqtriNHLADRRLTDLSGGQRQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMItHDLSVVAEFCDKVLVMYAGQIVEFGGIKE 243
Cdd:PRK11231 146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVL-HDLNQASRYCDHLVVLANGHVMAQGTPEE 224
|
250 260
....*....|....*....|...
gi 777211855 244 ILhnpkhpyTQKLLSTIPKLKEE 266
Cdd:PRK11231 225 VM-------TPGLLRTVFDVEAE 240
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
25-245 |
7.29e-25 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 100.25 E-value: 7.29e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQLLdirgNDIAMIFQEpmta 104
Cdd:cd03252 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP-----ENGRVLVDGHDLALADPAWLR----RQVGVVLQE---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lNPVF--TIKNQLVESIKSHKKISKKEANNLA--KDLLKKVGIArQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIA 180
Cdd:cd03252 85 -NVLFnrSIRDNIALADPGMSMERVIEAAKLAgaHDFISELPEG-YDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIF 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 181 DEPTTALDVTIQAQILDLLKELQKetQMAIMMITHDLSVVAEfCDKVLVMYAGQIVEFGGIKEIL 245
Cdd:cd03252 163 DEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEQGSHDELL 224
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
4-236 |
2.08e-24 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 103.17 E-value: 2.08e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 4 VLLEVKDLETSlkinnewlATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNE 83
Cdd:COG1129 255 VVLEVEGLSVG--------GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGADP-----ADSGEIRLDGKPVRIRSP 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 84 KQLLDiRGndIAMIfqeP----MTALNPVFTIKNQLV----ESIKSHKKISKKEANNLAKDLLKKVGI---ARQDEILNs 152
Cdd:COG1129 322 RDAIR-AG--IAYV---PedrkGEGLVLDLSIRENITlaslDRLSRGGLLDRRRERALAEEYIKRLRIktpSPEQPVGN- 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 153 yphqLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYA 232
Cdd:COG1129 395 ----LSGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAE-GKAVIVISSELPELLGLSDRILVMRE 469
|
....
gi 777211855 233 GQIV 236
Cdd:COG1129 470 GRIV 473
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
27-244 |
4.63e-24 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 102.02 E-value: 4.63e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILsksiIKLL-----PEKisklsnGEVIFDGKRIDTLNEKQLLDiRGndIAMIFQEP 101
Cdd:COG1129 22 GVSLELRPGEVHALLGENGAGKSTL----MKILsgvyqPDS------GEILLDGEPVRFRSPRDAQA-AG--IAIIHQEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 mtALNPVFTI-----------KNQLVesikshkkiSKKEANNLAKDLLKKVGIA-RQDEILNSyphqLSGGMRQRVMIAM 169
Cdd:COG1129 89 --NLVPNLSVaeniflgreprRGGLI---------DWRAMRRRARELLARLGLDiDPDTPVGD----LSVAQQQLVEIAR 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 170 AISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:COG1129 154 ALSRDARVLILDEPTASLTEREVERLFRIIRRL-KAQGVAIIYISHRLDEVFEIADRVTVLRDGRLVGTGPVAEL 227
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
16-246 |
5.40e-24 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 99.39 E-value: 5.40e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 16 KINNEWLAtVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGkrIDTLNEKQLLDIRgndIA 95
Cdd:TIGR01188 1 KVYGDFKA-VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP-----TSGTARVAG--YDVVREPRKVRRS---IG 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 96 MIFQEPmtALNPVFTIKNQLvESIKSHKKISKKEANNLAKDLLKKVGI--ARqDEILNSYphqlSGGMRQRVMIAMAISC 173
Cdd:TIGR01188 70 IVPQYA--SVDEDLTGRENL-EMMGRLYGLPKDEAEERAEELLELFELgeAA-DRPVGTY----SGGMRRRLDIAASLIH 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 777211855 174 SPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILH 246
Cdd:TIGR01188 142 QPDVLFLDEPTTGLDPRTRRAIWDYIRAL-KEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
25-277 |
2.33e-23 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 98.87 E-value: 2.33e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpekiSKLSNGEVIFDGKRIDTLNEKQlldirgNDIAMIFQE---- 100
Cdd:PRK09452 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF-----ETPDSGRIMLDGQDITHVPAEN------RHVNTVFQSyalf 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 101 P-MTAL-NPVFTIKNQLVESIkshkkiskkEANNLAKDLLKKVgiaRQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLL 178
Cdd:PRK09452 99 PhMTVFeNVAFGLRMQKTPAA---------EITPRVMEALRMV---QLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVL 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLL- 257
Cdd:PRK09452 167 LLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIg 246
|
250 260
....*....|....*....|....*.
gi 777211855 258 ------STIPKLKEEQKRLETIEGIV 277
Cdd:PRK09452 247 einifdATVIERLDEQRVRANVEGRE 272
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
26-237 |
2.45e-23 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 96.69 E-value: 2.45e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTlnekqlldiRGNDIAMIFQEpmTAL 105
Cdd:PRK11248 18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY-----QHGSITLDGKPVEG---------PGAERGVVFQN--EGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 106 NPVFTIKNQlVESIKSHKKISKKEANNLAKDLLKKVGIARQDEilnSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTT 185
Cdd:PRK11248 82 LPWRNVQDN-VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEK---RYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 186 ALDVTIQAQILDLLKELQKETQMAIMMITHDLSvVAEFCDKVLVMYA---GQIVE 237
Cdd:PRK11248 158 ALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSpgpGRVVE 211
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
2-248 |
2.77e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 98.00 E-value: 2.77e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 2 NNVLLEVKDLETSL--KINNEWLAtVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEK-----ISKLSNGEVIFD 74
Cdd:PRK13631 18 DDIILRVKNLYCVFdeKQENELVA-LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKygtiqVGDIYIGDKKNN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 75 GKRIDTLNEKQLLDIRG--NDIAMIFQEPMTALnpvF--TIKNQLVeSIKSHKKISKKEANNLAKDLLKKVGIarQDEIL 150
Cdd:PRK13631 97 HELITNPYSKKIKNFKElrRRVSMVFQFPEYQL---FkdTIEKDIM-FGPVALGVKKSEAKKLAKFYLNKMGL--DDSYL 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 151 NSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAImMITHDLSVVAEFCDKVLVM 230
Cdd:PRK13631 171 ERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVF-VITHTMEHVLEVADEVIVM 249
|
250
....*....|....*...
gi 777211855 231 YAGQIVEFGGIKEILHNP 248
Cdd:PRK13631 250 DKGKILKTGTPYEIFTDQ 267
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
5-263 |
2.78e-23 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 97.18 E-value: 2.78e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINNEWLatvENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEK 84
Cdd:PRK13652 3 LIETRDLCYSYSGSKEAL---NNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-----KPTSGSVLIRGEPITKENIR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 QLLDIRGndiaMIFQEPMtalNPVF-TIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQ 163
Cdd:PRK13652 75 EVRKFVG----LVFQNPD---DQIFsPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGL---EELRDRVPHHLSGGEKK 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKE 243
Cdd:PRK13652 145 RVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEE 224
|
250 260
....*....|....*....|.
gi 777211855 244 ILHNPKHPYTQKL-LSTIPKL 263
Cdd:PRK13652 225 IFLQPDLLARVHLdLPSLPKL 245
|
|
| ArpD |
COG4618 |
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular ... |
23-245 |
2.99e-23 |
|
ABC-type protease/lipase transport system, ATPase and permease components [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 443660 [Multi-domain] Cd Length: 563 Bit Score: 100.21 E-value: 2.99e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 23 ATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEKQ-------------LLD- 88
Cdd:COG4618 346 PILRGVSFSLEPGEVLGVIGPSGSGKSTLARLLVGVWP-----PTAGSVRLDGADLSQWDREElgrhigylpqdveLFDg 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 89 -IRGNdIAMiFQEPmtalNPvftiknQLVEsikshkkiskkEAnnlAKdllkKVG----IARQ----DEILNSYPHQLSG 159
Cdd:COG4618 421 tIAEN-IAR-FGDA----DP------EKVV-----------AA---AK----LAGvhemILRLpdgyDTRIGEGGARLSG 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEfCDKVLVMYAGQIVEFG 239
Cdd:COG4618 471 GQRQRIGLARALYGDPRLVVLDEPNSNLDDEGEAALAAAIRAL-KARGATVVVITHRPSLLAA-VDKLLVLRDGRVQAFG 548
|
....*.
gi 777211855 240 GIKEIL 245
Cdd:COG4618 549 PRDEVL 554
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
27-236 |
3.03e-23 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 99.72 E-value: 3.03e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKisklsnGEVIFDGKRidtlnekqlLDIRG-ND-----IAMIFQ 99
Cdd:COG3845 23 DVSLTVRPGEIHALLGENGAGKSTLMKILYGLYqPDS------GEILIDGKP---------VRIRSpRDaialgIGMVHQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 100 EPMtaLNPVFTIknqlVE------SIKSHKKISKKEANNLAKDLLKKVGIarqdEI-LNSYPHQLSGGMRQRVMIAMAIS 172
Cdd:COG3845 88 HFM--LVPNLTV----AEnivlglEPTKGGRLDRKAARARIRELSERYGL----DVdPDAKVEDLSVGEQQRVEILKALY 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 173 CSPKLLIADEPTTALdvTIQ--AQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:COG3845 158 RGARILILDEPTAVL--TPQeaDELFEILRRLAAE-GKSIIFITHKLREVMAIADRVTVLRRGKVV 220
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
27-245 |
3.86e-23 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 95.76 E-value: 3.86e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSilskSIIKLLpEKISKLSNGEVIFDGKRIDTLNEKQLldiRGNdIAMIFQEpmtalN 106
Cdd:cd03253 19 DVSFTIPAGKKVAIVGPSGSGKS----TILRLL-FRFYDVSSGSILIDGQDIREVTLDSL---RRA-IGVVPQD-----T 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 107 PVF--TIKNQLVESIKSHKKISKKEAnnlAKdllkkvgIARQDEILNSYPHQ-----------LSGGMRQRVMIAMAISC 173
Cdd:cd03253 85 VLFndTIGYNIRYGRPDATDEEVIEA---AK-------AAQIHDKIMRFPDGydtivgerglkLSGGEKQRVAIARAILK 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 777211855 174 SPKLLIADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVAEfCDKVLVMYAGQIVEFGGIKEIL 245
Cdd:cd03253 155 NPPILLLDEATSALDTHTEREIQAALRDVSKGR--TTIVIAHRLSTIVN-ADKIIVLKDGRIVERGTHEELL 223
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
28-260 |
5.83e-23 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 95.29 E-value: 5.83e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 28 ISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekisklSNGEVIFDGKRIDTLNEKQLLDIRgndiAMIFQEPMTALN- 106
Cdd:COG4138 15 ISAQVNAGELIHLIGPNGAGKSTLLARMAGLLP------GQGEILLNGRPLSDWSAAELARHR----AYLSQQQSPPFAm 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 107 PVFtiknQ---LVESIKSHKKISKKEANNLAKDLlkkvgiaRQDEILNSYPHQLSGGMRQRVMIAMAI-----SCSP--K 176
Cdd:COG4138 85 PVF----QylaLHQPAGASSEAVEQLLAQLAEAL-------GLEDKLSRPLTQLSGGEWQRVRLAAVLlqvwpTINPegQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 177 LLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILhnpkhpyTQKL 256
Cdd:COG4138 154 LLLLDEPMNSLDVAQQAALDRLLREL-CQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVASGETAEVM-------TPEN 225
|
....
gi 777211855 257 LSTI 260
Cdd:COG4138 226 LSEV 229
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
25-269 |
9.19e-23 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 95.55 E-value: 9.19e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGEVIFDGKRIdtLNEKQLLDIRgNDIAMIFQEPmta 104
Cdd:PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI--FNYRDVLEFR-RRVGMLFQRP--- 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lNPV-FTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGI--ARQDEILNSyPHQLSGGMRQRVMIAMAISCSPKLLIAD 181
Cdd:PRK14271 111 -NPFpMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLwdAVKDRLSDS-PFRLSGGQQQLLCLARTLAVNPEVLLLD 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 182 EPTTALDVTIQAQILDLLKELQKetQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLSTIP 261
Cdd:PRK14271 189 EPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAETARYVAGLS 266
|
....*...
gi 777211855 262 KLKEEQKR 269
Cdd:PRK14271 267 GDVKDAKR 274
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
236-301 |
1.61e-22 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 89.00 E-value: 1.61e-22
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 236 VEFGGIKEILHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPSIQAFHvNKCRFANRCNKKMDIC 301
Cdd:pfam08352 1 VEEGPTDDILENPLHPYTRALLNSVPRLDPPKRPLYTIPGNVPSLLELP-EGCPFAPRCPFATEEC 65
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
3-236 |
1.62e-22 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 98.26 E-value: 1.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 3 NVLLEVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILsKSIIKLLpekiSKLSNGEVIFDGKRIDTLN 82
Cdd:PRK10535 2 TALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTL-MNILGCL----DKPTSGTYRVAGQDVATLD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 83 EKQLLDIRGNDIAMIFQE-----PMTALnpvftiknQLVESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQL 157
Cdd:PRK10535 77 ADALAQLRREHFGFIFQRyhllsHLTAA--------QNVEVPAVYAGLERKQRLLRAQELLQRLGLE---DRVEYQPSQL 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 158 SGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAImMITHDLSVVAEfCDKVLVMYAGQIV 236
Cdd:PRK10535 146 SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVI-IVTHDPQVAAQ-AERVIEIRDGEIV 222
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
3-245 |
1.94e-22 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 94.77 E-value: 1.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 3 NVLLEVKDLETSLKINNEwLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRidtLN 82
Cdd:PRK13642 2 NKILEVENLVFKYEKESD-VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-----FEGKVKIDGEL---LT 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 83 EKQLLDIRgNDIAMIFQEPmtalnpvftiKNQLVESIKSHKKISKKEANNLAKDLLkkvgIARQDEIL---------NSY 153
Cdd:PRK13642 73 AENVWNLR-RKIGMVFQNP----------DNQFVGATVEDDVAFGMENQGIPREEM----IKRVDEALlavnmldfkTRE 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 154 PHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEfCDKVLVMYAG 233
Cdd:PRK13642 138 PARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAG 216
|
250
....*....|..
gi 777211855 234 QIVEFGGIKEIL 245
Cdd:PRK13642 217 EIIKEAAPSELF 228
|
|
| oligo_HPY |
TIGR01727 |
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ... |
234-320 |
4.15e-22 |
|
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 88.57 E-value: 4.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 234 QIVEFGGIKEILHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPS-IQAFhvNKCRFANRCNKKMDICNNQSPKM-HVC 311
Cdd:TIGR01727 1 KIVETGPAEEIFKNPLHPYTKALLSAIPTIKKRDRKLISIPGEVPSlINLP--SGCRFYPRCPYAQDECRKEPPALvEIA 78
|
....*....
gi 777211855 312 EDVIVRCHL 320
Cdd:TIGR01727 79 EGHRVACHL 87
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
27-259 |
4.61e-22 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 92.84 E-value: 4.61e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSilskSIIKLLPEKISKLSNGEV-IFdGKRIDTLNekqLLDIRG------NDIAMIFQ 99
Cdd:COG1119 21 DISWTVKPGEHWAILGPNGAGKS----TLLSLITGDLPPTYGNDVrLF-GERRGGED---VWELRKriglvsPALQLRFP 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 100 EPMTALNPVFT-------IKNQLVEsikshkkiskkEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQRVMIAMAIS 172
Cdd:COG1119 93 RDETVLDVVLSgffdsigLYREPTD-----------EQRERARELLELLGLA---HLADRPFGTLSQGEQRRVLIARALV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 173 CSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILhnpkhpy 252
Cdd:COG1119 159 KDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHVLLLKDGRVVAAGPKEEVL------- 231
|
....*..
gi 777211855 253 TQKLLST 259
Cdd:COG1119 232 TSENLSE 238
|
|
| potA |
TIGR01187 |
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine ... |
40-252 |
4.62e-22 |
|
spermidine/putrescine ABC transporter ATP-binding subunit; This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 162242 [Multi-domain] Cd Length: 325 Bit Score: 94.48 E-value: 4.62e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 40 IVGESGCGKSILSKSIIKLlpekiSKLSNGEVIFDGKRIdTLNEKQLldiRGndIAMIFQEpmTALNPVFTIKnQLVESI 119
Cdd:TIGR01187 1 LLGPSGCGKTTLLRLLAGF-----EQPDSGSIMLDGEDV-TNVPPHL---RH--INMVFQS--YALFPHMTVE-ENVAFG 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 120 KSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLL 199
Cdd:TIGR01187 67 LKMRKVPRAEIKPRVLEALRLVQL---EEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 777211855 200 KELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPY 252
Cdd:TIGR01187 144 KTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
4-236 |
6.15e-22 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 95.86 E-value: 6.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 4 VLLEVKDLETslkINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNE 83
Cdd:COG3845 256 VVLEVENLSV---RDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGLRP-----PASGSIRLDGEDITGLSP 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 84 KQlldIRGNDIAMIFQEPM-TALNPVFTIKNQLV------ESIKSHKKISKKEANNLAKDLLKKVGIARQDeilnsyPHQ 156
Cdd:COG3845 328 RE---RRRLGVAYIPEDRLgRGLVPDMSVAENLIlgryrrPPFSRGGFLDRKAIRAFAEELIEEFDVRTPG------PDT 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 157 ----LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYA 232
Cdd:COG3845 399 parsLSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLEL-RDAGAAVLLISEDLDEILALSDRIAVMYE 477
|
....
gi 777211855 233 GQIV 236
Cdd:COG3845 478 GRIV 481
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
25-248 |
6.97e-22 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 94.52 E-value: 6.97e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpEKISKlsnGEVIFDGKRIDTLNEKQlldiRgnDIAMIFQEpmTA 104
Cdd:PRK11650 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL--ERITS---GEIWIGGRVVNELEPAD----R--DIAMVFQN--YA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIknqlvesikshkkiskkeANNLAKDL----LKKVGIARQ----------DEILNSYPHQLSGGMRQRVmiAM- 169
Cdd:PRK11650 87 LYPHMSV------------------RENMAYGLkirgMPKAEIEERvaeaarilelEPLLDRKPRELSGGQRQRV--AMg 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 170 -AISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDlSVVA-EFCDKVLVMYAGQIVEFGGIKEILHN 247
Cdd:PRK11650 147 rAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD-QVEAmTLADRVVVMNGGVAEQIGTPVEVYEK 225
|
.
