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Conserved domains on  [gi|801237228|emb|CFB05500|]
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acyl-CoA dehydrogenase [Mycobacterium tuberculosis]

Protein Classification

acyl-CoA dehydrogenase family protein( domain architecture ID 11449302)

acyl-CoA dehydrogenase family protein similar to Mycobacterium tuberculosis acyl-CoA dehydrogenase FadE6

Gene Ontology:  GO:0050660|GO:0016627
PubMed:  12504675

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ACAD_fadE6_17_26 cd01152
Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Putative acyl-CoA ...
367-726 1.79e-165

Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.


:

Pssm-ID: 173841 [Multi-domain]  Cd Length: 380  Bit Score: 481.46  E-value: 1.79e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 367 PSTEKLRAQIRAEVAALKA---------------MPREPRTVAIAEGGWVLPYLPKPWG-RAASPVEQIIIAQEFTAGRV 430
Cdd:cd01152    1 PSEEAFRAEVRAWLAAHLPpelreesalgyregrEDRRRWQRALAAAGWAAPGWPKEYGgRGASLMEQLIFREEMAAAGA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 431 KRPQIAIAT-WIVPSIVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQY 509
Cdd:cd01152   81 PVPFNQIGIdLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHY 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 510 SQWGALLARTDPSAPKHNGITYFLLDMKSEGVQVKPLRELTGKEFFNTVYLDDVFVPDELVLGEVNRGWEVSRNTLTAER 589
Cdd:cd01152  161 ADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSINGGEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFER 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 590 VSIGGSDSTFLPTLGEFVDFVRDYRFEGQFDQVARHRAGQLIAEGHATKLLNLRSTLLTLAGGDPMAPAAISKLLSMRTG 669
Cdd:cd01152  241 VSIGGSAATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKLFGSELA 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 670 QGYAEFAVSSFGTDAVIGD---TERLPGKWGEYLLASRATTIYGGTSEVQLNIIAERLLG 726
Cdd:cd01152  321 QELAELALELLGTAALLRDpapGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380
CaiA COG1960
Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and ...
1-336 1.70e-39

Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and metabolism]; Acyl-CoA dehydrogenase related to the alkylation response protein AidB is part of the Pathway/BioSystem: Fatty acid biosynthesis


:

Pssm-ID: 441563 [Multi-domain]  Cd Length: 381  Bit Score: 149.99  E-value: 1.70e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228   1 MSIAITPEHYELADSVRSLVAR-VAPsevLHAALESPVENPPPYWQAAAEQGLQGVHLAESVGGQGFGILELAVVLAEFG 79
Cdd:COG1960    1 MDFELTEEQRALRDEVREFAEEeIAP---EAREWDREGEFPRELWRKLAELGLLGLTIPEEYGGLGLSLVELALVLEELA 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  80 YGAVPGPFVPSAIASALIAAH----DPQ-AKVLAELATGAAIAAYAL---DSG-------LTATRHGDVLVIRGEVRAVP 144
Cdd:COG1960   78 RADASLALPVGVHNGAAEALLrfgtEEQkERYLPRLASGEWIGAFALtepGAGsdaaalrTTAVRDGDGYVLNGQKTFIT 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 145 AAAQASVLVLPVAIESRDE-----WVVLRNDQLEIEAVKSLDPL----RPIAHVRANAVDVSDDALLSNLTMTTAhALMS 215
Cdd:COG1960  158 NAPVADVILVLARTDPAAGhrgisLFLVPKDTPGVTVGRIEDKMglrgSDTGELFFDDVRVPAENLLGEEGKGFK-IAMS 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 216 TL------LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAGESSSDV- 288
Cdd:COG1960  237 TLnagrlgLAAQALGIAEAALELAVAYAREREQFGRPIADFQAVQHRLADMAAELEAARALVYRAAWLLDAGEDAALEAa 316
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 801237228 289 -------EfaaavaatlapaTAQRCTQDCIQVHGGIGFTWEHDTNVYYRRALMLA 336
Cdd:COG1960  317 maklfatE------------AALEVADEALQIHGGYGYTREYPLERLYRDARILT 359
 
Name Accession Description Interval E-value
ACAD_fadE6_17_26 cd01152
Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Putative acyl-CoA ...
367-726 1.79e-165

Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.


Pssm-ID: 173841 [Multi-domain]  Cd Length: 380  Bit Score: 481.46  E-value: 1.79e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 367 PSTEKLRAQIRAEVAALKA---------------MPREPRTVAIAEGGWVLPYLPKPWG-RAASPVEQIIIAQEFTAGRV 430
Cdd:cd01152    1 PSEEAFRAEVRAWLAAHLPpelreesalgyregrEDRRRWQRALAAAGWAAPGWPKEYGgRGASLMEQLIFREEMAAAGA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 431 KRPQIAIAT-WIVPSIVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQY 509
Cdd:cd01152   81 PVPFNQIGIdLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHY 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 510 SQWGALLARTDPSAPKHNGITYFLLDMKSEGVQVKPLRELTGKEFFNTVYLDDVFVPDELVLGEVNRGWEVSRNTLTAER 589
Cdd:cd01152  161 ADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSINGGEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFER 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 590 VSIGGSDSTFLPTLGEFVDFVRDYRFEGQFDQVARHRAGQLIAEGHATKLLNLRSTLLTLAGGDPMAPAAISKLLSMRTG 669
Cdd:cd01152  241 VSIGGSAATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKLFGSELA 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 670 QGYAEFAVSSFGTDAVIGD---TERLPGKWGEYLLASRATTIYGGTSEVQLNIIAERLLG 726
Cdd:cd01152  321 QELAELALELLGTAALLRDpapGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380
CaiA COG1960
Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and ...
362-729 1.49e-73

Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and metabolism]; Acyl-CoA dehydrogenase related to the alkylation response protein AidB is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 441563 [Multi-domain]  Cd Length: 381  Bit Score: 243.21  E-value: 1.49e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 362 DIDLDPSTEKLRAQIR-----------AEVAALKAMPREPRTvAIAEGGWVLPYLPKPW-GRAASPVEQIIIAQEFTAGR 429
Cdd:COG1960    2 DFELTEEQRALRDEVRefaeeeiapeaREWDREGEFPRELWR-KLAELGLLGLTIPEEYgGLGLSLVELALVLEELARAD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 430 VKRPQIAIATWIV-PSIVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQ 508
Cdd:COG1960   81 ASLALPVGVHNGAaEALLRFGTEEQKERYLPRLASGEWIGAFALTEPGAGSDAAALRTTAVRDGDGYVLNGQKTFITNAP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 509 YSQWGALLARTDPsAPKHNGITYFLLDMKSEGVQVKPLRELTGKEFFNT--VYLDDVFVPDELVLGEVNRGWEVSRNTLT 586
Cdd:COG1960  161 VADVILVLARTDP-AAGHRGISLFLVPKDTPGVTVGRIEDKMGLRGSDTgeLFFDDVRVPAENLLGEEGKGFKIAMSTLN 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 587 AERVSIGGSdstflpTLG-------EFVDFVRDYRfegQF------DQVARHRAGQLIAEGHATKLLNLRSTLLTLAGGD 653
Cdd:COG1960  240 AGRLGLAAQ------ALGiaeaaleLAVAYARERE---QFgrpiadFQAVQHRLADMAAELEAARALVYRAAWLLDAGED 310
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 801237228 654 PMAPAAISKLLSMRTGQGYAEFAVSSFGTDAVIGDTErlpgkWGEYLLASRATTIYGGTSEVQLNIIAERLLGLPR 729
Cdd:COG1960  311 AALEAAMAKLFATEAALEVADEALQIHGGYGYTREYP-----LERLYRDARILTIYEGTNEIQRLIIARRLLGRPG 381
pimC_large TIGR03204
pimeloyl-CoA dehydrogenase, large subunit; Members of this protein family are the PimC ...
399-727 3.76e-56

pimeloyl-CoA dehydrogenase, large subunit; Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.