gi 777211855 248 P 248
Cdd:PRK11650 226 P 226
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
14-236 |
7.20e-22 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 91.88 E-value: 7.20e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 14 SLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNekqLLDIRGNd 93
Cdd:cd03245 9 SFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-----KPTSGSVLLDGTDIRQLD---PADLRRN- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 94 IAMIFQEPMtalnpVF--TIKNQLVEsikshkkiskkeANNLAKD--LLKKVGIARQDEILNSYPH-----------QLS 158
Cdd:cd03245 80 IGYVPQDVT-----LFygTLRDNITL------------GAPLADDerILRAAELAGVTDFVNKHPNgldlqigergrGLS 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 159 GGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVaEFCDKVLVMYAGQIV 236
Cdd:cd03245 143 GGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDK--TLIIITHRPSLL-DLVDRIIVMDSGRIV 217
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
30-254 |
1.40e-21 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 91.07 E-value: 1.40e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 30 FELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQLLDIRGNDIAMIFqePMTALNPVF 109
Cdd:TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPP-----AKGTVKVAGASPGKGWRHIGYVPQRHEFAWDF--PISVAHTVM 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 110 TIKNQLVESIKSHKKiskkeANNLA-KDLLKKVGIArqdEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALD 188
Cdd:TIGR03771 74 SGRTGHIGWLRRPCV-----ADFAAvRDALRRVGLT---ELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 189 VTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVlVMYAGQIVEfGGIKEILHNPKhPYTQ 254
Cdd:TIGR03771 146 MPTQELLTELFIELAGA-GTAILMTTHDLAQAMATCDRV-VLLNGRVIA-DGTPQQLQDPA-PWMT 207
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
25-244 |
1.42e-21 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 92.86 E-value: 1.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQ---LLDIRGndiamifqep 101
Cdd:COG4152 17 VDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGILAP-----DSGEVLWDGEPLDPEDRRRigyLPEERG---------- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 mtaLNPVFTIKNQLV--------ESIkshkkiskkEANNLAKDLLKKVGIA--RQDEIlnsypHQLSGGMRQRVMIAMAI 171
Cdd:COG4152 82 ---LYPKMKVGEQLVylarlkglSKA---------EAKRRADEWLERLGLGdrANKKV-----EELSKGNQQKVQLIAAL 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 777211855 172 SCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:COG4152 145 LHDPELLILDEPFSGLDPVNVELLKDVIREL-AAKGTTVIFSSHQMELVEELCDRIVIINKGRKVLSGSVDEI 216
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
6-239 |
2.75e-21 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 89.78 E-value: 2.75e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLetSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNekq 85
Cdd:cd03369 7 IEVENL--SVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-----EAEEGKIEIDGIDISTIP--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRgNDIAMIFQEPMtalnpVF--TIKNQLvesikshkkisKKEANNLAKDLLKKVGIARQDEilnsyphQLSGGMRQ 163
Cdd:cd03369 77 LEDLR-SSLTIIPQDPT-----LFsgTIRSNL-----------DPFDEYSDEEIYGALRVSEGGL-------NLSQGQRQ 132
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVAEfCDKVLVMYAGQIVEFG 239
Cdd:cd03369 133 LLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNS--TILTIAHRLRTIID-YDKILVMDAGEVKEYD 205
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
25-246 |
2.85e-21 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 94.26 E-value: 2.85e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILsksiIKLLpEKISKLSNGEVIFDGKRIDTLNEKQLldiRGNdIAMIFQEPMta 104
Cdd:PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTL----INLL-QRVFDPQSGRILIDGTDIRTVTRASL---RRN-IAVVFQDAG-- 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lnpVF--TIKNQLVESIKSHKKISKKEANNLAK--DLlkkvgIARQDEILNSYP----HQLSGGMRQRVMIAMAISCSPK 176
Cdd:PRK13657 420 ---LFnrSIEDNIRVGRPDATDEEMRAAAERAQahDF-----IERKPDGYDTVVgergRQLSGGERQRLAIARALLKDPP 491
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 177 LLIADEPTTALDVTIQAQILDLLKELQKETQMAImmITHDLSVVAEfCDKVLVMYAGQIVEFGGIKEILH 246
Cdd:PRK13657 492 ILILDEATSALDVETEAKVKAALDELMKGRTTFI--IAHRLSTVRN-ADRILVFDNGRVVESGSFDELVA 558
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
1-249 |
3.71e-21 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 92.48 E-value: 3.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSLKINnewlATVENISFELSKGEVLGIVGESGCGKSilskSIIKLLPeKISKLSNGEVIFDGKriDT 80
Cdd:PRK11432 2 TQKNFVVLKNITKRFGSN----TVIDNLNLTIKQGTMVTLLGPSGCGKT----TVLRLVA-GLEKPTEGQIFIDGE--DV 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LNEKqlldIRGNDIAMIFQEpmTALNPVFTIKNQlVESIKSHKKISKKEANNLAKDLLKKVGIARQDEilnSYPHQLSGG 160
Cdd:PRK11432 71 THRS----IQQRDICMVFQS--YALFPHMSLGEN-VGYGLKMLGVPKEERKQRVKEALELVDLAGFED---RYVDQISGG 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 161 MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG 240
Cdd:PRK11432 141 QQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGS 220
|
....*....
gi 777211855 241 IKEILHNPK 249
Cdd:PRK11432 221 PQELYRQPA 229
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
25-239 |
3.94e-21 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 89.56 E-value: 3.94e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGeVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGkrIDTLNEKQllDIRGNdIAMIFQEPMTa 104
Cdd:cd03264 16 LDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP-----SSGTIRIDG--QDVLKQPQ--KLRRR-IGYLPQEFGV- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lNPVFTIKNQLvESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPT 184
Cdd:cd03264 84 -YPNFTVREFL-DYIAWLKGIPSKEVKARVDEVLELVNLG---DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 185 TALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:cd03264 159 AGLDPEERIRFRNLLSELGEDR--IVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
5-249 |
4.00e-21 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 90.04 E-value: 4.00e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETS---LKInnewlatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTL 81
Cdd:COG0410 3 MLEVENLHAGyggIHV-------LHGVSLEVEEGEIVALLGRNGAGKTTLLKAISGLLP-----PRSGSIRFDGEDITGL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 82 NEKQLLDiRGndIAM------IFQEpMTalnpvftiknqlVEsikshkkiskkEanNL---AKDLLKKVGIARQ-DEILN 151
Cdd:COG0410 71 PPHRIAR-LG--IGYvpegrrIFPS-LT------------VE-----------E--NLllgAYARRDRAEVRADlERVYE 121
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 152 SYP------HQ----LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVA 221
Cdd:COG0410 122 LFPrlkerrRQragtLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRL-NREGVTILLVEQNARFAL 200
|
250 260
....*....|....*....|....*...
gi 777211855 222 EFCDKVLVMYAGQIVEFGGIKEILHNPK 249
Cdd:COG0410 201 EIADRAYVLERGRIVLEGTAAELLADPE 228
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
25-254 |
6.33e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 90.10 E-value: 6.33e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIikllpEKISKLSnGEVIFDGkRIDTLNEkQLLDIRGN------DIAMIF 98
Cdd:PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL-----NRMNELE-SEVRVEG-RVEFFNQ-NIYERRVNlnrlrrQVSMVH 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 99 QEPmtALNPVfTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIarQDEI---LNSYPHQLSGGMRQRVMIAMAISCSP 175
Cdd:PRK14258 95 PKP--NLFPM-SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADL--WDEIkhkIHKSALDLSGGQQQRLCIARALAVKP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 176 KLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYA-----GQIVEFGGIKEILHNPKH 250
Cdd:PRK14258 170 KVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGnenriGQLVEFGLTKKIFNSPHD 249
|
....
gi 777211855 251 PYTQ 254
Cdd:PRK14258 250 SRTR 253
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
6-245 |
6.62e-21 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 92.21 E-value: 6.62e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKInnewLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQ 85
Cdd:PRK09536 4 IDVSDLSVEFGD----TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-----TAGTVLVAGDDVEALSARA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LldirGNDIAMIFQEpmTALNPVFTIKnQLVESIK---SHKKISKKEANNLAKD-LLKKVGIAR-QDEILNSyphqLSGG 160
Cdd:PRK09536 75 A----SRRVASVPQD--TSLSFEFDVR-QVVEMGRtphRSRFDTWTETDRAAVErAMERTGVAQfADRPVTS----LSGG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 161 MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMItHDLSVVAEFCDKVLVMYAGQIVEFGG 240
Cdd:PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAI-HDLDLAARYCDELVLLADGRVRAAGP 222
|
....*
gi 777211855 241 IKEIL 245
Cdd:PRK09536 223 PADVL 227
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
26-248 |
8.07e-21 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 93.25 E-value: 8.07e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSilskSIIKLLpEKISKLSNGEVIFDGKRIDTLNEKQLldirGNDIAMIFQEPMTAL 105
Cdd:TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKS----TVAALL-QNLYQPTGGQVLLDGVPLVQYDHHYL----HRQVALVGQEPVLFS 568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 106 NPVF-TIKNQLVESIKSHKKISKKEANnlAKDLLKKVGIARQDEIlNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPT 184
Cdd:TIGR00958 569 GSVReNIAYGLTDTPDEEIMAAAKAAN--AHDFIMEFPNGYDTEV-GEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT 645
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 185 TALDVTIQAqildLLKELQKETQMAIMMITHDLSVVaEFCDKVLVMYAGQIVEFGGIKEILHNP 248
Cdd:TIGR00958 646 SALDAECEQ----LLQESRSRASRTVLLIAHRLSTV-ERADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| MsbA_lipidA |
TIGR02203 |
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide ... |
23-245 |
8.49e-21 |
|
lipid A export permease/ATP-binding protein MsbA; This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]
Pssm-ID: 131258 [Multi-domain] Cd Length: 571 Bit Score: 92.86 E-value: 8.49e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 23 ATVENISFELSKGEVLGIVGESGCGKSilskSIIKLLPeKISKLSNGEVIFDGkriDTLNEKQLLDIRgNDIAMIFQEpm 102
Cdd:TIGR02203 346 PALDSISLVIEPGETVALVGRSGSGKS----TLVNLIP-RFYEPDSGQILLDG---HDLADYTLASLR-RQVALVSQD-- 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 talnpVFTIKNQLvesikshkkiskkeANNLAKDLLKKVGIAR-----QD----EILNSYP---HQ--------LSGGMR 162
Cdd:TIGR02203 415 -----VVLFNDTI--------------ANNIAYGRTEQADRAEieralAAayaqDFVDKLPlglDTpigengvlLSGGQR 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 163 QRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVaEFCDKVLVMYAGQIVEFGGIK 242
Cdd:TIGR02203 476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGR--TTLVIAHRLSTI-EKADRIVVMDDGRIVERGTHN 552
|
...
gi 777211855 243 EIL 245
Cdd:TIGR02203 553 ELL 555
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
6-239 |
9.99e-21 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 88.70 E-value: 9.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKINNEWlaTVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNekq 85
Cdd:cd03244 3 IEFKNVSLRYRPNLPP--VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE-----LSSGSILIDGVDISKIG--- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRGNdIAMIFQEPMtalnpVF--TIKNQLvesikshkkiskkEANNLAKDL-----LKKVGIarqDEILNSYPHQL- 157
Cdd:cd03244 73 LHDLRSR-ISIIPQDPV-----LFsgTIRSNL-------------DPFGEYSDEelwqaLERVGL---KEFVESLPGGLd 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 158 ----------SGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVAEfCDKV 227
Cdd:cd03244 131 tvveeggenlSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDC--TVLTIAHRLDTIID-SDRI 207
|
250
....*....|..
gi 777211855 228 LVMYAGQIVEFG 239
Cdd:cd03244 208 LVLDKGRVVEFD 219
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
1-264 |
1.15e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 89.79 E-value: 1.15e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLlEVKDLETSLKINNEWLatvENISFELSKGEVLGIVGESGCGKSILsksiikLLP-EKISKLSNGEVIFDGKRID 79
Cdd:PRK13647 1 MDNII-EVEDLHFRYKDGTKAL---KGLSLSIPEGSKTALLGPNGAGKSTL------LLHlNGIYLPQRGRVKVMGREVN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 80 TLNEKQlldIRGNdIAMIFQEP------MTALNPV-FTIKNQlvesikshkKISKKEANNLAKDLLKKVGIarqDEILNS 152
Cdd:PRK13647 71 AENEKW---VRSK-VGLVFQDPddqvfsSTVWDDVaFGPVNM---------GLDKDEVERRVEEALKAVRM---WDFRDK 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 153 YPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMYA 232
Cdd:PRK13647 135 PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGK-TVIVATHDVDLAAEWADQVIVLKE 213
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 777211855 233 GQIVEFGGiKEILHNP--------KHPYTQKLLSTIPKLK 264
Cdd:PRK13647 214 GRVLAEGD-KSLLTDEdiveqaglRLPLVAQIFEDLPELG 252
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
27-244 |
1.28e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 89.80 E-value: 1.28e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSilskSIIKLLpEKISKLSNGEVIFDGKRIDTLNE-KQLLDIRgNDIAMIFQEPMTAL 105
Cdd:PRK13649 25 DVNLTIEDGSYTAFIGHTGSGKS----TIMQLL-NGLHVPTQGSVRVDDTLITSTSKnKDIKQIR-KKVGLVFQFPESQL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 106 NPVFTIKNqlVESIKSHKKISKKEANNLAKDLLKKVGIArqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTT 185
Cdd:PRK13649 99 FEETVLKD--VAFGPQNFGVSQEEAEALAREKLALVGIS--ESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 186 ALDVTIQAQILDLLKELQkETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:PRK13649 175 GLDPKGRKELMTLFKKLH-QSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
27-236 |
2.16e-20 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 88.60 E-value: 2.16e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEKQlldiRGNDIAMIFQEPM--TA 104
Cdd:COG1101 24 GLNLTIEEGDFVTVIGSNGAGKSTLLNAIAGSLP-----PDSGSILIDGKDVTKLPEYK----RAKYIGRVFQDPMmgTA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lnPVFTIknqlvesikshkkiskkeANNLA-----------------------KDLLKKVGIARQDEiLNSYPHQLSGGM 161
Cdd:COG1101 95 --PSMTI------------------EENLAlayrrgkrrglrrgltkkrrelfRELLATLGLGLENR-LDTKVGLLSGGQ 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 162 RQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:COG1101 154 RQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEGRII 228
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
25-245 |
2.81e-20 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 87.67 E-value: 2.81e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSilskSIIKLLPeKISKLSNGEVIFDGkrIDtLNEKQLLDIRgNDIAMIFQEPMta 104
Cdd:cd03251 18 LRDISLDIPAGETVALVGPSGSGKS----TLVNLIP-RFYDVDSGRILIDG--HD-VRDYTLASLR-RQIGLVSQDVF-- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lnpVF--TIknqlvesikshkkiskkeANNLA--------KDLLKKVGIARQDEILNSYPH-----------QLSGGMRQ 163
Cdd:cd03251 87 ---LFndTV------------------AENIAygrpgatrEEVEEAARAANAHEFIMELPEgydtvigergvKLSGGQRQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVaEFCDKVLVMYAGQIVEFGGIKE 243
Cdd:cd03251 146 RIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNR--TTFVIAHRLSTI-ENADRIVVLEDGKIVERGTHEE 222
|
..
gi 777211855 244 IL 245
Cdd:cd03251 223 LL 224
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
25-236 |
2.88e-20 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 87.62 E-value: 2.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKllpekISKLSNGEVIFDGKRIDTLNEKQLLDIRgNDIAMIFQEPMTA 104
Cdd:PRK10908 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICG-----IERPSAGKIWFSGHDITRLKNREVPFLR-RQIGMIFQDHHLL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPvfTIKNQlVESIKSHKKISKKEANNLAKDLLKKVGIARQDEilnSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPT 184
Cdd:PRK10908 92 MDR--TVYDN-VAIPLIIAGASGDDIRRRVSAALDKVGLLDKAK---NFPIQLSGGEQQRVGIARAVVNKPAVLLADEPT 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 777211855 185 TALDVTIQAQILDLLKELQKeTQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:PRK10908 166 GNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
27-246 |
6.57e-20 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 87.87 E-value: 6.57e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGEVIFdgkrIDTLNEKQLLDIRgNDIAMIFQEPMTALN 106
Cdd:PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV----SSTSKQKEIKPVR-KKVGVVFQFPESQLF 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 107 PVFTIKNqlVESIKSHKKISKKEANNLAKDLLKKVGIARqdEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTA 186
Cdd:PRK13643 99 EETVLKD--VAFGPQNFGIPKEKAEKIAAEKLEMVGLAD--EFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAG 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 187 LDVTIQAQILDLLKELQkETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILH 246
Cdd:PRK13643 175 LDPKARIEMMQLFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
21-236 |
7.53e-20 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 86.01 E-value: 7.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 21 WLATVENISFELS--KGEVLGIVGESGCGKSILSKSIIK-LLPEkisklsNGEVIFDGKRIDTLnekqllDIRGNDIAMI 97
Cdd:cd03298 8 FSYGEQPMHFDLTfaQGEITAIVGPSGSGKSTLLNLIAGfETPQ------SGRVLINGVDVTAA------PPADRPVSML 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 98 FQEpmtalNPVF---TIKnQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILnsyPHQLSGGMRQRVMIAMAISCS 174
Cdd:cd03298 76 FQE-----NNLFahlTVE-QNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRL---PGELSGGERQRVALARVLVRD 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 777211855 175 PKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:cd03298 147 KPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
26-245 |
8.18e-20 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 87.35 E-value: 8.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQLldirGNDIAMIFQEPMTal 105
Cdd:PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-----AHGHVWLDGEHIQHYASKEV----ARRIGLLAQNATT-- 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 106 nPVFTIKNQLVES----IKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIAD 181
Cdd:PRK10253 93 -PGDITVQELVARgrypHQPLFTRWRKEDEEAVTKAMQATGIT---HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 182 EPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEIL 245
Cdd:PRK10253 169 EPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
24-245 |
9.50e-20 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 86.13 E-value: 9.50e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 24 TVENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKisklsnGEVIFDGKRIDTLNEKQLLdirgNDIAMIFQEPM 102
Cdd:cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYdPQK------GQILIDGIDIRDISRKSLR----SMIGVVLQDTF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 talnpVF--TIK------NQLVESIKSHKKISKKEANNLAKDLLKKVgiarqDEILNSYPHQLSGGMRQRVMIAMAISCS 174
Cdd:cd03254 88 -----LFsgTIMenirlgRPNATDEEVIEAAKEAGAHDFIMKLPNGY-----DTVLGENGGNLSQGERQLLAIARAMLRD 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 777211855 175 PKLLIADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVaEFCDKVLVMYAGQIVEFGGIKEIL 245
Cdd:cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGR--TSIIIAHRLSTI-KNADKILVLDDGKIIEEGTHDELL 225
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
25-290 |
1.30e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 86.96 E-value: 1.30e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKisklsnGEVIFDGkrIDTLNEKQLLDIRgNDIAMIFQEPMT 103
Cdd:PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLrPQK------GKVLVSG--IDTGDFSKLQGIR-KLVGIVFQNPET 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 alnpvftiknQLVESIKSHKKISKKEanNLA---KDLLKKVGIARQDEILNSY----PHQLSGGMRQRVMIAMAISCSPK 176
Cdd:PRK13644 89 ----------QFVGRTVEEDLAFGPE--NLClppIEIRKRVDRALAEIGLEKYrhrsPKTLSGGQGQCVALAGILTMEPE 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 177 LLIADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVaEFCDKVLVMYAGQIVEFGGIKEILHNPKhpyTQKL 256
Cdd:PRK13644 157 CLIFDEVTSMLDPDSGIAVLERIKKLHEKGK-TIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVLSDVS---LQTL 231
|
250 260 270
....*....|....*....|....*....|....*....
gi 777211855 257 LSTIPKLKEEQKRLETIEGIVP-----SIQAFHVNKCRF 290
Cdd:PRK13644 232 GLTPPSLIELAENLKMHGVVIPwentsSPSSFAEEICRL 270
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
25-235 |
1.49e-19 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 85.60 E-value: 1.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSilskSIIKLLpEKISKLSNGEVIFDGKRIDTLNEKQLLDIrgndIAMIFQEPMta 104
Cdd:cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKS----TVVALL-ENFYQPQGGQVLLDGKPISQYEHKYLHSK----VSLVGQEPV-- 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lnpVF--TIKNQLVESIKSHKKISKKEANNL--AKDLLKKVGIARQDEIlNSYPHQLSGGMRQRVMIAMAISCSPKLLIA 180
Cdd:cd03248 99 ---LFarSLQDNIAYGLQSCSFECVKEAAQKahAHSFISELASGYDTEV-GEKGSQLSGGQKQRVAIARALIRNPQVLIL 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 181 DEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVaEFCDKVLVMYAGQI 235
Cdd:cd03248 175 DEATSALDAESEQQVQQALYDWPERR--TVLVIAHRLSTV-ERADQILVLDGGRI 226
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
25-271 |
1.79e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 86.60 E-value: 1.79e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSilskSIIKLLPEKISKLSNGEVIFDGKRIDTLNE-KQLLDIRgNDIAMIFQEPMT 103
Cdd:PRK13645 27 LNNTSLTFKKNKVTCVIGTTGSGKS----TMIQLTNGLIISETGQTIVGDYAIPANLKKiKEVKRLR-KEIGLVFQFPEY 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALNPVFTIKNqlVESIKSHKKISKKEANNLAKDLLKKVGIARqdEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:PRK13645 102 QLFQETIEKD--IAFGPVNLGENKQEAYKKVPELLKLVQLPE--DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 184 TTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNpkhpytQKLLSTI--- 260
Cdd:PRK13645 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN------QELLTKIeid 251
|
250
....*....|..
gi 777211855 261 -PKLKEEQKRLE 271
Cdd:PRK13645 252 pPKLYQLMYKLK 263
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
6-239 |
1.85e-19 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 84.52 E-value: 1.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKIN--NEWLATVENISFELSKGEVLGIVGESGCGKSILSKSII-KLLPEKISklsnGEVIFDGKRIDtln 82
Cdd:cd03213 4 LSFRNLTVTVKSSpsKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAgRRTGLGVS----GEVLINGRPLD--- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 83 ekqlldirgndiamifqepmtalnpvftiknqlvesikshkkiskkeannlAKDLLKKVGIARQDEILnsYPHQ------ 156
Cdd:cd03213 77 ---------------------------------------------------KRSFRKIIGYVPQDDIL--HPTLtvretl 103
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 157 --------LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKeTQMAIMMITHDLS-VVAEFCDKV 227
Cdd:cd03213 104 mfaaklrgLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSsEIFELFDKL 182
|
250
....*....|..
gi 777211855 228 LVMYAGQIVEFG 239
Cdd:cd03213 183 LLLSQGRVIYFG 194
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
6-239 |
1.88e-19 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 84.29 E-value: 1.88e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKINNEWLatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLnEKQ 85
Cdd:cd03247 1 LSINNVSFSYPEQEQQV--LKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-----KPQQGEITLDGVPVSDL-EKA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LldirGNDIAMIFQEPMtalnpVF--TIKNqlvesikshkkiskkeanNLAKdllkkvgiarqdeilnsyphQLSGGMRQ 163
Cdd:cd03247 73 L----SSLISVLNQRPY-----LFdtTLRN------------------NLGR--------------------RFSGGERQ 105
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVAEFcDKVLVMYAGQIVEFG 239
Cdd:cd03247 106 RLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDK--TLIWITHHLTGIEHM-DKILFLENGKIIMQG 178
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
25-239 |
3.34e-19 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 84.51 E-value: 3.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIfdgkridtlnekqlldIRGNDIAMIfqEPMTA 104
Cdd:cd03220 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP-----PDSGTVT----------------VRGRVSSLL--GLGGG 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFT-IKNQLVesikshkkiskkeaNNLAKDLLKKVGIARQDEI-----LNSYPHQ----LSGGMRQRVMIAMAISCS 174
Cdd:cd03220 95 FNPELTgRENIYL--------------NGRLLGLSRKEIDEKIDEIiefseLGDFIDLpvktYSSGMKARLAFAIATALE 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 175 PKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMmITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVIL-VSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
26-239 |
3.89e-19 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 87.96 E-value: 3.89e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSilskSIIKLL-----PEKisklsnGEVIFDGKRIDTLNEKQLldiRGNdIAMIFQE 100
Cdd:PRK11160 357 KGLSLQIKAGEKVALLGRTGCGKS----TLLQLLtrawdPQQ------GEILLNGQPIADYSEAAL---RQA-ISVVSQR 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 101 PMtalnpVF--TIKNQLVesikshkkiskkEANNLAKD-----LLKKVGIAR---QDEILNSY----PHQLSGGMRQRVM 166
Cdd:PRK11160 423 VH-----LFsaTLRDNLL------------LAAPNASDealieVLQQVGLEKlleDDKGLNAWlgegGRQLSGGEQRRLG 485
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 777211855 167 IAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMaiMMITHDLSVVAEFcDKVLVMYAGQIVEFG 239
Cdd:PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTV--LMITHRLTGLEQF-DRICVMDNGQIIEQG 555
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
27-235 |
4.02e-19 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 87.80 E-value: 4.02e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKisklsNGEVIFDGKRIDTLNEKQLLD------------------ 88
Cdd:PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPAR-----GGRIMLNGKEINALSTAQRLArglvylpedrqssglyld 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 89 --IRGNDIAMIFQEPMTALNPvfTIKNQLVEsikshkkiskkeannlakdllkkvGIARQDEILNSYPHQ----LSGGMR 162
Cdd:PRK15439 356 apLAWNVCALTHNRRGFWIKP--ARENAVLE------------------------RYRRALNIKFNHAEQaartLSGGNQ 409
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 777211855 163 QRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
25-245 |
4.26e-19 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 86.29 E-value: 4.26e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILsksiIKLL-----PekisklSNGEVIFDGkRIDTLNEKQLLdirgNDIAMIF- 98
Cdd:COG4586 38 VDDISFTIEPGEIVGFIGPNGAGKSTT----IKMLtgilvP------TSGEVRVLG-YVPFKRRKEFA----RRIGVVFg 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 99 QepmtalnpvftiKNQL------VESIkshkkiskkeannlakDLLKKV-GIARQD---------------EILNSYPHQ 156
Cdd:COG4586 103 Q------------RSQLwwdlpaIDSF----------------RLLKAIyRIPDAEykkrldelvelldlgELLDTPVRQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 157 LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:COG4586 155 LSLGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRII 234
|
....*....
gi 777211855 237 EFGGIKEIL 245
Cdd:COG4586 235 YDGSLEELK 243
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
12-235 |
4.80e-19 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 87.37 E-value: 4.80e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 12 ETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQLLDirg 91
Cdd:PRK10762 255 EVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR-----TSGYVTLDGHEVVTRSPQDGLA--- 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 92 NDIAMI--------------FQEPM--TAL----NPVFTIKNQlvesikshkkiskkEANNLAKDLLKKVGI---ARQDE 148
Cdd:PRK10762 327 NGIVYIsedrkrdglvlgmsVKENMslTALryfsRAGGSLKHA--------------DEQQAVSDFIRLFNIktpSMEQA 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 149 ILNsyphqLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqMAIMMITHDLSVVAEFCDKVL 228
Cdd:PRK10762 393 IGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG-LSIILVSSEMPEVLGMSDRIL 466
|
....*..
gi 777211855 229 VMYAGQI 235
Cdd:PRK10762 467 VMHEGRI 473
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
25-236 |
5.18e-19 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 84.31 E-value: 5.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSilskSIIKLLPEKISKLSnGEVIFDGkRIDTLNEKQLLdirgNDIAMIFQEpmta 104
Cdd:cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKT----TTLKILSGLLQPTS-GEVRVAG-LVPWKRRKKFL----RRIGVVFGQ---- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lnpvftiKNQL------VESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLL 178
Cdd:cd03267 103 -------KTQLwwdlpvIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEIL 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:cd03267 176 FLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
2-236 |
6.37e-19 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 83.86 E-value: 6.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 2 NNVLLEVKDLETSLKINNewlatveNISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKisKLSNGEVIFDGKRidtL 81
Cdd:cd03234 7 WDVGLKAKNWNKYARILN-------DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG--GTTSGQILFNGQP---R 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 82 NEKQLLDIrgndIAMIFQEPMTAlnPVFTIKNQLVESIKSHKKISKKEANNLAKD---LLKKVGIARqdeILNSYPHQLS 158
Cdd:cd03234 75 KPDQFQKC----VAYVRQDDILL--PGLTVRETLTYTAILRLPRKSSDAIRKKRVedvLLRDLALTR---IGGNLVKGIS 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 159 GGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:cd03234 146 GGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIV 223
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
25-234 |
8.18e-19 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 86.91 E-value: 8.18e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiSKLSNGEVIFDGKridTLNEKQLLDIRGNDIAMIFQE---- 100
Cdd:PRK13549 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGE---ELQASNIRDTERAGIAIIHQElalv 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 101 -PMTALNPVFtIKNQLVESIKSHKKISKKEAnnlaKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLI 179
Cdd:PRK13549 95 kELSVLENIF-LGNEITPGGIMDYDAMYLRA----QKLLAQLKL---DINPATPVGNLGLGQQQLVEIAKALNKQARLLI 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 180 ADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQ 234
Cdd:PRK13549 167 LDEPTASLTESETAVLLDIIRDL-KAHGIACIYISHKLNEVKAISDTICVIRDGR 220
|
|
| thiQ |
TIGR01277 |
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ... |
15-235 |
1.04e-18 |
|
thiamine ABC transporter, ATP-binding protein; This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. [Transport and binding proteins, Other]
Pssm-ID: 130344 [Multi-domain] Cd Length: 213 Bit Score: 82.99 E-value: 1.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 15 LKINN-EWLATVENISFELS--KGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQlldirg 91
Cdd:TIGR01277 1 LALDKvRYEYEHLPMEFDLNvaDGEIVAIMGPSGAGKSTLLNLIAGFIEP-----ASGSIKVNDQSHTGLAPYQ------ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 92 NDIAMIFQEpmTALNPVFTIKNQLVESIKSHKKISKKEANNLaKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAI 171
Cdd:TIGR01277 70 RPVSMLFQE--NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKV-VDAAQQVGI---ADYLDRLPEQLSGGQRQRVALARCL 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 172 SCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:TIGR01277 144 VRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
25-230 |
1.04e-18 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 83.22 E-value: 1.04e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKisklsnGEVIFDGKRIDTLNEKQLLdirgNDIAMIFQEPMT 103
Cdd:PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIsPTS------GTLLFEGEDISTLKPEIYR----QQVSYCAQTPTL 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALNPVF-------TIKNQLVESikshkkiskkeaNNLAKDLLKkvgIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPK 176
Cdd:PRK10247 93 FGDTVYdnlifpwQIRNQQPDP------------AIFLDDLER---FALPDTILTKNIAELSGGEKQRISLIRNLQFMPK 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 777211855 177 LLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEfCDKVLVM 230
Cdd:PRK10247 158 VLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH-ADKVITL 210
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
27-249 |
1.34e-18 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 85.47 E-value: 1.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLlpEKISklsNGEVIFDGKRIDTLNEKQlldiRGndIAMIFQEpmTALN 106
Cdd:PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL--EDIT---SGDLFIGEKRMNDVPPAE----RG--VGMVFQS--YALY 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 107 PVFTIknqlvesikshkkiskkeANNLAKDL----LKKVGIARQ----------DEILNSYPHQLSGGMRQRVMIAMAIS 172
Cdd:PRK11000 88 PHLSV------------------AENMSFGLklagAKKEEINQRvnqvaevlqlAHLLDRKPKALSGGQRQRVAIGRTLV 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 173 CSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPK 249
Cdd:PRK11000 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
6-265 |
1.53e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 84.37 E-value: 1.53e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLEtslKINNEWLAT----VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLsngEVIFDGKRIDTL 81
Cdd:PRK13651 3 IKVKNIV---KIFNKKLPTelkaLDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI---EWIFKDEKNKKK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 82 NE-------------------KQLLDIRgNDIAMIFQ-----------EPMTALNPV-FTIKNQlvesikshkkiskkEA 130
Cdd:PRK13651 77 TKekekvleklviqktrfkkiKKIKEIR-RRVGVVFQfaeyqlfeqtiEKDIIFGPVsMGVSKE--------------EA 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 131 NNLAKDLLKKVGIarQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQmAI 210
Cdd:PRK13651 142 KKRAAKYIELVGL--DESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK-TI 218
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 211 MMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPK-----HPYTQKLLSTIPKLKE 265
Cdd:PRK13651 219 ILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKflienNMEPPKLLNFVNKLEK 278
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
25-246 |
1.57e-18 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 83.21 E-value: 1.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKridtlnekqlldirgndIAMIFqEPMTA 104
Cdd:COG1134 42 LKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILE-----PTSGRVEVNGR-----------------VSALL-ELGAG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFT----IK-NQLVesikshkkiskkeaNNLAKDLLKkvgiARQDEI-----LNSYPHQ----LSGGMRQRVMIAMA 170
Cdd:COG1134 99 FHPELTgrenIYlNGRL--------------LGLSRKEID----EKFDEIvefaeLGDFIDQpvktYSSGMRARLAFAVA 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 171 ISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILH 246
Cdd:COG1134 161 TAVDPDILLVDEVLAVGDAAFQKKCLARIRELRESGR-TVIFVSHSMGAVRRLCDRAIWLEKGRLVMDGDPEEVIA 235
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
25-237 |
1.90e-18 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 82.26 E-value: 1.90e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEKQlldirgNDIAMIFQEPmtA 104
Cdd:cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI-----KPDSGEITFDGKSYQKNIEAL------RRIGALIEAP--G 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKNQLvesikshkkiskkeannLAKDLLKKVGIARQDEILN-----SYPH----QLSGGMRQRVMIAMAISCSP 175
Cdd:cd03268 83 FYPNLTARENL-----------------RLLARLLGIRKKRIDEVLDvvglkDSAKkkvkGFSLGMKQRLGIALALLGNP 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 777211855 176 KLLIADEPTTALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAGQIVE 237
Cdd:cd03268 146 DLLILDEPTNGLDPDGIKELRELILSLRDQ-GITVLISSHLLSEIQKVADRIGIINKGKLIE 206
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
27-266 |
2.86e-18 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 84.37 E-value: 2.86e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKsIIKLLPEKisklSNGEVIFDGKRIDTLNEkqlldiRGNDIAMIFQ-----EP 101
Cdd:PRK10851 20 DISLDIPSGQMVALLGPSGSGKTTLLR-IIAGLEHQ----TSGHIRFHGTDVSRLHA------RDRKVGFVFQhyalfRH 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 MTAL-NPVFTIKnqlveSIKSHKKISKKEANNLAKDLLKKVGIARqdeILNSYPHQLSGGMRQRVMIAMAISCSPKLLIA 180
Cdd:PRK10851 89 MTVFdNIAFGLT-----VLPRRERPNAAAIKAKVTQLLEMVQLAH---LADRYPAQLSGGQKQRVALARALAVEPQILLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 181 DEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLSTI 260
Cdd:PRK10851 161 DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMGEV 240
|
....*.
gi 777211855 261 PKLKEE 266
Cdd:PRK10851 241 NRLQGT 246
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
26-237 |
3.44e-18 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 84.84 E-value: 3.44e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSILSKSiikllpekiskLS--------NGEVIFDGKridtlnEKQLLDIRGND---I 94
Cdd:NF040905 18 DDVNLSVREGEIHALCGENGAGKSTLMKV-----------LSgvyphgsyEGEILFDGE------VCRFKDIRDSEalgI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 95 AMIFQEpmTALNPVFTI-----------KNQLVESIkshkkiskkEANNLAKDLLKKVGiarqdeiLNSYPHQLSG---- 159
Cdd:NF040905 81 VIIHQE--LALIPYLSIaeniflgneraKRGVIDWN---------ETNRRARELLAKVG-------LDESPDTLVTdigv 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAImMITHDLSVVAEFCDKVLVMYAGQIVE 237
Cdd:NF040905 143 GKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITSI-IISHKLNEIRRVADSITVLRDGRTIE 219
|
|
| type_I_sec_PrtD |
TIGR01842 |
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in ... |
24-245 |
4.21e-18 |
|
type I secretion system ABC transporter, PrtD family; Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 200134 [Multi-domain] Cd Length: 544 Bit Score: 84.71 E-value: 4.21e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 24 TVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQLldirGNDIAMIFQ--EP 101
Cdd:TIGR01842 333 TLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPP-----TSGSVRLDGADLKQWDRETF----GKHIGYLPQdvEL 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 MTAlnpvfTIKNQLVESIKSHKKISKKEAnnlAKdllkkvgIARQDEILNSYPH-----------QLSGGMRQRVMIAMA 170
Cdd:TIGR01842 404 FPG-----TVAENIARFGENADPEKIIEA---AK-------LAGVHELILRLPDgydtvigpggaTLSGGQRQRIALARA 468
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 171 ISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAImMITHDLSVVaEFCDKVLVMYAGQIVEFGGIKEIL 245
Cdd:TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVV-VITHRPSLL-GCVDKILVLQDGRIARFGERDEVL 541
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
28-248 |
6.76e-18 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 81.52 E-value: 6.76e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 28 ISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekisklSNGEVIFDGKRIDTLNEKQLLDIRGndiAMIFQEPMTALNP 107
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP------GSGSIQFAGQPLEAWSAAELARHRA---YLSQQQTPPFAMP 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 108 VFtiknQLVESIKSHKKISKKEANNLaKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAI-----SCSP--KLLIA 180
Cdd:PRK03695 86 VF----QYLTLHQPDKTRTEAVASAL-NEVAEALGL---DDKLGRSVNQLSGGEWQRVRLAAVVlqvwpDINPagQLLLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 181 DEPTTALDVTiQAQILD-LLKELQkETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNP 248
Cdd:PRK03695 158 DEPMNSLDVA-QQAALDrLLSELC-QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPE 224
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
25-258 |
1.42e-17 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 80.98 E-value: 1.42e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGEVIFDGKridTLNEKQL--LDIRgNDIAMIFQEPm 102
Cdd:PRK14243 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGK---NLYAPDVdpVEVR-RRIGMVFQKP- 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 talNP---------VFTIK--------NQLVESIKSHKKISkkeanNLAKDLLKKVGIArqdeilnsyphqLSGGMRQRV 165
Cdd:PRK14243 101 ---NPfpksiydniAYGARingykgdmDELVERSLRQAALW-----DEVKDKLKQSGLS------------LSGGQQQRL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 166 MIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKetQMAIMMITHDLSVVAEFCDKVLVMYA---------GQIV 236
Cdd:PRK14243 161 CIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDMTAFFNVeltegggryGYLV 238
|
250 260
....*....|....*....|..