Pssm-ID: 132248 [Multi-domain]  Cd Length: 395  Bit Score: 197.17  E-value: 3.76e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  399 GWVLPYLPKPWGRAA-SPVEQIIIAQEFTAGRVKRPQIAIATWIVPSIVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGA 477
Cdd:TIGR03204  53 GWGVSHWPKQYGGTGwTSVQHYIFNEELQSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGS 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  478 GSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALLARTDPSAPKHNGITYFLLDMKSEGVQVKPLRELTGKEFFNT 557
Cdd:TIGR03204 133 GSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDGGVEVNE 212
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  558 VYLDDVFVPDELVLGEVNRGWEVSRNTLTAERVSIG--GSDSTFLPTLGEFVDFVRDYRFEGQFDQVARHRAGQLIAEGH 635
Cdd:TIGR03204 213 VFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIArvGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELK 292
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  636 ATKLLNLRstLLTLAG----GDPMAPAAISKLLSMRTGQGYAEFAVSSFGTDAVIGDTERLPG-----KWGEYLLAS--- 703
Cdd:TIGR03204 293 ALELTQLR--VVADEGkhgkGKPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGsneamDWTAQIAPSyfn 370
                         330       340
                  ....*....|....*....|....*
gi 801237228  704 -RATTIYGGTSEVQLNIIAERLLGL 727
Cdd:TIGR03204 371 nRKVSIYGGSNEIQRNIIAKAVLGL 395
CaiA COG1960
Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and ...
1-336 1.70e-39

Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and metabolism]; Acyl-CoA dehydrogenase related to the alkylation response protein AidB is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 441563 [Multi-domain]  Cd Length: 381  Bit Score: 149.99  E-value: 1.70e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228   1 MSIAITPEHYELADSVRSLVAR-VAPsevLHAALESPVENPPPYWQAAAEQGLQGVHLAESVGGQGFGILELAVVLAEFG 79
Cdd:COG1960    1 MDFELTEEQRALRDEVREFAEEeIAP---EAREWDREGEFPRELWRKLAELGLLGLTIPEEYGGLGLSLVELALVLEELA 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  80 YGAVPGPFVPSAIASALIAAH----DPQ-AKVLAELATGAAIAAYAL---DSG-------LTATRHGDVLVIRGEVRAVP 144
Cdd:COG1960   78 RADASLALPVGVHNGAAEALLrfgtEEQkERYLPRLASGEWIGAFALtepGAGsdaaalrTTAVRDGDGYVLNGQKTFIT 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 145 AAAQASVLVLPVAIESRDE-----WVVLRNDQLEIEAVKSLDPL----RPIAHVRANAVDVSDDALLSNLTMTTAhALMS 215
Cdd:COG1960  158 NAPVADVILVLARTDPAAGhrgisLFLVPKDTPGVTVGRIEDKMglrgSDTGELFFDDVRVPAENLLGEEGKGFK-IAMS 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 216 TL------LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAGESSSDV- 288
Cdd:COG1960  237 TLnagrlgLAAQALGIAEAALELAVAYAREREQFGRPIADFQAVQHRLADMAAELEAARALVYRAAWLLDAGEDAALEAa 316
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 801237228 289 -------EfaaavaatlapaTAQRCTQDCIQVHGGIGFTWEHDTNVYYRRALMLA 336
Cdd:COG1960  317 maklfatE------------AALEVADEALQIHGGYGYTREYPLERLYRDARILT 359
PRK12341 PRK12341
acyl-CoA dehydrogenase;
444-725 2.39e-22

acyl-CoA dehydrogenase;


Pssm-ID: 183454 [Multi-domain]  Cd Length: 381  Bit Score: 99.80  E-value: 2.39e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 444 SIVAFGTDNQKQRLLPPTF-RGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALLARTDPS 522
Cdd:PRK12341  95 SMRRFGSAEQLRKTAESTLeTGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDPQP 174
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 523 APKHNGITYFLLDMKSEGVQVKPLRELtGKEFFNT--VYLDDVFVPDELVLGEVNRGW-------EVSRntLTAERVSIG 593
Cdd:PRK12341 175 KDPKKAFTLWWVDSSKPGIKINPLHKI-GWHMLSTceVYLDNVEVEESDLVGEEGMGFlnvmynfEMER--LINAARSLG 251
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 594 GSDstflptlGEFVDFVRDYRFEGQFDQVARHRagQLIAEG---HATKLLNLRSTLLTLA----GGDPMA-PAAISKLLS 665
Cdd:PRK12341 252 FAE-------CAFEDAARYANQRIQFGKPIGHN--QLIQEKltlMAIKIENMRNMVYKVAwqadNGQSLRtSAALAKLYC 322
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 801237228 666 MRTGQGYAEFAVSSFGTdavIGDTE--RLPGKWGEyllaSRATTIYGGTSEVQLNIIAERLL 725
Cdd:PRK12341 323 ARTAMEVIDDAIQIMGG---LGYTDeaRVSRFWRD----VRCERIGGGTDEIMIYIAGRQIL 377
ACAD cd00567
Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal ...
7-335 4.64e-21

Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC)


Pssm-ID: 173838 [Multi-domain]  Cd Length: 327  Bit Score: 95.04  E-value: 4.64e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228   7 PEHYELADSVRSLVARVAPSEVLHAAlespvENPPPYWQAAAEQGLQGVHLAesvggqgfgilelavvLAEFGYGAVpgp 86
Cdd:cd00567    1 EEQRELRDSAREFAAEELEPYARERR-----ETPEEPWELLAELGLLLGAAL----------------LLAYGTEEQ--- 56
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  87 fvpsaiasaliaahdpQAKVLAELATGAAIAAYAL---DSG-------LTATRHGDVLVIRGEVRAVPAAAQASV-LVLP 155
Cdd:cd00567   57 ----------------KERYLPPLASGEAIAAFALtepGAGsdlagirTTARKDGDGYVLNGRKIFISNGGDADLfIVLA 120
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 156 VAIESRDEW-------VVLRNDQLEIEAVKSLDPLR--PIAHVRANAVDVSDDALL------SNLTMTTAhALMSTLLSA 220
Cdd:cd00567  121 RTDEEGPGHrgisaflVPADTPGVTVGRIWDKMGMRgsGTGELVFDDVRVPEDNLLgeegggFELAMKGL-NVGRLLLAA 199
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 221 EAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAgesSSDVEFAAAVAATLAP 300
Cdd:cd00567  200 VALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQG---PDEARLEAAMAKLFAT 276
                        330       340       350
                 ....*....|....*....|....*....|....*
gi 801237228 301 ATAQRCTQDCIQVHGGIGFTWEHDTNVYYRRALML 335
Cdd:cd00567  277 EAAREVADLAMQIHGGRGYSREYPVERYLRDARAA 311
Acyl-CoA_dh_1 pfam00441
Acyl-CoA dehydrogenase, C-terminal domain; C-terminal domain of Acyl-CoA dehydrogenase is an ...
217-335 5.93e-20

Acyl-CoA dehydrogenase, C-terminal domain; C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.


Pssm-ID: 395354 [Multi-domain]  Cd Length: 149  Bit Score: 86.92  E-value: 5.93e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  217 LLSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAGESSSDVefaaAVAA 296
Cdd:pfam00441  17 AIAAMALGLARRALDEALAYARRRKAFGRPLIDFQLVRHKLAEMAAEIEAARLLVYRAAEALDAGGPDGAEA----SMAK 92
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 801237228  297 TLAPATAQRCTQDCIQVHGGIGFTWEHDTNVYYRRALML 335
Cdd:pfam00441  93 LYASEAAVEVADLAMQLHGGYGYLREYPVERLYRDARVL 131
Acyl-CoA_dh_M pfam02770
Acyl-CoA dehydrogenase, middle domain; Central domain of Acyl-CoA dehydrogenase has a ...
469-551 1.79e-18

Acyl-CoA dehydrogenase, middle domain; Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold.