gi 777211855 237 EFGGIKEILHNPKHPYTQKLLS 258
Cdd:PRK14243 239 EFDRTEKIFNSPQQQATRDYVS 260
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
25-245 |
1.59e-17 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 80.82 E-value: 1.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKisklsnGEVIFDGKRIDtLNEKQLLDIRgNDIAMIFQEPMT 103
Cdd:PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLrPQK------GAVLWQGKPLD-YSKRGLLALR-QQVATVFQDPEQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 AL-------NPVFTIKNQLVesikshkkiskKEANnlakdllkkvgIARQ-DEIL-----NSYPHQ----LSGGMRQRVM 166
Cdd:PRK13638 89 QIfytdidsDIAFSLRNLGV-----------PEAE-----------ITRRvDEALtlvdaQHFRHQpiqcLSHGQKKRVA 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 167 IAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMiTHDLSVVAEFCDKVLVMYAGQIVEFGGIKEIL 245
Cdd:PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIIS-SHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
26-256 |
1.71e-17 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 80.96 E-value: 1.71e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSILSKSII-KLLPEKisklsnGEVIFDGKRIDTLNEKQLLDIRgNDIAMIFQEP--M 102
Cdd:PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGgQIAPDH------GEILFDGENIPAMSRSRLYTVR-KRMSMLFQSGalF 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 TALNpVFT-------IKNQLVESIKSHKKISKKEAnnlakdllkkVGIARQDEILnsyPHQLSGGMRQRVMIAMAISCSP 175
Cdd:PRK11831 97 TDMN-VFDnvayplrEHTQLPAPLLHSTVMMKLEA----------VGLRGAAKLM---PSELSGGMARRAALARAIALEP 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 176 KLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQK 255
Cdd:PRK11831 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQF 242
|
.
gi 777211855 256 L 256
Cdd:PRK11831 243 L 243
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
4-235 |
4.69e-17 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 81.51 E-value: 4.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 4 VLLEVKDLeTSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKisklSNGEVIFDGKRIDTLNE 83
Cdd:PRK13549 258 VILEVRNL-TAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR----WEGEIFIDGKPVKIRNP 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 84 KQLLDirgNDIAMIfqepmtalnPVFTIKNQLVESIKSHKKISKKEANNLAK----DLLKKVGIARQD----EILNSYPH 155
Cdd:PRK13549 333 QQAIA---QGIAMV---------PEDRKRDGIVPVMGVGKNITLAALDRFTGgsriDDAAELKTILESiqrlKVKTASPE 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 156 Q----LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMY 231
Cdd:PRK13549 401 LaiarLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQ-GVAIIVISSELPEVLGLSDRVLVMH 479
|
....
gi 777211855 232 AGQI 235
Cdd:PRK13549 480 EGKL 483
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
25-230 |
5.69e-17 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 81.56 E-value: 5.69e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQLLDirgnDIAMIFQEP-MT 103
Cdd:TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-----TEGSIAVNGVPLADADADSWRD----QIAWVPQHPfLF 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALnpvfTIKNQLVESIKSHKKISKKEANNLAkDLLKKVGIARQ--DEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIAD 181
Cdd:TIGR02857 409 AG----TIAENIRLARPDASDAEIREALERA-GLDEFVAALPQglDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLD 483
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 777211855 182 EPTTALDVTIQAQILDLLKEL-QKETqmaIMMITHDLSVVAEfCDKVLVM 230
Cdd:TIGR02857 484 EPTAHLDAETEAEVLEALRALaQGRT---VLLVTHRLALAAL-ADRIVVL 529
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
25-249 |
7.35e-17 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 78.35 E-value: 7.35e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNekqlLDIRGND-IAMIFQEPmt 103
Cdd:cd03218 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV-----KPDSGKILLDGQDITKLP----MHKRARLgIGYLPQEA-- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 alnPVF---TIKNQLvESIKSHKKISKKEANNLAKDLLKKVGIARqdeILNSYPHQLSGGMRQRVMIAMAISCSPKLLIA 180
Cdd:cd03218 85 ---SIFrklTVEENI-LAVLEIRGLSKKEREEKLEELLEEFHITH---LRKSKASSLSGGERRRVEIARALATNPKFLLL 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 181 DEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHNPK 249
Cdd:cd03218 158 DEPFAGVDPIAVQDIQKIIKIL-KDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-244 |
7.99e-17 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 81.00 E-value: 7.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLkinnEWLATVENISFELSKGEVLGIVGESGCGKSIL-------------SKSIIKLL-----------PE 61
Cdd:TIGR03269 1 IEVKNLTKKF----DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLmhvlrgmdqyeptSGRIIYHValcekcgyverPS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 62 KI--------SKLSNGEVIFDGkridtLNEKQLLDIRgNDIAMIFQEPMTALNPVFTIKNqlVESIKSHKKISKKEANNL 133
Cdd:TIGR03269 77 KVgepcpvcgGTLEPEEVDFWN-----LSDKLRRRIR-KRIAIMLQRTFALYGDDTVLDN--VLEALEEIGYEGKEAVGR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 134 AKDLLKKVGIARQdeiLNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMI 213
Cdd:TIGR03269 149 AVDLIEMVQLSHR---ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT 225
|
250 260 270
....*....|....*....|....*....|.
gi 777211855 214 THDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:TIGR03269 226 SHWPEVIEDLSDKAIWLENGEIKEEGTPDEV 256
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
25-236 |
8.78e-17 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 80.64 E-value: 8.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISklsNGEVIFDGKRidtLNEKQLLDIRGNDIAMIFQEPMta 104
Cdd:TIGR02633 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTW---DGEIYWSGSP---LKASNIRDTERAGIVIIHQELT-- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKNQLV---ESIKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYP-HQLSGGMRQRVMIAMAISCSPKLLIA 180
Cdd:TIGR02633 89 LVPELSVAENIFlgnEITLPGGRMAYNAMYLRAKNLLRELQL---DADNVTRPvGDYGGGQQQLVEIAKALNKQARLLIL 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 181 DEPTTALDVTIQAQILDLLKELQKETqMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:TIGR02633 166 DEPSSSLTEKETEILLDIIRDLKAHG-VACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
29-236 |
1.15e-16 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 77.70 E-value: 1.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 29 SFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKisklsNGEVIFDGKRIDTLNEKQlldirgNDIAMIFQEpmTALNPV 108
Cdd:PRK10771 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA-----SGSLTLNGQDHTTTPPSR------RPVSMLFQE--NNLFSH 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 109 FTIknqlvesikshkkiskkeANNLA-------------KDLLKKvgIARQ---DEILNSYPHQLSGGMRQRVMIAMAIS 172
Cdd:PRK10771 86 LTV------------------AQNIGlglnpglklnaaqREKLHA--IARQmgiEDLLARLPGQLSGGQRQRVALARCLV 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 173 CSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA 209
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
7-260 |
2.06e-16 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 77.43 E-value: 2.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 7 EVKDLetSLKINNEwlATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEKQL 86
Cdd:COG4604 3 EIKNV--SKRYGGK--VVLDDVSLTIPKGGITALIGPNGAGKSTLLSMISRLLP-----PDSGEVLVDGLDVATTPSREL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 87 LDIrgndIAMIFQEPmtALNPVFTIKnQLVesikshkkiskkeA--------NNLAKDLLKKV--GIARQD--EILNSYP 154
Cdd:COG4604 74 AKR----LAILRQEN--HINSRLTVR-ELV-------------AfgrfpyskGRLTAEDREIIdeAIAYLDleDLADRYL 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 155 HQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQ 234
Cdd:COG4604 134 DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKDGR 213
|
250 260
....*....|....*....|....*.
gi 777211855 235 IVEFGGIKEILhnpkhpyTQKLLSTI 260
Cdd:COG4604 214 VVAQGTPEEII-------TPEVLSDI 232
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
25-237 |
2.10e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 79.83 E-value: 2.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKllpekISKLSNGEVIFDGKRIDTLNEkqlLDIRGNDIAMIFQEPM-T 103
Cdd:PRK09700 279 VRDISFSVCRGEILGFAGLVGSGRTELMNCLFG-----VDKRAGGEIRLNGKDISPRSP---LDAVKKGMAYITESRRdN 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALNPVFTIKnQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPH-------QLSGGMRQRVMIAMAISCSPK 176
Cdd:PRK09700 351 GFFPNFSIA-QNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHsvnqnitELSGGNQQKVLISKWLCCCPE 429
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 777211855 177 LLIADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMYAGQIVE 237
Cdd:PRK09700 430 VIIFDEPTRGIDVGAKAEIYKVMRQLADDGK-VILMVSSELPEIITVCDRIAVFCEGRLTQ 489
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
28-248 |
3.20e-16 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 77.14 E-value: 3.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 28 ISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQLldirGNDIAMIFQ-----EPM 102
Cdd:PRK10575 30 LSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-----SEGEILLDAQPLESWSSKAF----ARKVAYLPQqlpaaEGM 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 T--------------ALNPVFTIKNQLVEsikshkkiskkEANNLakdllkkVGiarqdeiLNSYPHQL----SGGMRQR 164
Cdd:PRK10575 101 TvrelvaigrypwhgALGRFGAADREKVE-----------EAISL-------VG-------LKPLAHRLvdslSGGERQR 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 165 VMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
|
....
gi 777211855 245 LHNP 248
Cdd:PRK10575 236 MRGE 239
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
150-255 |
3.84e-16 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 77.99 E-value: 3.84e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 150 LNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLV 229
Cdd:PRK11144 122 LDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVV 201
|
90 100
....*....|....*....|....*..
gi 777211855 230 MYAGQIVEFGGIKEILHNPK-HPYTQK 255
Cdd:PRK11144 202 LEQGKVKAFGPLEEVWASSAmRPWLPK 228
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
6-248 |
4.68e-16 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 78.73 E-value: 4.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETsLKINNEWLAtvENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGEvifdgkridTLNEKQ 85
Cdd:PRK11174 350 IEAEDLEI-LSPDGKTLA--GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGI---------ELRELD 417
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRGNdIAMIFQEPMTalnPVFTIK-NQLVesikshkkiskkeANNLAKD-----LLKKVGIarqDEILNSYPH---- 155
Cdd:PRK11174 418 PESWRKH-LSWVGQNPQL---PHGTLRdNVLL-------------GNPDASDeqlqqALENAWV---SEFLPLLPQgldt 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 156 -------QLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAImMITHDLSVVAEfCDKVL 228
Cdd:PRK11174 478 pigdqaaGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA-SRRQTTL-MVTHQLEDLAQ-WDQIW 554
|
250 260
....*....|....*....|
gi 777211855 229 VMYAGQIVEFGGIKEILHNP 248
Cdd:PRK11174 555 VMQDGQIVQQGDYAELSQAG 574
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
26-245 |
7.78e-16 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 78.14 E-value: 7.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSilskSIIKLLpEKISKLSNGEVIFDGkriDTLNEKQLLDIRgNDIAMIFQEpMTAL 105
Cdd:PRK11176 360 RNINFKIPAGKTVALVGRSGSGKS----TIANLL-TRFYDIDEGEILLDG---HDLRDYTLASLR-NQVALVSQN-VHLF 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 106 NPvfTIknqlvesikshkkiskkeANNLA---------KDLLKKVGIARQDEILNSYPH-----------QLSGGMRQRV 165
Cdd:PRK11176 430 ND--TI------------------ANNIAyarteqysrEQIEEAARMAYAMDFINKMDNgldtvigengvLLSGGQRQRI 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 166 MIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVaEFCDKVLVMYAGQIVEFGGIKEIL 245
Cdd:PRK11176 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSLVIAHRLSTI-EKADEILVVEDGEIVERGTHAELL 566
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
27-239 |
9.15e-16 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 77.94 E-value: 9.15e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSilskSIIKLL-----PekisklSNGEVIFDGKRIDTLNEKQLldiRGnDIAMIFQEp 101
Cdd:COG5265 376 GVSFEVPAGKTVAIVGPSGAGKS----TLARLLfrfydV------TSGRILIDGQDIRDVTQASL---RA-AIGIVPQD- 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 mTALnpvF--TIknqlvesikshkkiskkeANNLA--------KDLLKKVGIARQDEILNSYPHQ-----------LSGG 160
Cdd:COG5265 441 -TVL---FndTI------------------AYNIAygrpdaseEEVEAAARAAQIHDFIESLPDGydtrvgerglkLSGG 498
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 161 MRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAImmITHDLSVVAEfCDKVLVMYAGQIVEFG 239
Cdd:COG5265 499 EKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVARGRTTLV--IAHRLSTIVD-ADEILVLEAGRIVERG 574
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
6-246 |
1.14e-15 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 75.10 E-value: 1.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLEtslkinnewlATVE------NISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKlsnGEVIFDGKRId 79
Cdd:COG0396 1 LEIKNLH----------VSVEgkeilkGVNLTIKPGEVHAIMGPNGSGKSTLAKVLMGHPKYEVTS---GSILLDGEDI- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 80 tLNekqlLDI-----RGndIAMIFQEPM------------TALNPVftiknqlvesikSHKKISKKEANNLAKDLLKKVG 142
Cdd:COG0396 67 -LE----LSPderarAG--IFLAFQYPVeipgvsvsnflrTALNAR------------RGEELSAREFLKLLKEKMKELG 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 143 IArqDEILNSYPHQ-LSGGMRQRVMIAMAISCSPKLLIADEPTTALDV-TIQAqILDLLKELQKEtQMAIMMITH----- 215
Cdd:COG0396 128 LD--EDFLDRYVNEgFSGGEKKRNEILQMLLLEPKLAILDETDSGLDIdALRI-VAEGVNKLRSP-DRGILIITHyqril 203
|
250 260 270
....*....|....*....|....*....|.
gi 777211855 216 DLSVVaefcDKVLVMYAGQIVEFGGiKEILH 246
Cdd:COG0396 204 DYIKP----DFVHVLVDGRIVKSGG-KELAL 229
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
3-235 |
1.47e-15 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 77.17 E-value: 1.47e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 3 NVLLEVKDLeTSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISklsnGEVIFDGKRIDTLN 82
Cdd:TIGR02633 255 DVILEARNL-TCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFE----GNVFINGKPVDIRN 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 83 EKQllDIRGNdIAMIFQE-PMTALNPVFTI-KNQLVESIKSHKKISKKEANNLAKDLLKKVgiaRQDEILNSYPH----Q 156
Cdd:TIGR02633 330 PAQ--AIRAG-IAMVPEDrKRHGIVPILGVgKNITLSVLKSFCFKMRIDAAAELQIIGSAI---QRLKVKTASPFlpigR 403
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 157 LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqMAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:TIGR02633 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG-VAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
27-235 |
2.72e-15 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 74.33 E-value: 2.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILsksiIKLLPeKISKLSNGEVIfdgkridtLNEKQLLDIRgNDIAMIFQEpmTALN 106
Cdd:PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTL----LRLLA-GLETPSAGELL--------AGTAPLAEAR-EDTRLMFQD--ARLL 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 107 PVFTIKNQLVESIKSHKKISKKEAnnlakdlLKKVGIArqdEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTA 186
Cdd:PRK11247 94 PWKKVIDNVGLGLKGQWRDAALQA-------LAAVGLA---DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGA 163
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 777211855 187 LDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:PRK11247 164 LDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
2-271 |
3.07e-15 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 76.08 E-value: 3.07e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 2 NNVLLEVKDLETSLKiNNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpekisklsngevifdgkridTL 81
Cdd:PRK13545 18 NKPFDKLKDLFFRSK-DGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV---------------------TM 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 82 NEKQLLDIRGND--IAMifqepMTALNPVFT-IKNqlVESIKSHKKISKKEANNLAKDLLKKVGIARqdeILNSYPHQLS 158
Cdd:PRK13545 76 PNKGTVDIKGSAalIAI-----SSGLNGQLTgIEN--IELKGLMMGLTKEKIKEIIPEIIEFADIGK---FIYQPVKTYS 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 159 GGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEF 238
Cdd:PRK13545 146 SGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEF-KEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEY 224
|
250 260 270
....*....|....*....|....*....|...
gi 777211855 239 GGIKEILHNpkhpYTQKLLSTIPKLKEEQKRLE 271
Cdd:PRK13545 225 GDIKEVVDH----YDEFLKKYNQMSVEERKDFR 253
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
27-287 |
3.91e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 75.85 E-value: 3.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKlsNGEVIFDGKRIDTlneKQLLDIRgndiAMIFQEPMtaLN 106
Cdd:TIGR00955 43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKG--SGSVLLNGMPIDA---KEMRAIS----AYVQQDDL--FI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 107 PVFTIKNQLVESIKShkkiskkeanNLAKDLLKKVGIARQDEILNS------------YPHQ---LSGGMRQRVMIAMAI 171
Cdd:TIGR00955 112 PTLTVREHLMFQAHL----------RMPRRVTKKEKRERVDEVLQAlglrkcantrigVPGRvkgLSGGERKRLAFASEL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 172 SCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEIL------ 245
Cdd:TIGR00955 182 LTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVpffsdl 261
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 777211855 246 -------HNPKHPYtQKLLSTIPklKEEQKRLETIEGIvpsIQAFHVNK 287
Cdd:TIGR00955 262 ghpcpenYNPADFY-VQVLAVIP--GSENESRERIEKI---CDSFAVSD 304
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
26-240 |
4.42e-15 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 75.49 E-value: 4.42e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFD-GKRIDTLneKQllDIRGNDIAMIFQEPMTA 104
Cdd:COG0488 15 DDVSLSINPGDRIGLVGRNGAGKSTLLKILAGEL-----EPDSGEVSIPkGLRIGYL--PQ--EPPLDDDLTVLDTVLDG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKNQLVESIKSHKKISKK-----------------EANNLAKDLLKKVGIARQDeiLNSYPHQLSGGMRQRVMI 167
Cdd:COG0488 86 DAELRALEAELEELEAKLAEPDEDlerlaelqeefealggwEAEARAEEILSGLGFPEED--LDRPVSELSGGWRRRVAL 163
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 168 AMAISCSPKLLIADEPTTALDV-TIQ--AQILdllkelqKETQMAIMMITHD---LSVVaefCDKVLVMYAGQIVEFGG 240
Cdd:COG0488 164 ARALLSEPDLLLLDEPTNHLDLeSIEwlEEFL-------KNYPGTVLVVSHDryfLDRV---ATRILELDRGKLTLYPG 232
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-248 |
5.72e-15 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 73.49 E-value: 5.72e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLetSLKINNewLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDT 80
Cdd:PRK11300 1 MSQPLLSVSGL--MMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY-----KPTGGTILLRGQHIEG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LNEKQLLD---IRGNDIAMIFQEpMTALNPVFTIKNQLVES-------IKSHKKISKKEANNLAKDLLKKVGIArqdEIL 150
Cdd:PRK11300 72 LPGHQIARmgvVRTFQHVRLFRE-MTVIENLLVAQHQQLKTglfsgllKTPAFRRAESEALDRAATWLERVGLL---EHA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 151 NSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVM 230
Cdd:PRK11300 148 NRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227
|
250
....*....|....*...