Pssm-ID: 460685 [Multi-domain]  Cd Length: 95  Bit Score: 80.79  E-value: 1.79e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  469 CQLFSEPGAGSDLASLATKA-TRVDGGWRITGQKIWTTGAQYSQWGALLARTDPsAPKHNGITYFLLDMKSEGVQVKPLR 547
Cdd:pfam02770   1 AFALTEPGAGSDVASLKTTAaDGDGGGWVLNGTKWWITNAGIADLFLVLARTGG-DDRHGGISLFLVPKDAPGVSVRRIE 79

                  ....
gi 801237228  548 ELTG 551
Cdd:pfam02770  80 TKLG 83
PRK12341 PRK12341
acyl-CoA dehydrogenase;
1-323 5.46e-12

acyl-CoA dehydrogenase;


Pssm-ID: 183454 [Multi-domain]  Cd Length: 381  Bit Score: 68.22  E-value: 5.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228   1 MSIAITPEHYELADSVRSLVARVAPSEVLHAALESPVeNPPPYWQAAAEQGLQGVHLAESVGGQGFGILELAVVLAEFGY 80
Cdd:PRK12341   1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGT-YPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSK 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  81 GAVPGPFVPSAIASALIAAH--DPQAKVLAELATGAAIAAYAL----------DSGLTAT---RHGDVlVIRGEVRAVPA 145
Cdd:PRK12341  80 CGAPAFLITNGQCIHSMRRFgsAEQLRKTAESTLETGDPAYALaltepgagsdNNSATTTytrKNGKV-YLNGQKTFITG 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 146 AAQAS-VLVLPVAIESRDE------WVVLRNDQleieAVKsLDPLRPIA-HVRANA------VDVSDDALLSNLTMTTAH 211
Cdd:PRK12341 159 AKEYPyMLVLARDPQPKDPkkaftlWWVDSSKP----GIK-INPLHKIGwHMLSTCevyldnVEVEESDLVGEEGMGFLN 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 212 AL----MSTLL-SAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDaGESss 286
Cdd:PRK12341 234 VMynfeMERLInAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADN-GQS-- 310
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 801237228 287 dVEFAAAVAATLAPATAQRCTQDCIQVHGGIGFTWEH 323
Cdd:PRK12341 311 -LRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEA 346
 
Name Accession Description Interval E-value
ACAD_fadE6_17_26 cd01152
Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Putative acyl-CoA ...
367-726 1.79e-165

Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.


Pssm-ID: 173841 [Multi-domain]  Cd Length: 380  Bit Score: 481.46  E-value: 1.79e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 367 PSTEKLRAQIRAEVAALKA---------------MPREPRTVAIAEGGWVLPYLPKPWG-RAASPVEQIIIAQEFTAGRV 430
Cdd:cd01152    1 PSEEAFRAEVRAWLAAHLPpelreesalgyregrEDRRRWQRALAAAGWAAPGWPKEYGgRGASLMEQLIFREEMAAAGA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 431 KRPQIAIAT-WIVPSIVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQY 509
Cdd:cd01152   81 PVPFNQIGIdLAGPTILAYGTDEQKRRFLPPILSGEEIWCQGFSEPGAGSDLAGLRTRAVRDGDDWVVNGQKIWTSGAHY 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 510 SQWGALLARTDPSAPKHNGITYFLLDMKSEGVQVKPLRELTGKEFFNTVYLDDVFVPDELVLGEVNRGWEVSRNTLTAER 589
Cdd:cd01152  161 ADWAWLLVRTDPEAPKHRGISILLVDMDSPGVTVRPIRSINGGEFFNEVFLDDVRVPDANRVGEVNDGWKVAMTTLNFER 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 590 VSIGGSDSTFLPTLGEFVDFVRDYRFEGQFDQVARHRAGQLIAEGHATKLLNLRSTLLTLAGGDPMAPAAISKLLSMRTG 669
Cdd:cd01152  241 VSIGGSAATFFELLLARLLLLTRDGRPLIDDPLVRQRLARLEAEAEALRLLVFRLASALAAGKPPGAEASIAKLFGSELA 320
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 670 QGYAEFAVSSFGTDAVIGD---TERLPGKWGEYLLASRATTIYGGTSEVQLNIIAERLLG 726
Cdd:cd01152  321 QELAELALELLGTAALLRDpapGAELAGRWEADYLRSRATTIYGGTSEIQRNIIAERLLG 380
CaiA COG1960
Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and ...
362-729 1.49e-73

Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and metabolism]; Acyl-CoA dehydrogenase related to the alkylation response protein AidB is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 441563 [Multi-domain]  Cd Length: 381  Bit Score: 243.21  E-value: 1.49e-73
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 362 DIDLDPSTEKLRAQIR-----------AEVAALKAMPREPRTvAIAEGGWVLPYLPKPW-GRAASPVEQIIIAQEFTAGR 429
Cdd:COG1960    2 DFELTEEQRALRDEVRefaeeeiapeaREWDREGEFPRELWR-KLAELGLLGLTIPEEYgGLGLSLVELALVLEELARAD 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 430 VKRPQIAIATWIV-PSIVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQ 508
Cdd:COG1960   81 ASLALPVGVHNGAaEALLRFGTEEQKERYLPRLASGEWIGAFALTEPGAGSDAAALRTTAVRDGDGYVLNGQKTFITNAP 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 509 YSQWGALLARTDPsAPKHNGITYFLLDMKSEGVQVKPLRELTGKEFFNT--VYLDDVFVPDELVLGEVNRGWEVSRNTLT 586
Cdd:COG1960  161 VADVILVLARTDP-AAGHRGISLFLVPKDTPGVTVGRIEDKMGLRGSDTgeLFFDDVRVPAENLLGEEGKGFKIAMSTLN 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 587 AERVSIGGSdstflpTLG-------EFVDFVRDYRfegQF------DQVARHRAGQLIAEGHATKLLNLRSTLLTLAGGD 653
Cdd:COG1960  240 AGRLGLAAQ------ALGiaeaaleLAVAYARERE---QFgrpiadFQAVQHRLADMAAELEAARALVYRAAWLLDAGED 310
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 801237228 654 PMAPAAISKLLSMRTGQGYAEFAVSSFGTDAVIGDTErlpgkWGEYLLASRATTIYGGTSEVQLNIIAERLLGLPR 729
Cdd:COG1960  311 AALEAAMAKLFATEAALEVADEALQIHGGYGYTREYP-----LERLYRDARILTIYEGTNEIQRLIIARRLLGRPG 381
pimC_large TIGR03204
pimeloyl-CoA dehydrogenase, large subunit; Members of this protein family are the PimC ...
399-727 3.76e-56

pimeloyl-CoA dehydrogenase, large subunit; Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.


Pssm-ID: 132248 [Multi-domain]  Cd Length: 395  Bit Score: 197.17  E-value: 3.76e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  399 GWVLPYLPKPWGRAA-SPVEQIIIAQEFTAGRVKRPQIAIATWIVPSIVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGA 477
Cdd:TIGR03204  53 GWGVSHWPKQYGGTGwTSVQHYIFNEELQSAPAPQPLAFGVSMVGPVIYTFGNEEQKKRFLPRIANVDDWWCQGFSEPGS 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  478 GSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALLARTDPSAPKHNGITYFLLDMKSEGVQVKPLRELTGKEFFNT 557
Cdd:TIGR03204 133 GSDLASLKTKAEKKGDKWIINGQKTWTTLAQHADWIFCLCRTDPTAKKQMGISFILVDMKSKGITVRPIQTIDGGVEVNE 212
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  558 VYLDDVFVPDELVLGEVNRGWEVSRNTLTAERVSIG--GSDSTFLPTLGEFVDFVRDYRFEGQFDQVARHRAGQLIAEGH 635
Cdd:TIGR03204 213 VFFDDVEVPYENLVGEENKGWDYAKFLLGNERTGIArvGVSKERIRRIKDLAAKVESGGKPVIEDAKFREKLAAVEIELK 292
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  636 ATKLLNLRstLLTLAG----GDPMAPAAISKLLSMRTGQGYAEFAVSSFGTDAVIGDTERLPG-----KWGEYLLAS--- 703
Cdd:TIGR03204 293 ALELTQLR--VVADEGkhgkGKPNPASSVLKIKGSEIQQATTELLMEVIGPFAAPYDVHGDDGsneamDWTAQIAPSyfn 370
                         330       340
                  ....*....|....*....|....*
gi 801237228  704 -RATTIYGGTSEVQLNIIAERLLGL 727
Cdd:TIGR03204 371 nRKVSIYGGSNEIQRNIIAKAVLGL 395
ACAD cd00567
Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal ...
445-722 9.36e-46

Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC)


Pssm-ID: 173838 [Multi-domain]  Cd Length: 327  Bit Score: 166.31  E-value: 9.36e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 445 IVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALLARTDPSAP 524
Cdd:cd00567   48 LLAYGTEEQKERYLPPLASGEAIAAFALTEPGAGSDLAGIRTTARKDGDGYVLNGRKIFISNGGDADLFIVLARTDEEGP 127
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 525 KHNGITYFLLDMKSEGVQVKPLRELTG--KEFFNTVYLDDVFVPDELVLGEVNRGWEVSRNTLTAERV-----SIGGSDS 597
Cdd:cd00567  128 GHRGISAFLVPADTPGVTVGRIWDKMGmrGSGTGELVFDDVRVPEDNLLGEEGGGFELAMKGLNVGRLllaavALGAARA 207
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 598 tflpTLGEFVDFVRDYRfegQFD------QVARHRAGQLIAEGHATKLLnLRSTLLTLAGGDPMAP--AAISKLLSMRTG 669
Cdd:cd00567  208 ----ALDEAVEYAKQRK---QFGkplaefQAVQFKLADMAAELEAARLL-LYRAAWLLDQGPDEARleAAMAKLFATEAA 279
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 801237228 670 QGYAEFAVSSFGTDAVIGDT--ERlpgkwgeYLLASRATTIYGGTSEVQLNIIAE 722
Cdd:cd00567  280 REVADLAMQIHGGRGYSREYpvER-------YLRDARAARIAEGTAEIQRLIIAR 327
CaiA COG1960
Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and ...
1-336 1.70e-39

Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and metabolism]; Acyl-CoA dehydrogenase related to the alkylation response protein AidB is part of the Pathway/BioSystem: Fatty acid biosynthesis


Pssm-ID: 441563 [Multi-domain]  Cd Length: 381  Bit Score: 149.99  E-value: 1.70e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228   1 MSIAITPEHYELADSVRSLVAR-VAPsevLHAALESPVENPPPYWQAAAEQGLQGVHLAESVGGQGFGILELAVVLAEFG 79
Cdd:COG1960    1 MDFELTEEQRALRDEVREFAEEeIAP---EAREWDREGEFPRELWRKLAELGLLGLTIPEEYGGLGLSLVELALVLEELA 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  80 YGAVPGPFVPSAIASALIAAH----DPQ-AKVLAELATGAAIAAYAL---DSG-------LTATRHGDVLVIRGEVRAVP 144
Cdd:COG1960   78 RADASLALPVGVHNGAAEALLrfgtEEQkERYLPRLASGEWIGAFALtepGAGsdaaalrTTAVRDGDGYVLNGQKTFIT 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 145 AAAQASVLVLPVAIESRDE-----WVVLRNDQLEIEAVKSLDPL----RPIAHVRANAVDVSDDALLSNLTMTTAhALMS 215
Cdd:COG1960  158 NAPVADVILVLARTDPAAGhrgisLFLVPKDTPGVTVGRIEDKMglrgSDTGELFFDDVRVPAENLLGEEGKGFK-IAMS 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 216 TL------LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAGESSSDV- 288
Cdd:COG1960  237 TLnagrlgLAAQALGIAEAALELAVAYAREREQFGRPIADFQAVQHRLADMAAELEAARALVYRAAWLLDAGEDAALEAa 316
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 801237228 289 -------EfaaavaatlapaTAQRCTQDCIQVHGGIGFTWEHDTNVYYRRALMLA 336
Cdd:COG1960  317 maklfatE------------AALEVADEALQIHGGYGYTREYPLERLYRDARILT 359
SCAD_SBCAD cd01158
Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA ...
369-726 1.85e-36

Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases; Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.


Pssm-ID: 173847 [Multi-domain]  Cd Length: 373  Bit Score: 141.25  E-value: 1.85e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 369 TEKLRAQIRAEVAALKAMPREpRTVAIAEGGWVLPYLPKPWGRAASPVEQIIIAQE------FTAGRVKRPQIAIATWIv 442
Cdd:cd01158   14 AEKEIAPLAAEMDEKGEFPRE-VIKEMAELGLMGIPIPEEYGGAGLDFLAYAIAIEelakvdASVAVIVSVHNSLGANP- 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 443 psIVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALLARTDPS 522
Cdd:cd01158   92 --IIKFGTEEQKKKYLPPLATGEKIGAFALSEPGAGSDAAALKTTAKKDGDDYVLNGSKMWITNGGEADFYIVFAVTDPS 169
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 523 ApKHNGITYFLLDMKSEGVQV-KPLRELtGKEFFNT--VYLDDVFVPDELVLGEVNRGWEVSRNTLTAERVSIgGSDSTF 599
Cdd:cd01158  170 K-GYRGITAFIVERDTPGLSVgKKEDKL-GIRGSSTteLIFEDVRVPKENILGEEGEGFKIAMQTLDGGRIGI-AAQALG 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 600 LP--TLGEFVDFVRDYRfegQFD------QVARHRAGQLIAEGHATKLLNLRSTLLTLAGGDPMAPAAISKLLSMRTGQG 671
Cdd:cd01158  247 IAqaALDAAVDYAKERK---QFGkpiadfQGIQFKLADMATEIEAARLLTYKAARLKDNGEPFIKEAAMAKLFASEVAMR 323
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 801237228 672 YAEFAVSSFGTdavIGDTERLPGKwgEYLLASRATTIYGGTSEVQLNIIAERLLG 726
Cdd:cd01158  324 VTTDAVQIFGG---YGYTKDYPVE--RYYRDAKITEIYEGTSEIQRLVIAKHLLK 373
LCAD cd01160
Long chain acyl-CoA dehydrogenase; LCAD is an acyl-CoA dehydrogenases (ACAD), which is found ...
390-725 1.45e-27

Long chain acyl-CoA dehydrogenase; LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.


Pssm-ID: 173849 [Multi-domain]  Cd Length: 372  Bit Score: 115.29  E-value: 1.45e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 390 PRTV--AIAEGGWVLPYLPKPWGRAASPV-EQIIIAQEFTAGRVKRPQIAIATWIV-PSIVAFGTDNQKQRLLPPTFRGD 465
Cdd:cd01160   32 PREVwrKAGEQGLLGVGFPEEYGGIGGDLlSAAVLWEELARAGGSGPGLSLHTDIVsPYITRAGSPEQKERVLPQMVAGK 111
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 466 IFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALLARTDPSAPKHNGITYFLLDMKSEGVQV-K 544
Cdd:cd01160  112 KIGAIAMTEPGAGSDLQGIRTTARKDGDHYVLNGSKTFITNGMLADVVIVVARTGGEARGAGGISLFLVERGTPGFSRgR 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 545 PLREL------TGKEFFntvylDDVFVPDELVLGEVNRGWEVSRNTLTAERVSIG-GSDSTFLPTLGEFVDFVRDYRFEG 617
Cdd:cd01160  192 KLKKMgwkaqdTAELFF-----DDCRVPAENLLGEENKGFYYLMQNLPQERLLIAaGALAAAEFMLEETRNYVKQRKAFG 266
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 618 QF---DQVARHRAGQLIAEGHATKLLNLRSTLLTLAGGDPMAPAAISKLLSMRTgqgyaefavssfgTDAVIGDTERLPG 694
Cdd:cd01160  267 KTlaqLQVVRHKIAELATKVAVTRAFLDNCAWRHEQGRLDVAEASMAKYWATEL-------------QNRVAYECVQLHG 333
                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 801237228 695 KWG---EYLLA-----SRATTIYGGTSEVQLNIIAERLL 725
Cdd:cd01160  334 GWGymrEYPIArayrdARVQPIYGGTTEIMKELISRQMV 372
IVD cd01156
Isovaleryl-CoA dehydrogenase; Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA ...
410-724 1.43e-22

Isovaleryl-CoA dehydrogenase; Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.


Pssm-ID: 173845 [Multi-domain]  Cd Length: 376  Bit Score: 100.18  E-value: 1.43e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 410 GRAASPVEQIIIAQEFT--AGRVKRPQIAIATWIVPSIVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATK 487
Cdd:cd01156   58 GSGMGYLAHVIIMEEISraSGSVALSYGAHSNLCINQIYRNGSAAQKEKYLPKLISGEHIGALAMSEPNAGSDVVSMKLR 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 488 ATRVDGGWRITGQKIWTTGAQYSQWGALLARTDPSAPKHnGITYFLLDMKSEGVQVKPLRELTGKEFFNT--VYLDDVFV 565
Cdd:cd01156  138 AEKKGDRYVLNGSKMWITNGPDADTLVVYAKTDPSAGAH-GITAFIVEKGMPGFSRAQKLDKLGMRGSNTceLVFEDCEV 216
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 566 PDELVLGEVNRGWEVSRNTLTAERVSI-GGSDSTFLPTLGEFVDFVRDYRfegQFDQVARHRagQLIAEGHA---TKLLN 641
Cdd:cd01156  217 PEENILGGENKGVYVLMSGLDYERLVLaGGPIGIMQAALDVAIPYAHQRK---QFGQPIGEF--QLVQGKLAdmyTRLNA 291
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 642 LRSTLLTLAGG---DPMAP--AAISKLLSMRTGQGYAEFAVSSFGTDAVIGD--TERLpgkwgeyLLASRATTIYGGTSE 714
Cdd:cd01156  292 SRSYLYTVAKAcdrGNMDPkdAAGVILYAAEKATQVALDAIQILGGNGYINDypTGRL-------LRDAKLYEIGAGTSE 364
                        330
                 ....*....|
gi 801237228 715 VQLNIIAERL 724
Cdd:cd01156  365 IRRMVIGREL 374
PRK12341 PRK12341
acyl-CoA dehydrogenase;
444-725 2.39e-22

acyl-CoA dehydrogenase;


Pssm-ID: 183454 [Multi-domain]  Cd Length: 381  Bit Score: 99.80  E-value: 2.39e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 444 SIVAFGTDNQKQRLLPPTF-RGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALLARTDPS 522
Cdd:PRK12341  95 SMRRFGSAEQLRKTAESTLeTGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYLNGQKTFITGAKEYPYMLVLARDPQP 174
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 523 APKHNGITYFLLDMKSEGVQVKPLRELtGKEFFNT--VYLDDVFVPDELVLGEVNRGW-------EVSRntLTAERVSIG 593
Cdd:PRK12341 175 KDPKKAFTLWWVDSSKPGIKINPLHKI-GWHMLSTceVYLDNVEVEESDLVGEEGMGFlnvmynfEMER--LINAARSLG 251
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 594 GSDstflptlGEFVDFVRDYRFEGQFDQVARHRagQLIAEG---HATKLLNLRSTLLTLA----GGDPMA-PAAISKLLS 665
Cdd:PRK12341 252 FAE-------CAFEDAARYANQRIQFGKPIGHN--QLIQEKltlMAIKIENMRNMVYKVAwqadNGQSLRtSAALAKLYC 322
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 801237228 666 MRTGQGYAEFAVSSFGTdavIGDTE--RLPGKWGEyllaSRATTIYGGTSEVQLNIIAERLL 725
Cdd:PRK12341 323 ARTAMEVIDDAIQIMGG---LGYTDeaRVSRFWRD----VRCERIGGGTDEIMIYIAGRQIL 377
ACAD cd00567
Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal ...
7-335 4.64e-21

Acyl-CoA dehydrogenase; Both mitochondrial acyl-CoA dehydrogenases (ACAD) and peroxisomal acyl-CoA oxidases (AXO) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. In contrast, AXO catalyzes a different oxidative half-reaction, in which the reduced FAD is reoxidized by molecular oxygen. The ACAD family includes the eukaryotic beta-oxidation enzymes, short (SCAD), medium (MCAD), long (LCAD) and very-long (VLCAD) chain acyl-CoA dehydrogenases. These enzymes all share high sequence similarity, but differ in their substrate specificities. The ACAD family also includes amino acid catabolism enzymes such as Isovaleryl-CoA dehydrogenase (IVD), short/branched chain acyl-CoA dehydrogenases(SBCAD), Isobutyryl-CoA dehydrogenase (IBDH), glutaryl-CoA deydrogenase (GCD) and Crotonobetainyl-CoA dehydrogenase. The mitochondrial ACAD's are generally homotetramers, except for VLCAD, which is a homodimer. Related enzymes include the SOS adaptive reponse proten aidB, Naphthocyclinone hydroxylase (NcnH), and and Dibenzothiophene (DBT) desulfurization enzyme C (DszC)


Pssm-ID: 173838 [Multi-domain]  Cd Length: 327  Bit Score: 95.04  E-value: 4.64e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228   7 PEHYELADSVRSLVARVAPSEVLHAAlespvENPPPYWQAAAEQGLQGVHLAesvggqgfgilelavvLAEFGYGAVpgp 86
Cdd:cd00567    1 EEQRELRDSAREFAAEELEPYARERR-----ETPEEPWELLAELGLLLGAAL----------------LLAYGTEEQ--- 56
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  87 fvpsaiasaliaahdpQAKVLAELATGAAIAAYAL---DSG-------LTATRHGDVLVIRGEVRAVPAAAQASV-LVLP 155
Cdd:cd00567   57 ----------------KERYLPPLASGEAIAAFALtepGAGsdlagirTTARKDGDGYVLNGRKIFISNGGDADLfIVLA 120
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 156 VAIESRDEW-------VVLRNDQLEIEAVKSLDPLR--PIAHVRANAVDVSDDALL------SNLTMTTAhALMSTLLSA 220
Cdd:cd00567  121 RTDEEGPGHrgisaflVPADTPGVTVGRIWDKMGMRgsGTGELVFDDVRVPEDNLLgeegggFELAMKGL-NVGRLLLAA 199
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 221 EAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAgesSSDVEFAAAVAATLAP 300
Cdd:cd00567  200 VALGAARAALDEAVEYAKQRKQFGKPLAEFQAVQFKLADMAAELEAARLLLYRAAWLLDQG---PDEARLEAAMAKLFAT 276
                        330       340       350
                 ....*....|....*....|....*....|....*
gi 801237228 301 ATAQRCTQDCIQVHGGIGFTWEHDTNVYYRRALML 335
Cdd:cd00567  277 EAAREVADLAMQIHGGRGYSREYPVERYLRDARAA 311
Acyl-CoA_dh_1 pfam00441
Acyl-CoA dehydrogenase, C-terminal domain; C-terminal domain of Acyl-CoA dehydrogenase is an ...
217-335 5.93e-20

Acyl-CoA dehydrogenase, C-terminal domain; C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.


Pssm-ID: 395354 [Multi-domain]  Cd Length: 149  Bit Score: 86.92  E-value: 5.93e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  217 LLSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAGESSSDVefaaAVAA 296
Cdd:pfam00441  17 AIAAMALGLARRALDEALAYARRRKAFGRPLIDFQLVRHKLAEMAAEIEAARLLVYRAAEALDAGGPDGAEA----SMAK 92
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 801237228  297 TLAPATAQRCTQDCIQVHGGIGFTWEHDTNVYYRRALML 335
Cdd:pfam00441  93 LYASEAAVEVADLAMQLHGGYGYLREYPVERLYRDARVL 131
SCAD_SBCAD cd01158
Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA ...
214-332 1.05e-19

Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases; Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.