gi 777211855 231 YAGQIVEFGGIKEILHNP 248
Cdd:PRK11300 228 NQGTPLANGTPEEIRNNP 245
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
6-217 |
1.42e-14 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 74.32 E-value: 1.42e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSLKINNEWLatvENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLNEKQ 85
Cdd:TIGR02868 335 LELRDLSAGYPGAPPVL---DGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP-----LQGEVTLDGVPVSSLDQDE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIrgndIAMIFQEPMtalnpVF--TIKNQLVesikshkkiskkeannLAK---------DLLKKVGIArqdEILNSYP 154
Cdd:TIGR02868 407 VRRR----VSVCAQDAH-----LFdtTVRENLR----------------LARpdatdeelwAALERVGLA---DWLRALP 458
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 155 H-----------QLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLkeLQKETQMAIMMITHDL 217
Cdd:TIGR02868 459 DgldtvlgeggaRLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHHL 530
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
28-261 |
1.43e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 74.63 E-value: 1.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 28 ISFELSKGEVLGIVGESGCGKSILSKSIIKllpekISKLSNGEVIFDGKRIDTLNekqLLDIRgNDIAMIFQEPMTALNP 107
Cdd:PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFR-----IVELEKGRIMIDDCDVAKFG---LTDLR-RVLSIIPQSPVLFSGT 1325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 108 V-FTIkNQLVESIKSHKKISKKEANnlAKDLLKKVGIARQDEILNSyPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTA 186
Cdd:PLN03232 1326 VrFNI-DPFSEHNDADLWEALERAH--IKDVIDRNPFGLDAEVSEG-GENFSVGQRQLLSLARALLRRSKILVLDEATAS 1401
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 187 LDVTIQAQILDLLKELQKETQMaiMMITHDLSVVAEfCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLSTIP 261
Cdd:PLN03232 1402 VDVRTDSLIQRTIREEFKSCTM--LVIAHRLNTIID-CDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
27-239 |
1.84e-14 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 72.22 E-value: 1.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEvifdgkrIDTLNEKQLLDIRGNDIAMIFQ-EPMTAL 105
Cdd:PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGFV-----RLASGK-------ISILGQPTRQALQKNLVAYVPQsEEVDWS 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 106 NPVftiknqLVESIKSHKKISKKEANNLAKDLLKKV---GIARQDeiLNSYPH----QLSGGMRQRVMIAMAISCSPKLL 178
Cdd:PRK15056 93 FPV------LVEDVVMMGRYGHMGWLRRAKKRDRQIvtaALARVD--MVEFRHrqigELSGGQKKRVFLARAIAQQGQVI 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVlVMYAGQIVEFG 239
Cdd:PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGK-TMLVSTHNLGSVTEFCDYT-VMVKGTVLASG 223
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
27-228 |
1.96e-14 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 71.68 E-value: 1.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGK-RIDTLNEKQLLDIrgndiamifQEPMTA- 104
Cdd:PRK09544 22 DVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-----DEGVIKRNGKlRIGYVPQKLYLDT---------TLPLTVn 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 ----LNPvftiknqlvesikshkkiskkeaNNLAKDLLKKVGIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIA 180
Cdd:PRK09544 88 rflrLRP-----------------------GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 777211855 181 DEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVL 228
Cdd:PRK09544 145 DEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVL 192
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
25-247 |
2.35e-14 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 71.46 E-value: 2.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRID--TLNEKQLldiRGndIAMIFQEPm 102
Cdd:PRK10895 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-----DAGNIIIDDEDISllPLHARAR---RG--IGYLPQEA- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 tALNPVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADE 182
Cdd:PRK10895 88 -SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE---HLRDSMGQSLSGGERRRVEIARALAANPKFILLDE 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 183 PTTALDvtiQAQILDLLKELQ--KETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILHN 247
Cdd:PRK10895 164 PFAGVD---PISVIDIKRIIEhlRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
28-261 |
3.40e-14 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 73.62 E-value: 3.40e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 28 ISFELSKGEVLGIVGESGCGKSilskSIIKLLpEKISKLSNGEVIFDGKRIDTLNekqLLDIRGNdIAMIFQEPMT---- 103
Cdd:PLN03130 1258 LSFEISPSEKVGIVGRTGAGKS----SMLNAL-FRIVELERGRILIDGCDISKFG---LMDLRKV-LGIIPQAPVLfsgt 1328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ---ALNPvFTIKN--QLVESIkshkkiskkEANNLaKDLLKKVGIARQDEILNSyPHQLSGGMRQRVMIAMAISCSPKLL 178
Cdd:PLN03130 1329 vrfNLDP-FNEHNdaDLWESL---------ERAHL-KDVIRRNSLGLDAEVSEA-GENFSVGQRQLLSLARALLRRSKIL 1396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKETQMAImmITHDLSVVAEfCDKVLVMYAGQIVEFGGIKEILHNPKHPYTQKLLS 258
Cdd:PLN03130 1397 VLDEATAAVDVRTDALIQKTIREEFKSCTMLI--IAHRLNTIID-CDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQS 1473
|
...
gi 777211855 259 TIP 261
Cdd:PLN03130 1474 TGA 1476
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
6-252 |
4.56e-14 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 69.86 E-value: 4.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLetSLKINNEwlATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKlsnGEVIFDGKRIDTL--NE 83
Cdd:cd03217 1 LEIKDL--HVSVGGK--EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTE---GEILFKGEDITDLppEE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 84 KQLLDIrgndiAMIFQEPMTalnpVFTIKNqlvesikshkkiskkeannlaKDLLKKVGIArqdeilnsyphqLSGGMRQ 163
Cdd:cd03217 74 RARLGI-----FLAFQYPPE----IPGVKN---------------------ADFLRYVNEG------------FSGGEKK 111
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqMAIMMITHdLSVVAEFC--DKVLVMYAGQIVEFGGI 241
Cdd:cd03217 112 RNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEG-KSVLIITH-YQRLLDYIkpDRVHVLYDGRIVKSGDK 189
|
250
....*....|.
gi 777211855 242 KEILHNPKHPY 252
Cdd:cd03217 190 ELALEIEKKGY 200
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
23-237 |
4.59e-14 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 71.79 E-value: 4.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 23 ATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSN-GEVIFDGKRIDTLNekqlldirgndIAMIFQep 101
Cdd:PRK13536 55 AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVlGVPVPARARLARAR-----------IGVVPQ-- 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 MTALNPVFTIK-NQLVESIKSHKKISKKEAnnLAKDLLKkvgIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIA 180
Cdd:PRK13536 122 FDNLDLEFTVReNLLVFGRYFGMSTREIEA--VIPSLLE---FARLESKADARVSDLSGGMKRRLTLARALINDPQLLIL 196
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 181 DEPTTALDVTIQAQILDLLKELQKETqMAIMMITHDLSVVAEFCDKVLVMYAG-QIVE 237
Cdd:PRK13536 197 DEPTTGLDPHARHLIWERLRSLLARG-KTILLTTHFMEEAERLCDRLCVLEAGrKIAE 253
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
157-222 |
5.32e-14 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 69.57 E-value: 5.32e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 157 LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAE 222
Cdd:NF040873 120 LSGGQRQRALLAQGLAQEADLLLLDEPTTGLDAESRERIIALLAEE-HARGATVVVVTHDLELVRR 184
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
6-230 |
7.43e-14 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 67.86 E-value: 7.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLetSLKINNEWLatVENISFELSKGEVLGIVGESGCGKSILsksiIKLLPEKIsKLSNGEVIFDgkridtlnekq 85
Cdd:cd03221 1 IELENL--SKTYGGKLL--LKDISLTINPGDRIGLVGRNGAGKSTL----LKLIAGEL-EPDEGIVTWG----------- 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 lldirgndiamifqepmtalnpvftiknqlvesikshkkiskkeannlakdllKKVGIArqdeilnsYPHQLSGGMRQRV 165
Cdd:cd03221 61 -----------------------------------------------------STVKIG--------YFEQLSGGEKMRL 79
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 166 MIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKetqmAIMMITHDLSVVAEFCDKVLVM 230
Cdd:cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPG----TVILVSHDRYFLDQVATKIIEL 140
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
25-244 |
7.91e-14 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 71.74 E-value: 7.91e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIikllpEKISKLSNGEVIFDGKRIDTLNEKqllDIRGNDIAMIFQE---- 100
Cdd:PRK09700 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVL-----SGIHEPTKGTITINNINYNKLDHK---LAAQLGIGIIYQElsvi 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 101 -PMTALNPVFtIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQdeiLNSYPHQLSGGMRQRVMIAMAISCSPKLLI 179
Cdd:PRK09700 93 dELTVLENLY-IGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD---LDEKVANLSISHKQMLEIAKTLMLDAKVII 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 180 ADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:PRK09700 169 MDEPTSSLTNKEVDYLFLIMNQLRKEGT-AIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
23-250 |
1.32e-13 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 69.86 E-value: 1.32e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 23 ATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkiSKLSNG-----EVIFDGKRIDTLNEKQLLDIRgndiAMI 97
Cdd:PRK13547 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTG--GGAPRGarvtgDVTLNGEPLAAIDAPRLARLR----AVL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 98 FQepmtALNPVFTIK-NQLVESIKSHKKISKKEANNLAKDLL-KKVGIARQDEILNSYPHQLSGGMRQRVMIAMAIS--- 172
Cdd:PRK13547 89 PQ----AAQPAFAFSaREIVLLGRYPHARRAGALTHRDGEIAwQALALAGATALVGRDVTTLSGGELARVQFARVLAqlw 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 173 ------CSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEILh 246
Cdd:PRK13547 165 pphdaaQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL- 243
|
....
gi 777211855 247 NPKH 250
Cdd:PRK13547 244 TPAH 247
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
27-239 |
2.49e-13 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 67.67 E-value: 2.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISklSNGEVIFDGKRIDTLNEK---QLLDIRGNDIAMifqepmt 103
Cdd:cd03233 25 DFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVS--VEGDIHYNGIPYKEFAEKypgEIIYVSEEDVHF------- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 alnPVFTIKnqlvesikshkkiskkeannlakDLLKKVGIARQDEILNSyphqLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:cd03233 96 ---PTLTVR-----------------------ETLDFALRCKGNEFVRG----ISGGERKRVSIAEALVSRASVLCWDNS 145
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 184 TTALDVTIQAQILDLLKELQKETQMAIMMITHDLS--VVAEFcDKVLVMYAGQIVEFG 239
Cdd:cd03233 146 TRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASdeIYDLF-DKVLVLYEGRQIYYG 202
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
25-249 |
4.13e-13 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 67.75 E-value: 4.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTL--NEKQLLDI----------RG- 91
Cdd:COG1137 19 VKDVSLEVNQGEIVGLLGPNGAGKTTTFYMIVGLV-----KPDSGRIFLDGEDITHLpmHKRARLGIgylpqeasifRKl 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 92 ----NdIAMIFQepMTALNPvftiknqlvesikshkkiskKEANNLAKDLLKKVGIARqdeILNSYPHQLSGGMRQRVMI 167
Cdd:COG1137 94 tvedN-ILAVLE--LRKLSK--------------------KEREERLEELLEEFGITH---LRKSKAYSLSGGERRRVEI 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 168 AMAISCSPKLLIADEPTTALD---VT-IQAQILDLlkelqKETQMAImMIT-HD----LSVvaefCDKVLVMYAGQIVEF 238
Cdd:COG1137 148 ARALATNPKFILLDEPFAGVDpiaVAdIQKIIRHL-----KERGIGV-LITdHNvretLGI----CDRAYIISEGKVLAE 217
|
250
....*....|.
gi 777211855 239 GGIKEILHNPK 249
Cdd:COG1137 218 GTPEEILNNPL 228
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
35-234 |
5.16e-13 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 69.26 E-value: 5.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 35 GEVLGIVGESGCGKSILSKSIIKllpekISKLSNGEVIFDGKRIDTLNEKqllDIRGNDIAMIFQEpmtaLN--PVFTIK 112
Cdd:PRK10762 30 GRVMALVGENGAGKSTMMKVLTG-----IYTRDAGSILYLGKEVTFNGPK---SSQEAGIGIIHQE----LNliPQLTIA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 113 NQLV---ESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSyphQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDV 189
Cdd:PRK10762 98 ENIFlgrEFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG---ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 777211855 190 TIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQ 234
Cdd:PRK10762 175 TETESLFRVIREL-KSQGRGIVYISHRLKEIFEICDDVTVFRDGQ 218
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
25-215 |
5.68e-13 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 66.02 E-value: 5.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDgkridtlnekqlldiRGNDIAMIFQEP-Mt 103
Cdd:cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP-----WGSGRIGMP---------------EGEDLLFLPQRPyL- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 alnPVFTIKNQLVesikshkkiskkeannlakdllkkvgiarqdeilnsYP--HQLSGGMRQRVMIAMAISCSPKLLIAD 181
Cdd:cd03223 76 ---PLGTLREQLI------------------------------------YPwdDVLSGGEQQRLAFARLLLHKPKFVFLD 116
|
170 180 190
....*....|....*....|....*....|....
gi 777211855 182 EPTTALDVTIQAQILDLLKELqketQMAIMMITH 215
Cdd:cd03223 117 EATSALDEESEDRLYQLLKEL----GITVISVGH 146
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
33-239 |
2.51e-12 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 67.60 E-value: 2.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 33 SKGEVLGIVGESGCGKSILSKSIIKLLPekiSKLSNGEVIFDGKRIdtlnEKQLLDIRGndiaMIFQEPMtaLNPVFTIK 112
Cdd:PLN03211 92 SPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKP----TKQILKRTG----FVTQDDI--LYPHLTVR 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 113 NQLV--ESIKSHKKISKKEANNLAKDLLKKVGIARQDE--ILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALD 188
Cdd:PLN03211 159 ETLVfcSLLRLPKSLTKQEKILVAESVISELGLTKCENtiIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 777211855 189 VTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFG 239
Cdd:PLN03211 239 ATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFG 289
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
25-230 |
3.00e-12 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 67.14 E-value: 3.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDgkridtlnekqlldiRGNDIAMIFQEPMTa 104
Cdd:COG4178 379 LEDLSLSLKPGERLLITGPSGSGKSTLLRAIAGLWPY-----GSGRIARP---------------AGARVLFLPQRPYL- 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lnPVFTIKNQLV--ESIKSHKKISKKEAnnlakdlLKKVG----IARQDEILNsYPHQLSGGMRQRVMIAMAISCSPKLL 178
Cdd:COG4178 438 --PLGTLREALLypATAEAFSDAELREA-------LEAVGlghlAERLDEEAD-WDQVLSLGEQQRLAFARLLLHKPDWL 507
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDlSVVAEFCDKVLVM 230
Cdd:COG4178 508 FLDEATSALDEENEAALYQLLREELPGT--TVISVGHR-STLAAFHDRVLEL 556
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
3-240 |
3.33e-12 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 67.01 E-value: 3.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 3 NVLLEVKDLetSLKINNEWLatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFdGKRI---- 78
Cdd:COG0488 313 KKVLELEGL--SKSYGDKTL--LDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAGEL-----EPDSGTVKL-GETVkigy 382
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 79 -----DTLNEKQ-LLDIrgndiamifqepMTALNPvftiknqlvesikshkKISKKEANNLAKDLL-------KKVGiar 145
Cdd:COG0488 383 fdqhqEELDPDKtVLDE------------LRDGAP----------------GGTEQEVRGYLGRFLfsgddafKPVG--- 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 146 qdeilnsyphQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDV-TIQAqILDLLKELQKetqmAIMMITHDLSVVAEFC 224
Cdd:COG0488 432 ----------VLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIeTLEA-LEEALDDFPG----TVLLVSHDRYFLDRVA 496
|
250
....*....|....*.
gi 777211855 225 DKVLVMYAGQIVEFGG 240
Cdd:COG0488 497 TRILEFEDGGVREYPG 512
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
4-236 |
5.36e-12 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 66.47 E-value: 5.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 4 VLLEVKDLE-TSLKinnewlatvENISFELSKGEVLGIVGESGCGKSILSKSIIKLlpekiSKLSNGEVIFDGKRIDTLN 82
Cdd:PRK11288 256 VRLRLDGLKgPGLR---------EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGA-----TRRTAGQVYLDGKPIDIRS 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 83 EKQLldIRgndiAMIF-------QEPMTALNPV----------------FTIKNQlvesikshkkiskKEANNlAKDLLK 139
Cdd:PRK11288 322 PRDA--IR----AGIMlcpedrkAEGIIPVHSVadninisarrhhlragCLINNR-------------WEAEN-ADRFIR 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 140 KVGI----ARQDeILNsyphqLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITH 215
Cdd:PRK11288 382 SLNIktpsREQL-IMN-----LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL-AAQGVAVLFVSS 454
|
250 260
....*....|....*....|.