Pssm-ID: 173847 [Multi-domain]  Cd Length: 373  Bit Score: 91.56  E-value: 1.05e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 214 MSTL------LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARaLDDAGES--- 284
Cdd:cd01158  230 MQTLdggrigIAAQALGIAQAALDAAVDYAKERKQFGKPIADFQGIQFKLADMATEIEAARLLTYKAAR-LKDNGEPfik 308
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 801237228 285 --------SSDVefaaavaatlapatAQRCTQDCIQVHGGIGFTWEHDTNVYYRRA 332
Cdd:cd01158  309 eaamaklfASEV--------------AMRVTTDAVQIFGGYGYTKDYPVERYYRDA 350
VLCAD cd01161
Very long chain acyl-CoA dehydrogenase; VLCAD is an acyl-CoA dehydrogenase (ACAD), which is ...
445-595 2.84e-19

Very long chain acyl-CoA dehydrogenase; VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.


Pssm-ID: 173850 [Multi-domain]  Cd Length: 409  Bit Score: 90.99  E-value: 2.84e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 445 IVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGG--WRITGQKIWTTGAQYSQWGALLART--- 519
Cdd:cd01161  117 ILLFGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGkhYVLNGSKIWITNGGIADIFTVFAKTevk 196
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 801237228 520 DPSAPKHNGITYFLLDMKSEGVQVKPLRELTGKEFFNT--VYLDDVFVPDELVLGEVNRGWEVSRNTLTAERVSIGGS 595
Cdd:cd01161  197 DATGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTaeVYFEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAA 274
GCD cd01151
Glutaryl-CoA dehydrogenase; Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, ...
401-575 9.08e-19

Glutaryl-CoA dehydrogenase; Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.


Pssm-ID: 173840 [Multi-domain]  Cd Length: 386  Bit Score: 88.95  E-value: 9.08e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 401 VLPYLPKPWGRA-ASPVEQIIIAQEftagrVKRPQIAIATWI-VPS------IVAFGTDNQKQRLLPPTFRGDIFWCQLF 472
Cdd:cd01151   58 LLGATIKGYGCAgLSSVAYGLIARE-----VERVDSGYRSFMsVQSslvmlpIYDFGSEEQKQKYLPKLASGELIGCFGL 132
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 473 SEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALLARTDPSapkhNGITYFLLDMKSEGVQVKplrELTGK 552
Cdd:cd01151  133 TEPNHGSDPGGMETRARKDGGGYKLNGSKTWITNSPIADVFVVWARNDET----GKIRGFILERGMKGLSAP---KIQGK 205
                        170       180
                 ....*....|....*....|....*...
gi 801237228 553 EFF-----NTVYLDDVFVPDELVLGEVN 575
Cdd:cd01151  206 FSLrasitGEIVMDNVFVPEENLLPGAE 233
Acyl-CoA_dh_M pfam02770
Acyl-CoA dehydrogenase, middle domain; Central domain of Acyl-CoA dehydrogenase has a ...
469-551 1.79e-18

Acyl-CoA dehydrogenase, middle domain; Central domain of Acyl-CoA dehydrogenase has a beta-barrel fold.


Pssm-ID: 460685 [Multi-domain]  Cd Length: 95  Bit Score: 80.79  E-value: 1.79e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  469 CQLFSEPGAGSDLASLATKA-TRVDGGWRITGQKIWTTGAQYSQWGALLARTDPsAPKHNGITYFLLDMKSEGVQVKPLR 547
Cdd:pfam02770   1 AFALTEPGAGSDVASLKTTAaDGDGGGWVLNGTKWWITNAGIADLFLVLARTGG-DDRHGGISLFLVPKDAPGVSVRRIE 79

                  ....
gi 801237228  548 ELTG 551
Cdd:pfam02770  80 TKLG 83
PLN02519 PLN02519
isovaleryl-CoA dehydrogenase
442-590 9.42e-18

isovaleryl-CoA dehydrogenase


Pssm-ID: 215284 [Multi-domain]  Cd Length: 404  Bit Score: 86.08  E-value: 9.42e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 442 VPSIVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALLARTDP 521
Cdd:PLN02519 118 INQLVRNGTPAQKEKYLPKLISGEHVGALAMSEPNSGSDVVSMKCKAERVDGGYVLNGNKMWCTNGPVAQTLVVYAKTDV 197
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 801237228 522 SAPKHnGITYFLLDMKSEGVQVKPLRELTGKEFFNTVYL--DDVFVPDELVLGEVNRGWEVSRNTLTAERV 590
Cdd:PLN02519 198 AAGSK-GITAFIIEKGMPGFSTAQKLDKLGMRGSDTCELvfENCFVPEENVLGQEGKGVYVMMSGLDLERL 267
MCAD cd01157
Medium chain acyl-CoA dehydrogenase; MCADs are mitochondrial beta-oxidation enzymes, which ...
441-726 1.07e-17

Medium chain acyl-CoA dehydrogenase; MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.


Pssm-ID: 173846 [Multi-domain]  Cd Length: 378  Bit Score: 85.72  E-value: 1.07e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 441 IVPSIVAfGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALLARTD 520
Cdd:cd01157   90 QMPVIIS-GNDEQKKKYLGRMTEEPLMCAYCVTEPGAGSDVAGIKTKAEKKGDEYIINGQKMWITNGGKANWYFLLARSD 168
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 521 --PSAPKHNGITYFLLDMKSEGVQVKPLRELTGKEFFNT--VYLDDVFVPDELVLGEVNRGWEVSRNTLTAERVSI-GGS 595
Cdd:cd01157  169 pdPKCPASKAFTGFIVEADTPGIQPGRKELNMGQRCSDTrgITFEDVRVPKENVLIGEGAGFKIAMGAFDKTRPPVaAGA 248
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 596 DSTFLPTLGEFVDFVRDYRFEGQFdqVARHRAGQLIAEGHATK-----LLNLRSTLLTLAGGDPMAPAAISKLLSMRTGQ 670
Cdd:cd01157  249 VGLAQRALDEATKYALERKTFGKL--IAEHQAVSFMLADMAMKvelarLAYQRAAWEVDSGRRNTYYASIAKAFAADIAN 326
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 801237228 671 GYAEFAVSSFGTDAVIGD--TERLpgkwgeyLLASRATTIYGGTSEVQLNIIAERLLG 726
Cdd:cd01157  327 QLATDAVQIFGGNGFNSEypVEKL-------MRDAKIYQIYEGTSQIQRLIISREHLG 377
IBD cd01162
Isobutyryl-CoA dehydrogenase; Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- ...
437-726 5.88e-17

Isobutyryl-CoA dehydrogenase; Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.


Pssm-ID: 173851 [Multi-domain]  Cd Length: 375  Bit Score: 83.26  E-value: 5.88e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 437 IATWIVPSivaFGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALL 516
Cdd:cd01162   88 MCAWMIDS---FGNDEQRERFLPDLCTMEKLASYCLTEPGSGSDAAALRTRAVREGDHYVLNGSKAFISGAGDSDVYVVM 164
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 517 ARTDPSAPKhnGITYFLLDMKSEGV-----------QVKPLReltgkeffnTVYLDDVFVPDELVLGEVNRGWEVSRNTL 585
Cdd:cd01162  165 ARTGGEGPK--GISCFVVEKGTPGLsfganekkmgwNAQPTR---------AVIFEDCRVPVENRLGGEGQGFGIAMAGL 233
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 586 TAERVSI-----GGSDSTFLPTLgefvDFVRDYRfegQFDQ-VARHRAGQLIAEGHATKL----LNLRSTLLTLAGGDPM 655
Cdd:cd01162  234 NGGRLNIascslGAAQAALDLAR----AYLEERK---QFGKpLADFQALQFKLADMATELvasrLMVRRAASALDRGDPD 306
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 656 ApaaiSKLLSMrtgqgyaefaVSSFGTD---AVIGDTERLPGKWG--------EYLLASRATTIYGGTSEVQLNIIAERL 724
Cdd:cd01162  307 A----VKLCAM----------AKRFATDecfDVANQALQLHGGYGylkdypveQYVRDLRVHQILEGTNEIMRLIIARAL 372

                 ..
gi 801237228 725 LG 726
Cdd:cd01162  373 LT 374
LCAD cd01160
Long chain acyl-CoA dehydrogenase; LCAD is an acyl-CoA dehydrogenases (ACAD), which is found ...
7-332 2.02e-16

Long chain acyl-CoA dehydrogenase; LCAD is an acyl-CoA dehydrogenases (ACAD), which is found in the mitochondria of eukaryotes and in some prokaryotes. It catalyzes the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of LCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. LCAD acts as a homodimer.


Pssm-ID: 173849 [Multi-domain]  Cd Length: 372  Bit Score: 81.78  E-value: 2.02e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228   7 PEHYELADSVRSLVAR-VAPsevLHAALESPVENPPPYWQAAAEQGLQGVHLAESVGGQGFGILELAVVLAEFGY--GAV 83
Cdd:cd01160    1 EEHDAFRDVVRRFFAKeVAP---FHHEWEKAGEVPREVWRKAGEQGLLGVGFPEEYGGIGGDLLSAAVLWEELARagGSG 77
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  84 PG---------PFVPSAIASALIAAHDPQ---AKVLAELATGAAIAAYALDSGLT-ATRHGDVLVIRGEVRAVPAAAQAS 150
Cdd:cd01160   78 PGlslhtdivsPYITRAGSPEQKERVLPQmvaGKKIGAIAMTEPGAGSDLQGIRTtARKDGDHYVLNGSKTFITNGMLAD 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 151 VLVLpVAIESRDEWVVLRNDQLEIE-AVKSLDPLRPIAHVRANAVDVS----DDALL--SNLTMTTAHA---LMSTL--- 217
Cdd:cd01160  158 VVIV-VARTGGEARGAGGISLFLVErGTPGFSRGRKLKKMGWKAQDTAelffDDCRVpaENLLGEENKGfyyLMQNLpqe 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 218 ---LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTErATAAVWDAARALDDAGESSSDvefAAAV 294
Cdd:cd01160  237 rllIAAGALAAAEFMLEETRNYVKQRKAFGKTLAQLQVVRHKIAELATKVA-VTRAFLDNCAWRHEQGRLDVA---EASM 312
                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 801237228 295 AATLAPATAQRCTQDCIQVHGGIGFTWEHDTNVYYRRA 332
Cdd:cd01160  313 AKYWATELQNRVAYECVQLHGGWGYMREYPIARAYRDA 350
Acyl-CoA_dh_1 pfam00441
Acyl-CoA dehydrogenase, C-terminal domain; C-terminal domain of Acyl-CoA dehydrogenase is an ...
575-724 1.62e-15

Acyl-CoA dehydrogenase, C-terminal domain; C-terminal domain of Acyl-CoA dehydrogenase is an all-alpha, four helical up-and-down bundle.


Pssm-ID: 395354 [Multi-domain]  Cd Length: 149  Bit Score: 74.21  E-value: 1.62e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  575 NRGWEVSRNTLTAERVSIG-GSDSTFLPTLGEFVDFVRDYRFEGQF---DQVARHRAGQLIAEGHATKLLNLRSTLLTLA 650
Cdd:pfam00441   1 GRGFRVAMETLNHERLAIAaMALGLARRALDEALAYARRRKAFGRPlidFQLVRHKLAEMAAEIEAARLLVYRAAEALDA 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 801237228  651 GGDPMAPAAISKLLSMRTGQGYAEFAVSSFGTDAVIGDterlpGKWGEYLLASRATTIYGGTSEVQLNIIAERL 724
Cdd:pfam00441  81 GGPDGAEASMAKLYASEAAVEVADLAMQLHGGYGYLRE-----YPVERLYRDARVLRIGEGTSEIQRNIIARRL 149
PLN02526 PLN02526
acyl-coenzyme A oxidase
365-575 6.44e-15

acyl-coenzyme A oxidase


Pssm-ID: 178141 [Multi-domain]  Cd Length: 412  Bit Score: 77.59  E-value: 6.44e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 365 LDPSTEKLRAQIRaevaalKAMPREprtvaiaeggwVLPYLPKPWGRAASPVEQI----------------------IIA 422
Cdd:PLN02526  29 LTPEEQALRKRVR------ECMEKE-----------VAPIMTEYWEKAEFPFHIIpklgslgiaggtikgygcpglsITA 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 423 QEFTAGRVKRPQIAIATWI-VPSIVAF------GTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGW 495
Cdd:PLN02526  92 SAIATAEVARVDASCSTFIlVHSSLAMltialcGSEAQKQKYLPSLAQLDTVACWALTEPDYGSDASSLNTTATKVEGGW 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 496 RITGQKIWTTGAQYSQWGALLARTDPSapkhNGITYFLLDMKSEGVQVKPLRELTGKEFFNT--VYLDDVFVPDELVLGE 573
Cdd:PLN02526 172 ILNGQKRWIGNSTFADVLVIFARNTTT----NQINGFIVKKGAPGLKATKIENKIGLRMVQNgdIVLKDVFVPDEDRLPG 247

                 ..
gi 801237228 574 VN 575
Cdd:PLN02526 248 VN 249
PRK03354 PRK03354
crotonobetainyl-CoA dehydrogenase; Validated
449-717 2.30e-13

crotonobetainyl-CoA dehydrogenase; Validated


Pssm-ID: 179566 [Multi-domain]  Cd Length: 380  Bit Score: 72.56  E-value: 2.30e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 449 GTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGALLARtDPSAPKHNG 528
Cdd:PRK03354 101 GTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKVYLNGSKCFITSSAYTPYIVVMAR-DGASPDKPV 179
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 529 ITYFLLDMKSEGVQVKPLRELTGK-EFFNTVYLDDVFVPDELVLGEVNRGWEVSRNTLTAERVSIGGSDstFLPTLGEFV 607
Cdd:PRK03354 180 YTEWFVDMSKPGIKVTKLEKLGLRmDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTN--YGTAMCAFE 257
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 608 DFVRDYRFEGQF-DQVARHRAGQLIAEGHATKLLNLRSTLLTLA---GGDPMAP--AAISKLLSMRTGQGYAEFAVSSFG 681
Cdd:PRK03354 258 DAARYANQRVQFgEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAwkaDNGTITSgdAAMCKYFCANAAFEVVDSAMQVLG 337
                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 801237228 682 TDAVIGDtERLPGKWGEYllasRATTIYGGTSEVQL 717
Cdd:PRK03354 338 GVGIAGN-HRISRFWRDL----RVDRVSGGSDEMQI 368
ACAD_fadE5 cd01153
Putative acyl-CoA dehydrogenases similar to fadE5; Putative acyl-CoA dehydrogenase (ACAD). ...
394-593 1.21e-12

Putative acyl-CoA dehydrogenases similar to fadE5; Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.