gi 777211855 216 DLSVVAEFCDKVLVMYAGQIV 236
Cdd:PRK11288 455 DLPEVLGVADRIVVMREGRIA 475
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
6-215 |
9.12e-12 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 63.15 E-value: 9.12e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSlkinNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNekq 85
Cdd:TIGR01189 1 LAARNLACS----RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR-----PDSGEVRWNGTPLAEQR--- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 llDIRGNDIAMIFQEPmtALNPVFTIKNQLvesikSHKKISKKEANNLAKDLLKKVGIARQDEILnsyPHQLSGGMRQRV 165
Cdd:TIGR01189 69 --DEPHENILYLGHLP--GLKPELSALENL-----HFWAAIHGGAQRTIEDALAAVGLTGFEDLP---AAQLSAGQQRRL 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 777211855 166 MIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKElQKETQMAIMMITH 215
Cdd:TIGR01189 137 ALARLWLSRRPLWILDEPTTALDKAGVALLAGLLRA-HLARGGIVLLTTH 185
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
14-245 |
1.48e-11 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 65.12 E-value: 1.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 14 SLKINNEWLA------TVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEKQLL 87
Cdd:PRK10790 340 RIDIDNVSFAyrddnlVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP-----LTEGEIRLDGRPLSSLSHSVLR 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 88 dirgNDIAMIFQEPMTALNPVF---TIKNQLVESIKSHKKiskkEANNLAkDLLKKV--GI-ARQDEILNSyphqLSGGM 161
Cdd:PRK10790 415 ----QGVAMVQQDPVVLADTFLanvTLGRDISEEQVWQAL----ETVQLA-ELARSLpdGLyTPLGEQGNN----LSVGQ 481
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 162 RQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAImmITHDLSVVAEfCDKVLVMYAGQIVEFGGI 241
Cdd:PRK10790 482 KQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVV--IAHRLSTIVE-ADTILVLHRGQAVEQGTH 558
|
....
gi 777211855 242 KEIL 245
Cdd:PRK10790 559 QQLL 562
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
28-240 |
4.85e-11 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 62.34 E-value: 4.85e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 28 ISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGEVIfdGKRIDtlNEKQLL-DIRGN--DIAMIFQEpMTA 104
Cdd:PRK09984 23 VDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELL--GRTVQ--REGRLArDIRKSraNTGYIFQQ-FNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKNQLVESIKSH------KKISKKEANNLAKDLLKKVGIARqdeilnsYPHQ----LSGGMRQRVMIAMAISCS 174
Cdd:PRK09984 98 VNRLSVLENVLIGALGSTpfwrtcFSWFTREQKQRALQALTRVGMVH-------FAHQrvstLSGGQQQRVAIARALMQQ 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 175 PKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG 240
Cdd:PRK09984 171 AKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
3-235 |
7.37e-11 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 62.82 E-value: 7.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 3 NVLLEVKDLeTSLKinnewLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKllpekISKLSNGEVIFDGKridTLN 82
Cdd:PRK10982 248 EVILEVRNL-TSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFG-----IREKSAGTITLHGK---KIN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 83 EKQLLDIRGNDIAMIFQEP-MTALNPVFTIK-NQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEILNSYPH--QLS 158
Cdd:PRK10982 314 NHNANEAINHGFALVTEERrSTGIYAYLDIGfNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQigSLS 393
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 159 GGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:PRK10982 394 GGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDK-GIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
8-268 |
8.58e-11 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 61.37 E-value: 8.58e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 8 VKDLETSLKINNEWLAtVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLS-NGEVifdgkridtlnekql 86
Cdd:PRK13546 24 MKDALIPKHKNKTFFA-LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDrNGEV--------------- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 87 ldirgNDIAMifqepMTALNPVFT-IKNqlVESIKSHKKISKKEANNLAKDLLKkvgIARQDEILNSYPHQLSGGMRQRV 165
Cdd:PRK13546 88 -----SVIAI-----SAGLSGQLTgIEN--IEFKMLCMGFKRKEIKAMTPKIIE---FSELGEFIYQPVKKYSSGMRAKL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 166 MIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEIL 245
Cdd:PRK13546 153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEF-KEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231
|
250 260
....*....|....*....|...
gi 777211855 246 hnPKhpYTQKLLSTIPKLKEEQK 268
Cdd:PRK13546 232 --PK--YEAFLNDFKKKSKAEQK 250
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
26-220 |
1.08e-10 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 62.74 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSilskSIIKLLpEKISKLSNGEVIFDgkriDTLNEKQL-LDIRGNDIAMIFQEPMTA 104
Cdd:PTZ00265 402 KDLNFTLTEGKTYAFVGESGCGKS----TILKLI-ERLYDPTEGDIIIN----DSHNLKDInLKWWRSKIGVVSQDPLLF 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPV--------FTIK-------------------------------------------NQLVESIKSHKKISKKEANNL 133
Cdd:PTZ00265 473 SNSIknnikyslYSLKdlealsnyynedgndsqenknkrnscrakcagdlndmsnttdsNELIEMRKNYQTIKDSEVVDV 552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 134 AKDLLKKVGIA----RQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMA 209
Cdd:PTZ00265 553 SKKVLIHDFVSalpdKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRI 632
|
250
....*....|.
gi 777211855 210 IMMITHDLSVV 220
Cdd:PTZ00265 633 TIIIAHRLSTI 643
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
25-248 |
1.37e-10 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 62.04 E-value: 1.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLnekQLLDIRGNdIAMIFQEPMta 104
Cdd:PRK10789 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-----DVSEGDIRFHDIPLTKL---QLDSWRSR-LAVVSQTPF-- 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 lnpVF--TIKNQLVESIKSHKKISKKEANNLAkdllkkvgiARQDEILN---SYPHQ-------LSGGMRQRVMIAMAIS 172
Cdd:PRK10789 400 ---LFsdTVANNIALGRPDATQQEIEHVARLA---------SVHDDILRlpqGYDTEvgergvmLSGGQKQRISIARALL 467
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 173 CSPKLLIADEPTTALDVTIQAQILDLLKELQKetQMAIMMITHDLSVVAEfCDKVLVMYAGQIVEFGGIKEILHNP 248
Cdd:PRK10789 468 LNAEILILDDALSAVDGRTEHQILHNLRQWGE--GRTVIISAHRLSALTE-ASEILVMQHGHIAQRGNHDQLAQQS 540
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
31-239 |
1.68e-10 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 60.50 E-value: 1.68e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 31 ELSKGEVLGIVGESGCGKSilskSIIKLLPEKIsKLSNGEVIFDGkriDTLNEK-QLLDIrgnDIAMIFQEPMTALNPVF 109
Cdd:cd03237 21 SISESEVIGILGPNGIGKT----TFIKMLAGVL-KPDEGDIEIEL---DTVSYKpQYIKA---DYEGTVRDLLSSITKDF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 110 TIKNQLvesikshkkiskkeannlAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDV 189
Cdd:cd03237 90 YTHPYF------------------KTEIAKPLQI---EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 777211855 190 TIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVmYAGQIVEFG 239
Cdd:cd03237 149 EQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV-FEGEPSVNG 197
|
|
| ABCC_MRP_domain1 |
cd03250 |
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This ... |
24-234 |
3.76e-10 |
|
ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C; This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213217 [Multi-domain] Cd Length: 204 Bit Score: 58.63 E-value: 3.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 24 TVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKridtlnekqlldirgndIAMIFQEP-- 101
Cdd:cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-----KLSGSVSVPGS-----------------IAYVSQEPwi 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 MTAlnpvfTIKNQLV--ESIKSHKKISKKEANNLAKDLlkkvgiarqdEILnsyPHQ-----------LSGGMRQRVMIA 168
Cdd:cd03250 78 QNG-----TIRENILfgKPFDEERYEKVIKACALEPDL----------EIL---PDGdlteigekginLSGGQKQRISLA 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 169 MAISCSPKLLIADEPTTALDVTIQAQILD--LLKELQKETqmAIMMITHDLSVVAEfCDKVLVMYAGQ 234
Cdd:cd03250 140 RAVYSDADIYLLDDPLSAVDAHVGRHIFEncILGLLLNNK--TRILVTHQLQLLPH-ADQIVVLDNGR 204
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
29-245 |
3.77e-10 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 60.80 E-value: 3.77e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 29 SFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDTLNEKQLLDI------RGNDIAMIFQEPM 102
Cdd:PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGELP-----LLSGERQSQFSHITRLSFEQLQKLvsdewqRNNTDMLSPGEDD 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 TALNPVFTIKNQLvesikshkkiskkEANNLAKDLLKKVGIARqdeILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADE 182
Cdd:PRK10938 98 TGRTTAEIIQDEV-------------KDPARCEQLAQQFGITA---LLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 777211855 183 PTTALDVTIQAQILDLLKELQKEtQMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEIL 245
Cdd:PRK10938 162 PFDGLDVASRQQLAELLASLHQS-GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
6-220 |
3.83e-10 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 58.66 E-value: 3.83e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLETSlkinNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDtlnekQ 85
Cdd:cd03231 1 LEADELTCE----RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-----LAGRVLLNGGPLD-----F 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRGNDIAMIFQEPmtALNPVFTIKNQLVESIKSHKKISKKEAnnlakdlLKKVGIARQDEILnsyPHQLSGGMRQRV 165
Cdd:cd03231 67 QRDSIARGLLYLGHAP--GIKTTLSVLENLRFWHADHSDEQVEEA-------LARVGLNGFEDRP---VAQLSAGQQRRV 134
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 166 MIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVV 220
Cdd:cd03231 135 ALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLS 189
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
26-231 |
4.51e-10 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 60.57 E-value: 4.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENiSFEL------SKGEVLGIVGESGCGKS----ILSKSIIKLLPEKISKLSNGEVI--FDGKRIDTLNEKqlldIRGND 93
Cdd:COG1245 85 EN-GFRLyglpvpKKGKVTGILGPNGIGKStalkILSGELKPNLGDYDEEPSWDEVLkrFRGTELQDYFKK----LANGE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 94 IAMIfqepmtalnpvftIKNQLVESIKSHKKISkkeannlAKDLLKKV---GIARQ-------DEILNSYPHQLSGGMRQ 163
Cdd:COG1245 160 IKVA-------------HKPQYVDLIPKVFKGT-------VRELLEKVderGKLDElaeklglENILDRDISELSGGELQ 219
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMY 231
Cdd:COG1245 220 RVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIRELAEEGK-YVLVVEHDLAILDYLADYVHILY 286
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
27-237 |
5.30e-10 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 58.43 E-value: 5.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKlsnGEVIFDGKRIDtlNEKQLLDirgndiamifqepmtALN 106
Cdd:COG2401 48 DLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKGTPVA---GCVDVPDNQFG--REASLID---------------AIG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 107 PVFTIKnqlvesikshkkiskkeannLAKDLLKKVGIARQDEILNSYPHqLSGGMRQRVMIAMAISCSPKLLIADEPTTA 186
Cdd:COG2401 108 RKGDFK--------------------DAVELLNAVGLSDAVLWLRRFKE-LSTGQKFRFRLALLLAERPKLLVIDEFCSH 166
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 777211855 187 LDVTiQAQILDL-LKELQKETQMAIMMITHDLSVVAEFCDKVLVM--YAGQIVE 237
Cdd:COG2401 167 LDRQ-TAKRVARnLQKLARRAGITLVVATHHYDVIDDLQPDLLIFvgYGGVPEE 219
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
32-231 |
1.07e-09 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 59.44 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 32 LSKGEVLGIVGESGCGKS----ILSKSIIKLLPEKISKLSNGEVI--FDGKRIDTLNEKqlldIRGNDIAMIfqepmtal 105
Cdd:PRK13409 96 PKEGKVTGILGPNGIGKTtavkILSGELIPNLGDYEEEPSWDEVLkrFRGTELQNYFKK----LYNGEIKVV-------- 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 106 npvftIKNQLVESIKSHKKISkkeannlAKDLLKKV---GIARQ-------DEILNSYPHQLSGGMRQRVMIAMAISCSP 175
Cdd:PRK13409 164 -----HKPQYVDLIPKVFKGK-------VRELLKKVderGKLDEvverlglENILDRDISELSGGELQRVAIAAALLRDA 231
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 176 KLLIADEPTTALDVTIQAQILDLLKELQKETqmAIMMITHDLSVVAEFCDKVLVMY 231
Cdd:PRK13409 232 DFYFFDEPTSYLDIRQRLNVARLIRELAEGK--YVLVVEHDLAVLDYLADNVHIAY 285
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
24-265 |
1.15e-09 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 59.75 E-value: 1.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 24 TVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekisKLSNGEVIfdgkridtlnekqlldIRGNdIAMIFQepmt 103
Cdd:PLN03130 632 TLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP----PRSDASVV----------------IRGT-VAYVPQ---- 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 alnpVFTIKNQLVESIKSHKKISKKEANNLAKDLlkkVGIARQDEILNSYPH--------QLSGGMRQRVMIAMAISCSP 175
Cdd:PLN03130 687 ----VSWIFNATVRDNILFGSPFDPERYERAIDV---TALQHDLDLLPGGDLteigergvNISGGQKQRVSMARAVYSNS 759
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 176 KLLIADEPTTALDVTIQAQILD--LLKELQKETQMAIMMITHDLSVVaefcDKVLVMYAGQIVEFGGIKEILHNpkHPYT 253
Cdd:PLN03130 760 DVYIFDDPLSALDAHVGRQVFDkcIKDELRGKTRVLVTNQLHFLSQV----DRIILVHEGMIKEEGTYEELSNN--GPLF 833
|
250
....*....|..
gi 777211855 254 QKLLSTIPKLKE 265
Cdd:PLN03130 834 QKLMENAGKMEE 845
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
27-237 |
1.65e-09 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 58.77 E-value: 1.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKSILsksiIKLL-----PekisklSNGEVIFDGKRIDTLNEKQLLDirgNDIAMIFQEp 101
Cdd:PRK11288 22 DISFDCRAGQVHALMGENGAGKSTL----LKILsgnyqP------DAGSILIDGQEMRFASTTAALA---AGVAIIYQE- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 mTALNPVFTIKNQLV--ESIKSHKKISKKEANNLAKDLLKKVGIarqdEILNSYP-HQLSGGMRQRVMIAMAISCSPKLL 178
Cdd:PRK11288 88 -LHLVPEMTVAENLYlgQLPHKGGIVNRRLLNYEAREQLEHLGV----DIDPDTPlKYLSIGQRQMVEIAKALARNARVI 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMYAGQIVE 237
Cdd:PRK11288 163 AFDEPTSSLSAREIEQLFRVIRELRAEGR-VILYVSHRMEEIFALCDAITVFKDGRYVA 220
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
22-233 |
2.24e-09 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 56.57 E-value: 2.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 22 LATVENISFELSKGEVLGIVGESGCGKSILsksIIKLLPEkISKLSnGEVIFDGKRIDTLNEKQLLDIRGNDIAMIFQEP 101
Cdd:cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSL---LLAILGE-MQTLE-GKVHWSNKNESEPSFEATRSRNRYSVAYAAQKP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 MTaLNPVFTIKNQLVESIKSHKKISKKEANNLAKDLlKKVGIARQDEIlNSYPHQLSGGMRQRVMIAMAISCSPKLLIAD 181
Cdd:cd03290 89 WL-LNATVEENITFGSPFNKQRYKAVTDACSLQPDI-DLLPFGDQTEI-GERGINLSGGQRQRICVARALYQNTNIVFLD 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 182 EPTTALDV-----TIQAQILDLLKElQKETqmaIMMITHDLSVVAEfCDKVLVMYAG 233
Cdd:cd03290 166 DPFSALDIhlsdhLMQEGILKFLQD-DKRT---LVLVTHKLQYLPH-ADWIIAMKDG 217
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
25-245 |
4.07e-09 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 58.03 E-value: 4.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKllpekISKLSNGEVIFDGKRIDTLNekqLLDIRgNDIAMIFQEPM-- 102
Cdd:TIGR00957 1302 LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFR-----INESAEGEIIIDGLNIAKIG---LHDLR-FKITIIPQDPVlf 1372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 -----TALNPVFTIKNQlvesikshkkiskkeannlakDLLKKVGIARQDEILNSYP----HQ-------LSGGMRQRVM 166
Cdd:TIGR00957 1373 sgslrMNLDPFSQYSDE---------------------EVWWALELAHLKTFVSALPdkldHEcaeggenLSVGQRQLVC 1431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 167 IAMAISCSPKLLIADEPTTALDVT----IQAQIldllkELQKETqMAIMMITHDLSVVAEFCdKVLVMYAGQIVEFGGIK 242
Cdd:TIGR00957 1432 LARALLRKTKILVLDEATAAVDLEtdnlIQSTI-----RTQFED-CTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPS 1504
|
...
gi 777211855 243 EIL 245
Cdd:TIGR00957 1505 NLL 1507
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
25-245 |
5.19e-09 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 56.35 E-value: 5.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKL-LPEKISKLSNGEVIFDGKRIDTLNekqlldirgndIAMIFQepMT 103
Cdd:PRK13537 23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLtHPDAGSISLCGEPVPSRARHARQR-----------VGVVPQ--FD 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALNPVFTIKNQLVeSIKSHKKISKKEANNLAKDLLKkvgIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:PRK13537 90 NLDPDFTVRENLL-VFGRYFGLSAAAARALVPPLLE---FAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEP 165
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 777211855 184 TTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEIL 245
Cdd:PRK13537 166 TTGLDPQARHLMWERLRSLLARGK-TILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-241 |
5.70e-09 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 55.80 E-value: 5.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSLKiNNEWLatvENISFELSKGEVLGIVGESGCGKSILSKsIIKLLPEkiSKLSNGEVIFDGKRIDT 80
Cdd:CHL00131 3 KNKPILEIKNLHASVN-ENEIL---KGLNLSINKGEIHAIMGPNGSGKSTLSK-VIAGHPA--YKILEGDILFKGESILD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 81 LNEkqllDIRGN-DIAMIFQEP------------MTALNPVfTIKNQLVEsikshkkISKKEANNLAKDLLKKVGIarQD 147
Cdd:CHL00131 76 LEP----EERAHlGIFLAFQYPieipgvsnadflRLAYNSK-RKFQGLPE-------LDPLEFLEIINEKLKLVGM--DP 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 148 EILNSYPHQ-LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHD---LSVVAEf 223
Cdd:CHL00131 142 SFLSRNVNEgFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKL-MTSENSIILITHYqrlLDYIKP- 219
|
250
....*....|....*...
gi 777211855 224 cDKVLVMYAGQIVEFGGI 241
Cdd:CHL00131 220 -DYVHVMQNGKIIKTGDA 236
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
3-236 |
7.42e-09 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 56.72 E-value: 7.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 3 NVLLEVKDLETSLKINNEWLAtVENISFELSKGEVLGIVGESGCGKSILSKSII-KLLPEKISklsnGEVIFDGKRIDTL 81
Cdd:NF040905 255 EVVFEVKNWTVYHPLHPERKV-VDDVSLNVRRGEIVGIAGLMGAGRTELAMSVFgRSYGRNIS----GTVFKDGKEVDVS 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 82 NEKQLLDirgNDIAMIFQEPMTA-LNPVFTIKNQLVesikshkkiskkeANNLAKdlLKKVGIARQDE---ILNSYPH-- 155
Cdd:NF040905 330 TVSDAID---AGLAYVTEDRKGYgLNLIDDIKRNIT-------------LANLGK--VSRRGVIDENEeikVAEEYRKkm 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 156 ------------QLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqMAIMMITHDLSVVAEF 223
Cdd:NF040905 392 niktpsvfqkvgNLSGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELAAEG-KGVIVISSELPELLGM 470
|
250
....*....|...
gi 777211855 224 CDKVLVMYAGQIV 236
Cdd:NF040905 471 CDRIYVMNEGRIT 483
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
35-231 |
8.53e-09 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 55.45 E-value: 8.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 35 GEVLGIVGESGCGKS----ILSKSIIKLLPEKISKLSNGEVI--FDGKRIdtlnEKQLLDIRGNDIAMIfQEPMTalnpV 108
Cdd:cd03236 26 GQVLGLVGPNGIGKStalkILAGKLKPNLGKFDDPPDWDEILdeFRGSEL----QNYFTKLLEGDVKVI-VKPQY----V 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 109 FTIKNQlVESIKSHKKISKKEANNLaKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALD 188
Cdd:cd03236 97 DLIPKA-VKGKVGELLKKKDERGKL-DELVDQLEL---RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLD 171
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 777211855 189 VTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMY 231
Cdd:cd03236 172 IKQRLNAARLIRELAEDDN-YVLVVEHDLAVLDYLSDYIHCLY 213
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
26-215 |
9.68e-09 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 54.49 E-value: 9.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGKRIDtlnekqLLDIRGndiAMIFQEPMTAL 105
Cdd:PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-----PAAGTIKLDGGDID------DPDVAE---ACHYLGHRNAM 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 106 NPVFTIknqlvesikshkkiskkeANNLA-------------KDLLKKVGIARQDEILNSYphqLSGGMRQRVMIAmais 172
Cdd:PRK13539 85 KPALTV------------------AENLEfwaaflggeeldiAAALEAVGLAPLAHLPFGY---LSAGQKRRVALA---- 139
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 777211855 173 cspKLLIA-------DEPTTALDVTIQAQILDLLKELQKETQMAIMMiTH 215
Cdd:PRK13539 140 ---RLLVSnrpiwilDEPTAALDAAAVALFAELIRAHLAQGGIVIAA-TH 185
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
25-235 |
1.15e-08 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 56.29 E-value: 1.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEV-IF----DGKRIDT----------------LNE 83
Cdd:NF033858 282 VDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTGLLPA-----SEGEAwLFgqpvDAGDIATrrrvgymsqafslygeLTV 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 84 KQLLDIRgndiAMIFQEPmtalnpvftiknqlvesikshkkisKKEANNLAKDLLKKVGIArqdEILNSYPHQLSGGMRQ 163
Cdd:NF033858 357 RQNLELH----ARLFHLP-------------------------AAEIAARVAEMLERFDLA---DVADALPDSLPLGIRQ 404
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 777211855 164 RVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSvVAEFCDKVLVMYAGQI 235
Cdd:NF033858 405 RLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDGVTIFISTHFMN-EAERCDRISLMHAGRV 475
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
24-245 |
1.36e-08 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 56.49 E-value: 1.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 24 TVENISFELSKGEVLGIVGESGCGKSilskSIIKLLPEKISKLSnGEVIFDGK----------RIDTLNEKQLLDirgnd 93
Cdd:TIGR00957 653 TLNGITFSIPEGALVAVVGQVGCGKS----SLLSALLAEMDKVE-GHVHMKGSvayvpqqawiQNDSLRENILFG----- 722
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 94 iamifqepmTALNPVFtiknqlvesikshkKISKKEANNLAKDLlkkvgiarqdEILNSYPH--------QLSGGMRQRV 165
Cdd:TIGR00957 723 ---------KALNEKY--------------YQQVLEACALLPDL----------EILPSGDRteigekgvNLSGGQKQRV 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 166 MIAMAISCSPKLLIADEPTTALDVTIQAQILDLL----KELQKETQmaiMMITHDLSVVAEfCDKVLVMYAGQIVEFGGI 241
Cdd:TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVigpeGVLKNKTR---ILVTHGISYLPQ-VDVIIVMSGGKISEMGSY 845
|
....
gi 777211855 242 KEIL 245
Cdd:TIGR00957 846 QELL 849
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-236 |
1.40e-08 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 54.50 E-value: 1.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 1 MNNVLLEVKDLETSL-KINnewlaTVENISFELSKGEVLGIVGESGCGKSILSKSiikLLPEkiSKLSNGEVIFDGKrid 79
Cdd:PRK11614 1 MEKVMLSFDKVSAHYgKIQ-----ALHEVSLHINQGEIVTLIGANGAGKTTLLGT---LCGD--PRATSGRIVFDGK--- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 80 tlnekqllDIRGNDIAMIFQEPMtALNP----VF---TIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIARQDEilns 152
Cdd:PRK11614 68 --------DITDWQTAKIMREAV-AIVPegrrVFsrmTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQR---- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 153 yPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETqMAIMMITHDLSVVAEFCDKVLVMYA 232
Cdd:PRK11614 135 -AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG-MTIFLVEQNANQALKLADRGYVLEN 212
|
....
gi 777211855 233 GQIV 236
Cdd:PRK11614 213 GHVV 216
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
31-229 |
1.62e-08 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 55.56 E-value: 1.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 31 ELSKGEVLGIVGESGCGKSilskSIIKLLpekisklsNGEVIFDGKRIDTlnekqllDIRgndIAMIFQEpmtaLNPVFT 110
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKT----TFAKIL--------AGVLKPDEGEVDE-------DLK---ISYKPQY----ISPDYD 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 111 IknqLVESIKSHKKISKKEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVT 190
Cdd:COG1245 416 G---TVEEFLRSANTDDFGSSYYKTEIIKPLGL---EKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 489
|
170 180 190
....*....|....*....|....*....|....*....
gi 777211855 191 IQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLV 229
Cdd:COG1245 490 QRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMV 528
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
158-245 |
1.75e-08 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 55.89 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 158 SGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVA-EFCDKVLVMYAGQIV 236
Cdd:TIGR00956 211 SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAyELFDKVIVLYEGYQI 290
|
....*....
gi 777211855 237 EFGGIKEIL 245
Cdd:TIGR00956 291 YFGPADKAK 299
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
67-229 |
2.17e-08 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 55.81 E-value: 2.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 67 SNGEVIFDGKRIDTLNekqLLDIRgNDIAMIFQEPMTALNPVF-TIKnqlvesikshkkisKKEANNLAKDLLKKVGIAR 145
Cdd:PTZ00265 1275 NSGKILLDGVDICDYN---LKDLR-NLFSIVSQEPMLFNMSIYeNIK--------------FGKEDATREDVKRACKFAA 1336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 146 QDEILNSYPHQ-----------LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMIT 214
Cdd:PTZ00265 1337 IDEFIESLPNKydtnvgpygksLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416
|
170
....*....|....*
gi 777211855 215 HDLSVVAEfCDKVLV 229
Cdd:PTZ00265 1417 HRIASIKR-SDKIVV 1430
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
28-244 |
2.65e-08 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 55.06 E-value: 2.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 28 ISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLN---EKQLldirgnDIAMIFQEPMta 104
Cdd:PRK15439 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-----DSGTLEIGGNPCARLTpakAHQL------GIYLVPQEPL-- 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPvftikNQLVESIKSHKKISKKEANNLAKDLLKKVGIArqdeiLNsyPHQLSGGM----RQRVMIAMAISCSPKLLIA 180
Cdd:PRK15439 97 LFP-----NLSVKENILFGLPKRQASMQKMKQLLAALGCQ-----LD--LDSSAGSLevadRQIVEILRGLMRDSRILIL 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 181 DEPTTALDVTIQAQILDLLKELQKETqMAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:PRK15439 165 DEPTASLTPAETERLFSRIRELLAQG-VGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
24-276 |
4.13e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 54.98 E-value: 4.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 24 TVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKisklsngevifdgkridtlnEKQLLDIRGNdIAMIFQEPMt 103
Cdd:PLN03232 632 TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA--------------------ETSSVVIRGS-VAYVPQVSW- 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 alnpVF--TIKNQLV--ESIKSHKKISKKEANNLAKDLLKKVGIARQDeiLNSYPHQLSGGMRQRVMIAMAISCSPKLLI 179
Cdd:PLN03232 690 ----IFnaTVRENILfgSDFESERYWRAIDVTALQHDLDLLPGRDLTE--IGERGVNISGGQKQRVSMARAVYSNSDIYI 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 180 ADEPTTALDVTIQAQILD--LLKELQKETQMAIMMITHDLSVVaefcDKVLVMYAGQIVEFGGIKEILHNPKhpYTQKLL 257
Cdd:PLN03232 764 FDDPLSALDAHVAHQVFDscMKDELKGKTRVLVTNQLHFLPLM----DRIILVSEGMIKEEGTFAELSKSGS--LFKKLM 837
|
250
....*....|....*....
gi 777211855 258 STIPKLKEEQKRLETIEGI 276
Cdd:PLN03232 838 ENAGKMDATQEVNTNDENI 856
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
15-240 |
4.51e-08 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 54.57 E-value: 4.51e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 15 LKINNEWLA-----TVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekiskLSNGEVIFDGK-RIDTLNEKQLLD 88
Cdd:PRK11147 4 ISIHGAWLSfsdapLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL-----LDDGRIIYEQDlIVARLQQDPPRN 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 89 IRGN--------------------DIA-MIFQEPM-TALNPVFTIKNQLvesikshkkiskkEANNL------AKDLLKK 140
Cdd:PRK11147 79 VEGTvydfvaegieeqaeylkryhDIShLVETDPSeKNLNELAKLQEQL-------------DHHNLwqlenrINEVLAQ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 141 VGIArQDEILNSyphqLSGGMRQRVMIAMAISCSPKLLIADEPTTALDV-TIqaqilDLLKELQKETQMAIMMITHDLSV 219
Cdd:PRK11147 146 LGLD-PDAALSS----LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIeTI-----EWLEGFLKTFQGSIIFISHDRSF 215
|
250 260
....*....|....*....|.
gi 777211855 220 VAEFCDKVLVMYAGQIVEFGG 240
Cdd:PRK11147 216 IRNMATRIVDLDRGKLVSYPG 236
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
31-229 |
5.56e-08 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 54.04 E-value: 5.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 31 ELSKGEVLGIVGESGCGKSilskSIIKLLPEKIsKLSNGEVIFDGK--------RIDTlnekqlldirgndiamifqePM 102
Cdd:PRK13409 361 EIYEGEVIGIVGPNGIGKT----TFAKLLAGVL-KPDEGEVDPELKisykpqyiKPDY--------------------DG 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 103 TALNPVFTIKNQLvesikshkkiskkEANNLAKDLLKKVGIarqDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADE 182
Cdd:PRK13409 416 TVEDLLRSITDDL-------------GSSYYKSEIIKPLQL---ERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDE 479
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 777211855 183 PTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLV 229
Cdd:PRK13409 480 PSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMV 526
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
5-240 |
5.79e-08 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 52.87 E-value: 5.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 5 LLEVKDLETSLKINnewlATVENISFELSKGEVLGIVGESGCGKSILSKSiikLLPEKISKLSNGEVIFDGKRIDTLNEK 84
Cdd:PRK09580 1 MLSIKDLHVSVEDK----AILRGLNLEVRPGEVHAIMGPNGSGKSTLSAT---LAGREDYEVTGGTVEFKGKDLLELSPE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 85 qllDIRGNDIAMIFQEPM------------TALNPVFTIKNQ--LVESIKSHKKISKKEANNLAKDLLKKvgiarqdeil 150
Cdd:PRK09580 74 ---DRAGEGIFMAFQYPVeipgvsnqfflqTALNAVRSYRGQepLDRFDFQDLMEEKIALLKMPEDLLTR---------- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 151 nSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEF-CDKVLV 229
Cdd:PRK09580 141 -SVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKR-SFIIVTHYQRILDYIkPDYVHV 218
|
250
....*....|.
gi 777211855 230 MYAGQIVEFGG 240
Cdd:PRK09580 219 LYQGRIVKSGD 229
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
6-250 |
5.80e-08 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 53.32 E-value: 5.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLetSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKisklsnGEVIFDGKRIDTLNEKQ 85
Cdd:cd03289 3 MTVKDL--TAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE------GDIQIDGVSWNSVPLQK 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRGndiaMIFQEpmtalnpVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGI----ARQDEILNSYPHQLSGGM 161
Cdd:cd03289 75 WRKAFG----VIPQK-------VFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIeqfpGQLDFVLVDGGCVLSHGH 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 162 RQRVMIAMAISCSPKLLIADEPTTALD-VTIQAqILDLLKelQKETQMAIMMITHDLSVVAEfCDKVLVMYAGQIVEFGG 240
Cdd:cd03289 144 KQLMCLARSVLSKAKILLLDEPSAHLDpITYQV-IRKTLK--QAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDS 219
|
250
....*....|
gi 777211855 241 IKEILHNPKH 250
Cdd:cd03289 220 IQKLLNEKSH 229
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
25-236 |
1.45e-07 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 52.81 E-value: 1.45e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKllpekISKLSNGEVIFDGKRIDTLNEKQLLDirgNDIAMIFQEpmta 104
Cdd:PRK10982 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFG-----IYQKDSGSILFQGKEIDFKSSKEALE---NGISMVHQE---- 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPV-------------FTIKNQLVESIKSHKkiskkEANNLAKDLlkKVGIARQDEILNsyphqLSGGMRQRVMIAMAI 171
Cdd:PRK10982 82 LNLVlqrsvmdnmwlgrYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVAT-----LSVSQMQMIEIAKAF 149
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 172 SCSPKLLIADEPTTALDVTIQAQILDLLKELqKETQMAIMMITHDLSVVAEFCDKVLVMYAGQIV 236
Cdd:PRK10982 150 SYNAKIVIMDEPTSSLTEKEVNHLFTIIRKL-KERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
27-235 |
1.52e-07 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 53.09 E-value: 1.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFelSKGEVLGIVGESGCGKSILSKSIIKLLPEkisklSNGEVIFDGKRIDTLnekqlLDIRGNDIAMIFQEpmtalN 106
Cdd:TIGR01257 950 NITF--YENQITAFLGHNGAGKTTTLSILTGLLPP-----TSGTVLVGGKDIETN-----LDAVRQSLGMCPQH-----N 1012
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 107 PVF---TIKNQLVeSIKSHKKISKKEANNLAKDLLKKVGIARQDeilNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:TIGR01257 1013 ILFhhlTVAEHIL-FYAQLKGRSWEEAQLEMEAMLEDTGLHHKR---NEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEP 1088
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 777211855 184 TTALDVTIQAQILDLLkeLQKETQMAIMMITHDLSVVAEFCDKVLVMYAGQI 235
Cdd:TIGR01257 1089 TSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
34-222 |
1.59e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 50.06 E-value: 1.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 34 KGEVLGIVGESGCGKSILSKSIIKLLPEKisklSNGEVIFDGKRIDTLNEKQLLDIrgndiamifqepmtalnpvftikn 113
Cdd:smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPP----GGGVIYIDGEDILEEVLDQLLLI------------------------ 52
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 114 qlvesikshkkiskkeannlakdllkkvgiarqdeILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQA 193
Cdd:smart00382 53 -----------------------------------IVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA 97
|
170 180 190
....*....|....*....|....*....|....
gi 777211855 194 QILDL-----LKELQKETQMAIMMITHDLSVVAE 222
Cdd:smart00382 98 LLLLLeelrlLLLLKSEKNLTVILTTNDEKDLGP 131
|
|
| PRK13538 |
PRK13538 |
cytochrome c biogenesis heme-transporting ATPase CcmA; |
26-222 |
2.91e-07 |
|
cytochrome c biogenesis heme-transporting ATPase CcmA;
Pssm-ID: 184125 [Multi-domain] Cd Length: 204 Bit Score: 50.19 E-value: 2.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSilskSIIKLL-----PEkisklsNGEVIFDGKRIDTLNEKqlldirgndiamiFQE 100
Cdd:PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKT----SLLRILaglarPD------AGEVLWQGEPIRRQRDE-------------YHQ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 101 PMTALNPVFTIKNQL--VESIKSHKKISKKEANNLAKDLLKKVGIARQDEILnsyPHQLSGGMRQRVMIAMAISCSPKLL 178
Cdd:PRK13538 75 DLLYLGHQPGIKTELtaLENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP---VRQLSAGQQRRVALARLWLTRAPLW 151
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 777211855 179 IADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAE 222
Cdd:PRK13538 152 ILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASD 195
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
136-244 |
3.59e-07 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 51.27 E-value: 3.59e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 136 DLLKKVGIARQDEILNSYP---------HQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKET 206
Cdd:NF000106 115 DLSRKDARARADELLERFSlteaagraaAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDG 194
|
90 100 110
....*....|....*....|....*....|....*...
gi 777211855 207 QmAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:NF000106 195 A-TVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDEL 231
|
|
| PRK13540 |
PRK13540 |
cytochrome c biogenesis protein CcmA; Provisional |
25-219 |
5.35e-07 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 184127 [Multi-domain] Cd Length: 200 Bit Score: 49.56 E-value: 5.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSIIKLL-PEKisklsnGEVIFDGKRIDTlnekqllDIRGNDIAMIFQEPMT 103
Cdd:PRK13540 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLnPEK------GEILFERQSIKK-------DLCTYQKQLCFVGHRS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALNPVFTIKNQLVesikshkKISKKEANNLAKDLLkkVGIARQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:PRK13540 84 GINPYLTLRENCL-------YDIHFSPGAVGITEL--CRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEP 154
|
170 180 190
....*....|....*....|....*....|....*....
gi 777211855 184 TTALDvtiQAQILDLLKELQKETQM--AIMMITH-DLSV 219
Cdd:PRK13540 155 LVALD---ELSLLTIITKIQEHRAKggAVLLTSHqDLPL 190
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
25-257 |
5.89e-07 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 51.06 E-value: 5.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSII-KLLPekisklSNGEVIFDGKridtlnekqlldirgndiamIFQEPMT 103
Cdd:TIGR01271 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMgELEP------SEGKIKHSGR--------------------ISFSPQT 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALNPVFTIKNQLV--ESIKSHKKISKKEANNLAKDLLKkvgIARQDEI-LNSYPHQLSGGMRQRVMIAMAISCSPKLLIA 180
Cdd:TIGR01271 496 SWIMPGTIKDNIIfgLSYDEYRYTSVIKACQLEEDIAL---FPEKDKTvLGEGGITLSGGQRARISLARAVYKDADLYLL 572
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 181 DEPTTALDVTIQAQILD--LLKELQKETQmaiMMITHDLSVVAEfCDKVLVMYAGQIVEFGGIKEiLHNPKHPYTQKLL 257
Cdd:TIGR01271 573 DSPFTHLDVVTEKEIFEscLCKLMSNKTR---ILVTSKLEHLKK-ADKILLLHEGVCYFYGTFSE-LQAKRPDFSSLLL 646
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
3-216 |
6.74e-07 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 50.70 E-value: 6.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 3 NVLLEVKDLETSLkiNNEWLatVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPEKISKLSNGEVI----FDGKRi 78
Cdd:TIGR03719 320 DKVIEAENLTKAF--GDKLL--IDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIEIGETVklayVDQSR- 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 79 DTLNEKQLL--DIR-GNDIAMI--FQEPMTALNPVFTIKNQlvesikshkkiskkeannlakDLLKKVGiarqdeilnsy 153
Cdd:TIGR03719 395 DALDPNKTVweEISgGLDIIKLgkREIPSRAYVGRFNFKGS---------------------DQQKKVG----------- 442
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 154 phQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDV-TIQAqildlLKELQKETQMAIMMITHD 216
Cdd:TIGR03719 443 --QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVeTLRA-----LEEALLNFAGCAVVISHD 499
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
13-240 |
1.67e-06 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 49.40 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 13 TSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILsksiIKLLPEKISKLSNG----------------------- 69
Cdd:PRK10636 5 SSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTL----LALLKNEISADGGSytfpgnwqlawvnqetpalpqpa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 70 -EVIFDGKRIDTLNEKQLLDIR----GNDIAMIFQEpMTALNpVFTIKNQlvesikshkkiskkeannlAKDLLKKVGIa 144
Cdd:PRK10636 81 lEYVIDGDREYRQLEAQLHDANerndGHAIATIHGK-LDAID-AWTIRSR-------------------AASLLHGLGF- 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 145 rQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDvtIQAQIldLLKELQKETQMAIMMITHDLSVVAEFC 224
Cdd:PRK10636 139 -SNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD--LDAVI--WLEKWLKSYQGTLILISHDRDFLDPIV 213
|
250
....*....|....*.
gi 777211855 225 DKVLVMYAGQIVEFGG 240
Cdd:PRK10636 214 DKIIHIEQQSLFEYTG 229
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
25-244 |
2.06e-06 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 49.63 E-value: 2.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSilskSIIKLLPEKiSKLSNGEVIFDGKRIDTlnekQLLDIRGNdiaMIFQEPMTA 104
Cdd:TIGR01257 1955 VDRLCVGVRPGECFGLLGVNGAGKT----TTFKMLTGD-TTVTSGDATVAGKSILT----NISDVHQN---MGYCPQFDA 2022
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 105 LNPVFTIKNQLVeSIKSHKKISKKEANNLAKDLLKKVGIA-RQDEILNSYphqlSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:TIGR01257 2023 IDDLLTGREHLY-LYARLRGVPAEEIEKVANWSIQSLGLSlYADRLAGTY----SGGNKRKLSTAIALIGCPPLVLLDEP 2097
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 777211855 184 TTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGGIKEI 244
Cdd:TIGR01257 2098 TTGMDPQARRMLWNTIVSIIREGR-AVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
9-243 |
2.09e-06 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 49.34 E-value: 2.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 9 KDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILsksiIKLLPEKISK--LSNGEVIFDGKRIDTLNEKQL 86
Cdd:TIGR00956 763 RNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTL----LNVLAERVTTgvITGGDRLVNGRPLDSSFQRSI 838
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 87 LDIRGNDI---------AMIFQEPMTALNPVfTI--KNQLVESIKSHKkiskkEANNLAKDLLKKVGIArqdeilnsyph 155
Cdd:TIGR00956 839 GYVQQQDLhlptstvreSLRFSAYLRQPKSV-SKseKMEYVEEVIKLL-----EMESYADAVVGVPGEG----------- 901
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 156 qLSGGMRQRVMIAMAISCSPKLLI-ADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVV--AEFcDKVLVMY- 231
Cdd:TIGR00956 902 -LNVEQRKRLTIGVELVAKPKLLLfLDEPTSGLDSQTAWSICKLMRKLADHGQ-AILCTIHQPSAIlfEEF-DRLLLLQk 978
|
250
....*....|..
gi 777211855 232 AGQIVEFGGIKE 243
Cdd:TIGR00956 979 GGQTVYFGDLGE 990
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
6-250 |
2.55e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 49.14 E-value: 2.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 6 LEVKDLetSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLPekisklSNGEVIFDGKRIDTLNEKQ 85
Cdd:TIGR01271 1218 MDVQGL--TAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------TEGEIQIDGVSWNSVTLQT 1289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRGndiaMIFQEpmtalnpVFTIKNQLVESIKSHKKISKKEANNLAKDLLKKVGIA----RQDEILNSYPHQLSGGM 161
Cdd:TIGR01271 1290 WRKAFG----VIPQK-------VFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEqfpdKLDFVLVDGGYVLSNGH 1358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 162 RQRVMIAMAISCSPKLLIADEPTTALD-VTIQAqILDLLKelQKETQMAIMMITHDLSVVAEfCDKVLVMYAGQIVEFGG 240
Cdd:TIGR01271 1359 KQLMCLARSILSKAKILLLDEPSAHLDpVTLQI-IRKTLK--QSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQYDS 1434
|
250
....*....|
gi 777211855 241 IKEILHNPKH 250
Cdd:TIGR01271 1435 IQKLLNETSL 1444
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
25-216 |
3.67e-06 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 48.41 E-value: 3.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILsksiIKLLPEKIsKLSNGEV---------IFDGKR---------IDTLNE-KQ 85
Cdd:PRK11147 335 VKDFSAQVQRGDKIALIGPNGCGKTTL----LKLMLGQL-QADSGRIhcgtklevaYFDQHRaeldpektvMDNLAEgKQ 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 86 LLDIRGND--IAMIFQE----PMTALNPVftiknqlvesikshkkiskkeannlakdllkkvgiarqdeilnsypHQLSG 159
Cdd:PRK11147 410 EVMVNGRPrhVLGYLQDflfhPKRAMTPV----------------------------------------------KALSG 443
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDVtiqaQILDLLKELQKETQMAIMMITHD 216
Cdd:PRK11147 444 GERNRLLLARLFLKPSNLLILDEPTNDLDV----ETLELLEELLDSYQGTVLLVSHD 496
|
|
| PvdE |
COG4615 |
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion ... |
24-82 |
4.56e-06 |
|
ABC-type siderophore export system, fused ATPase and permease components [Inorganic ion transport and metabolism];
Pssm-ID: 443659 [Multi-domain] Cd Length: 547 Bit Score: 48.26 E-value: 4.56e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 777211855 24 TVENISFELSKGEVLGIVGESGCGKSILsksiIKLL-----PEKisklsnGEVIFDGKRIDTLN 82
Cdd:COG4615 347 TLGPIDLTIRRGELVFIVGGNGSGKSTL----AKLLtglyrPES------GEILLDGQPVTADN 400
|
|
| ABC_Class2 |
cd03227 |
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
155-231 |
6.31e-06 |
|
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 45.81 E-value: 6.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 155 HQLSGGMRQRVMIAMAIS-CSPK---LLIADEPTTALDVTIQAQILDLLKE-LQKETQMAImmITHDLSvVAEFCDKVLV 229
Cdd:cd03227 76 LQLSGGEKELSALALILAlASLKprpLYILDEIDRGLDPRDGQALAEAILEhLVKGAQVIV--ITHLPE-LAELADKLIH 152
|
..
gi 777211855 230 MY 231
Cdd:cd03227 153 IK 154
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
28-248 |
9.21e-06 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 47.47 E-value: 9.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 28 ISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLNEKQLLdirgNDIAMIFQEPMTALNP 107
Cdd:PTZ00243 1329 VSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-----EVCGGEIRVNGREIGAYGLRELR----RQFSMIPQDPVLFDGT 1399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 108 VftikNQLVESIKSHKKISKKEAnnlakdlLKKVG----IARQDEILNSypHQLSGGMR----QRVMIAMAISCSPK--- 176
Cdd:PTZ00243 1400 V----RQNVDPFLEASSAEVWAA-------LELVGlrerVASESEGIDS--RVLEGGSNysvgQRQLMCMARALLKKgsg 1466
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 777211855 177 LLIADEPTT----ALDVTIQAQILDLLkelqkeTQMAIMMITHDLSVVAEfCDKVLVMYAGQIVEFGGIKEILHNP 248
Cdd:PTZ00243 1467 FILMDEATAnidpALDRQIQATVMSAF------SAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEMGSPRELVMNR 1535
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
26-237 |
1.02e-05 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 46.85 E-value: 1.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 26 ENISFELSKGEVLGIVGESGCGKSILSKsIIKllpeKISKLSNGEVIF-DGKRIDTL-NEKQL---LDIRGN-------- 92
Cdd:TIGR03719 22 KDISLSFFPGAKIGVLGLNGAGKSTLLR-IMA----GVDKDFNGEARPqPGIKVGYLpQEPQLdptKTVRENveegvaei 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 93 --------DIAMIFQEPMTALNPVFTIKNQLVESIkshkkiskkEANNlAKDLLKKVGIARqdEILNSYP-----HQLSG 159
Cdd:TIGR03719 97 kdaldrfnEISAKYAEPDADFDKLAAEQAELQEII---------DAAD-AWDLDSQLEIAM--DALRCPPwdadvTKLSG 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 777211855 160 GMRQRVMIAMAISCSPKLLIADEPTTALDvtiqAQILDLLKELQKETQMAIMMITHDlsvvAEFCDKVlvmyAGQIVE 237
Cdd:TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEPTNHLD----AESVAWLERHLQEYPGTVVAVTHD----RYFLDNV----AGWILE 230
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
157-231 |
1.23e-05 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 44.87 E-value: 1.23e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 157 LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMITHDLSVVAEFCDKVLVMY 231
Cdd:cd03222 72 LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
25-240 |
1.46e-05 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 46.70 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILsksiIKLLPEKISKLSnGEV-IFDGKRIDTLNEKQLLDIRGNDIAMifqEPMT 103
Cdd:PRK10636 328 LDSIKLNLVPGSRIGLLGRNGAGKSTL----IKLLAGELAPVS-GEIgLAKGIKLGYFAQHQLEFLRADESPL---QHLA 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALNPvftiknqlvesikshkkiskKEANNLAKDLLKKVGIarQDEILNSYPHQLSGGMRQRVMIAMAISCSPKLLIADEP 183
Cdd:PRK10636 400 RLAP--------------------QELEQKLRDYLGGFGF--QGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEP 457
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 184 TTALDVTIQAQILDLLKELQKetqmAIMMITHDLSVVAEFCDKVLVMYAGQIVEFGG 240
Cdd:PRK10636 458 TNHLDLDMRQALTEALIDFEG----ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDG 510
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
27-239 |
1.77e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 44.62 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 27 NISFELSKGEVLGIVGESGCGKS-----ILSKSIIKLLPEKISKLSNGEVIFdgkrIDTLNekqlldirgndiamifqep 101
Cdd:cd03238 13 NLDVSIPLNVLVVVTGVSGSGKStlvneGLYASGKARLISFLPKFSRNKLIF----IDQLQ------------------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 102 mtalnpvFTIKNQLvesikshkkiskkeannlakdllkkvGIARQDEILNSyphqLSGGMRQRVMIA--MAISCSPKLLI 179
Cdd:cd03238 70 -------FLIDVGL--------------------------GYLTLGQKLST----LSGGELQRVKLAseLFSEPPGTLFI 112
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 777211855 180 ADEPTTALDVTIQAQILDLLKEL--QKETqmaIMMITHDLSVVAefcdkvlvmYAGQIVEFG 239
Cdd:cd03238 113 LDEPSTGLHQQDINQLLEVIKGLidLGNT---VILIEHNLDVLS---------SADWIIDFG 162
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
156-245 |
4.28e-05 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 45.12 E-value: 4.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 156 QLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQmaimmithDLSVV--------AEFCDKV 227
Cdd:NF033858 136 KLSGGMKQKLGLCCALIHDPDLLILDEPTTGVDPLSRRQFWELIDRIRAERP--------GMSVLvataymeeAERFDWL 207
|
90
....*....|....*...
gi 777211855 228 LVMYAGQIVEFGGIKEIL 245
Cdd:NF033858 208 VAMDAGRVLATGTPAELL 225
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
136-216 |
5.56e-05 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 43.36 E-value: 5.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 136 DLLKKVGIARQDEI---LNSYPHQLSGGMRQ------RVMIAMAISCSPKLLIADEPTTALDV-TIQAQILDLLKELQKE 205
Cdd:cd03240 92 AILENVIFCHQGESnwpLLDMRGRCSGGEKVlasliiRLALAETFGSNCGILALDEPTTNLDEeNIEESLAEIIEERKSQ 171
|
90
....*....|.
gi 777211855 206 TQMAIMMITHD 216
Cdd:cd03240 172 KNFQLIVITHD 182
|
|
| ABCC_CFTR1 |
cd03291 |
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The ... |
25-257 |
5.72e-05 |
|
ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C; The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213258 [Multi-domain] Cd Length: 282 Bit Score: 44.08 E-value: 5.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 25 VENISFELSKGEVLGIVGESGCGKSILSKSII-KLLPekisklSNGEVIFDGKridtlnekqlldirgndiamIFQEPMT 103
Cdd:cd03291 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILgELEP------SEGKIKHSGR--------------------ISFSSQF 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 104 ALNPVFTIKNQLVESIK--SHKKISKKEANNLAKDLLKkvgIARQDE-ILNSYPHQLSGGMRQRVMIAMAISCSPKLLIA 180
Cdd:cd03291 107 SWIMPGTIKENIIFGVSydEYRYKSVVKACQLEEDITK---FPEKDNtVLGEGGITLSGGQRARISLARAVYKDADLYLL 183
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 777211855 181 DEPTTALDVTIQAQILD--LLKELQKETQMAIMMITHDLSVVaefcDKVLVMYAGQIVEFGGIKEiLHNPKHPYTQKLL 257
Cdd:cd03291 184 DSPFGYLDVFTEKEIFEscVCKLMANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGTFSE-LQSLRPDFSSKLM 257
|
|
| ABCC_SUR2 |
cd03288 |
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The ... |
7-253 |
2.25e-04 |
|
ATP-binding cassette domain 2 of the sulfonylurea receptor SUR; The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213255 [Multi-domain] Cd Length: 257 Bit Score: 42.20 E-value: 2.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 7 EVKDLETSLKINNEWLATVENISFELSKGEVLGIVGESGCGKSILSKSIIKLLpekisKLSNGEVIFDGKRIDTLnekQL 86
Cdd:cd03288 19 EIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV-----DIFDGKIVIDGIDISKL---PL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 87 LDIRGNdIAMIFQEPMtalnpVF--TIKNQLvESIKSHKKISKKEANNLA--KDLLKKV--GIarqDEILNSYPHQLSGG 160
Cdd:cd03288 91 HTLRSR-LSIILQDPI-----LFsgSIRFNL-DPECKCTDDRLWEALEIAqlKNMVKSLpgGL---DAVVTEGGENFSVG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 161 MRQRVMIAMAISCSPKLLIADEPTTALDVTIQaqildllKELQKETQMA-----IMMITHDLSVVAEfCDKVLVMYAGQI 235
Cdd:cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATE-------NILQKVVMTAfadrtVVTIAHRVSTILD-ADLVLVLSRGIL 232
|
250
....*....|....*...
gi 777211855 236 VEFGGIKEILHNPKHPYT 253
Cdd:cd03288 233 VECDTPENLLAQEDGVFA 250
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
155-240 |
3.41e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 42.15 E-value: 3.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 155 HQLSGGMRQRVMIAMAISCSPKLLIADEPTTALDV-TIQAQILDLLKelqkeTQMAIMMITHDLSVVAEFCDKVLVMYAG 233
Cdd:PLN03073 626 YTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLdAVEALIQGLVL-----FQGGVLMVSHDEHLISGSVDELWVVSEG 700
|
....*..
gi 777211855 234 QIVEFGG 240
Cdd:PLN03073 701 KVTPFHG 707
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
156-290 |
5.92e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 41.38 E-value: 5.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 156 QLSGGMRQRVMIAMAISCSPKLLIADEPTTALDVtiqAQILDLLKELQKETQMAIMmithdLSVVAEFCDKVLVmyagQI 235
Cdd:PLN03073 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL---HAVLWLETYLLKWPKTFIV-----VSHAREFLNTVVT----DI 411
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 777211855 236 VEFGGIKeiLHNPKHPYTQKLLSTIPKLKEEQKRLETIEGIVPSIQAFhVNKCRF 290
Cdd:PLN03073 412 LHLHGQK--LVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAF-IDKFRY 463
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
157-220 |
4.21e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 38.84 E-value: 4.21e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 157 LSGGMRQRVMIAMAIS---CSPKLLIADEPTTAL---DVtiqAQILDLLKELQKETQmAIMMITHDLSVV 220
Cdd:TIGR00630 830 LSGGEAQRIKLAKELSkrsTGRTLYILDEPTTGLhfdDI---KKLLEVLQRLVDKGN-TVVVIEHNLDVI 895
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
157-286 |
4.55e-03 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 39.04 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 157 LSGGMRQRVMIA---MAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQmAIMMITHDLSVVaEFCDKVLVM--- 230
Cdd:PRK00635 810 LSGGEIQRLKLAyelLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH-TVVIIEHNMHVV-KVADYVLELgpe 887
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 777211855 231 ---YAGQIVEFGGIKEILHnpKHPYTQKLLS-------TIPKLKEEQKRLETIEGIvpSIQ-AFHVN 286
Cdd:PRK00635 888 ggnLGGYLLASCSPEELIH--LHTPTAKALRpylsspqELPYLPDPSPKPPVPADI--TIKnAYQHN 950
|
|
| COG4637 |
COG4637 |
Predicted ATPase [General function prediction only]; |
153-231 |
5.99e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 37.99 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 153 YPHQLSGGMRQrvMIAMAISC----SPKLLIADEPTTALDVTIQAQILDLLKELQKETQmaIMMITHDLSVVAEFCDK-V 227
Cdd:COG4637 255 PARELSDGTLR--FLALLAALlsprPPPLLCIEEPENGLHPDLLPALAELLREASERTQ--VIVTTHSPALLDALEPEeV 330
|
....
gi 777211855 228 LVMY 231
Cdd:COG4637 331 LVLE 334
|
|
| PLN03140 |
PLN03140 |
ABC transporter G family member; Provisional |
157-245 |
7.63e-03 |
|
ABC transporter G family member; Provisional
Pssm-ID: 215599 [Multi-domain] Cd Length: 1470 Bit Score: 38.29 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 777211855 157 LSGGMRQRVMIAMAISCSPKLLIADEPTTALDVTIQAQILDLLKELQKETQMAIMMI-------THDLsvvaefCDKVLV 229
Cdd:PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSllqpapeTFDL------FDDIIL 410
|
90
....*....|....*.
gi 777211855 230 MYAGQIVEFGGIKEIL 245
Cdd:PLN03140 411 LSEGQIVYQGPRDHIL 426
|
|
| |