Pssm-ID: 173842 [Multi-domain]  Cd Length: 407  Bit Score: 70.50  E-value: 1.21e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 394 AIAEGGWVLPYLPKPWGRAASP-VEQIIIAQEFTAGRVKRPQIAIATWIVPSIVAFGTDNQKQRLLPPTFRGDIFWCQLF 472
Cdd:cd01153   44 AFAEAGWMALGVPEEYGGQGLPiTVYSALAEIFSRGDAPLMYASGTQGAAATLLAHGTEAQREKWIPRLAEGEWTGTMCL 123
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 473 SEPGAGSDLASLATKAT-RVDGGWRITGQKIWTTGAQYSQWGA----LLARTDPSAPKHNGITYFL-----LDMKSEGVQ 542
Cdd:cd01153  124 TEPDAGSDLGALRTKAVyQADGSWRINGVKRFISAGEHDMSENivhlVLARSEGAPPGVKGLSLFLvpkflDDGERNGVT 203
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 801237228 543 VKPLRELTGKEFFNTVYLddVFvpDE---LVLGEVNRGWEVSRNTLTAERVSIG 593
Cdd:cd01153  204 VARIEEKMGLHGSPTCEL--VF--DNakgELIGEEGMGLAQMFAMMNGARLGVG 253
PRK12341 PRK12341
acyl-CoA dehydrogenase;
1-323 5.46e-12

acyl-CoA dehydrogenase;


Pssm-ID: 183454 [Multi-domain]  Cd Length: 381  Bit Score: 68.22  E-value: 5.46e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228   1 MSIAITPEHYELADSVRSLVARVAPSEVLHAALESPVeNPPPYWQAAAEQGLQGVHLAESVGGQGFGILELAVVLAEFGY 80
Cdd:PRK12341   1 MDFSLTEEQELLLASIRELITRNFPEEYFRTCDENGT-YPREFMRALADNGISMLGVPEEFGGTPADYVTQMLVLEEVSK 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  81 GAVPGPFVPSAIASALIAAH--DPQAKVLAELATGAAIAAYAL----------DSGLTAT---RHGDVlVIRGEVRAVPA 145
Cdd:PRK12341  80 CGAPAFLITNGQCIHSMRRFgsAEQLRKTAESTLETGDPAYALaltepgagsdNNSATTTytrKNGKV-YLNGQKTFITG 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 146 AAQAS-VLVLPVAIESRDE------WVVLRNDQleieAVKsLDPLRPIA-HVRANA------VDVSDDALLSNLTMTTAH 211
Cdd:PRK12341 159 AKEYPyMLVLARDPQPKDPkkaftlWWVDSSKP----GIK-INPLHKIGwHMLSTCevyldnVEVEESDLVGEEGMGFLN 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 212 AL----MSTLL-SAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDaGESss 286
Cdd:PRK12341 234 VMynfeMERLInAARSLGFAECAFEDAARYANQRIQFGKPIGHNQLIQEKLTLMAIKIENMRNMVYKVAWQADN-GQS-- 310
                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 801237228 287 dVEFAAAVAATLAPATAQRCTQDCIQVHGGIGFTWEH 323
Cdd:PRK12341 311 -LRTSAALAKLYCARTAMEVIDDAIQIMGGLGYTDEA 346
IVD cd01156
Isovaleryl-CoA dehydrogenase; Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA ...
213-332 1.46e-11

Isovaleryl-CoA dehydrogenase; Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.


Pssm-ID: 173845 [Multi-domain]  Cd Length: 376  Bit Score: 66.67  E-value: 1.46e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 213 LMSTL------LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAGESSS 286
Cdd:cd01156  232 LMSGLdyerlvLAGGPIGIMQAALDVAIPYAHQRKQFGQPIGEFQLVQGKLADMYTRLNASRSYLYTVAKACDRGNMDPK 311
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 801237228 287 DVefaaavaATLAPATAQRCTQ---DCIQVHGGIGFTWEHDTNVYYRRA 332
Cdd:cd01156  312 DA-------AGVILYAAEKATQvalDAIQILGGNGYINDYPTGRLLRDA 353
ACAD_FadE2 cd01155
Acyl-CoA dehydrogenases similar to fadE2; FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA ...
383-726 1.36e-10

Acyl-CoA dehydrogenases similar to fadE2; FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACAD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. ACAD's are generally homotetramers and have an active site glutamate at a conserved position.


Pssm-ID: 173844 [Multi-domain]  Cd Length: 394  Bit Score: 63.95  E-value: 1.36e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 383 LKAMPReprtvaiAEGGWVLpYLPK-PWGRAASPVEQIIIAqEFTAGRVKRPQI----AIATWIVPSIVAFGTDNQKQRL 457
Cdd:cd01155   46 LKAKAK-------AEGLWNL-FLPEvSGLSGLTNLEYAYLA-EETGRSFFAPEVfncqAPDTGNMEVLHRYGSEEQKKQW 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 458 LPPTFRGDIFWCQLFSEPG-AGSDLASLATKATRVDGGWRITGQKIWTTGAQYSQWGAL--LARTDP-SAPKHNGITYFL 533
Cdd:cd01155  117 LEPLLDGKIRSAFAMTEPDvASSDATNIECSIERDGDDYVINGRKWWSSGAGDPRCKIAivMGRTDPdGAPRHRQQSMIL 196
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 534 LDMKSEGVQVkpLRELT--------GKEFfnTVYLDDVFVPDELVLGEVNRGWEVSRNTLTAERV-----SIGGSD---- 596
Cdd:cd01155  197 VPMDTPGVTI--IRPLSvfgyddapHGHA--EITFDNVRVPASNLILGEGRGFEIAQGRLGPGRIhhcmrLIGAAErale 272
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 597 -----STFLPTLGEFVdfvrdYRFEGQFDQVARHRagqliAEGHATKLLNLRSTLLTLAGGDPMAPAAIS--KLLSMRTG 669
Cdd:cd01155  273 lmcqrAVSREAFGKKL-----AQHGVVAHWIAKSR-----IEIEQARLLVLKAAHMIDTVGNKAARKEIAmiKVAAPRMA 342
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 801237228 670 QGYAEFAVSSFGTDAVIGDTErLPGKWGeyllASRATTIYGGTSEVQLNIIAERLLG 726
Cdd:cd01155  343 LKIIDRAIQVHGAAGVSQDTP-LANMYA----WARTLRIADGPDEVHLRSIARMELK 394
GCD cd01151
Glutaryl-CoA dehydrogenase; Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, ...
126-287 1.04e-09

Glutaryl-CoA dehydrogenase; Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.


Pssm-ID: 173840 [Multi-domain]  Cd Length: 386  Bit Score: 61.22  E-value: 1.04e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 126 TATRHGDVLVIRGEVRAVPAAAQASVLVLPVAIESRDE---WVVLRN-DQLEIEAVKSLDPLR--PIAHVRANAVDVSDD 199
Cdd:cd01151  147 RARKDGGGYKLNGSKTWITNSPIADVFVVWARNDETGKirgFILERGmKGLSAPKIQGKFSLRasITGEIVMDNVFVPEE 226
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 200 ALLSNLTMTTAHalMSTLLSAE------AVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWD 273
Cdd:cd01151  227 NLLPGAEGLRGP--FKCLNNARygiawgALGAAEDCYHTARQYVLDRKQFGRPLAAFQLVQKKLADMLTEIALGLLACLR 304
                        170
                 ....*....|....
gi 801237228 274 AARaLDDAGESSSD 287
Cdd:cd01151  305 VGR-LKDQGKATPE 317
Acyl-CoA_dh_N pfam02771
Acyl-CoA dehydrogenase, N-terminal domain; The N-terminal domain of Acyl-CoA dehydrogenase is ...
6-81 1.45e-09

Acyl-CoA dehydrogenase, N-terminal domain; The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain.


Pssm-ID: 460686 [Multi-domain]  Cd Length: 113  Bit Score: 55.93  E-value: 1.45e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 801237228    6 TPEHYELADSVRSLVAR-VAPsevLHAALESPVENPPPYWQAAAEQGLQGVHLAESVGGQGFGILELAVVLAEFGYG 81
Cdd:pfam02771   1 TEEQEALRDTVREFAEEeIAP---HAAEWDEEGEFPRELWKKLGELGLLGITIPEEYGGAGLDYLAYALVAEELARA 74
IBD cd01162
Isobutyryl-CoA dehydrogenase; Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- ...
218-319 4.71e-09

Isobutyryl-CoA dehydrogenase; Isobutyryl-CoA dehydrogenase (IBD) catalyzes the alpha, beta- dehydrogenation of short branched chain acyl-CoA intermediates in valine catabolism. It is predicted to be a homotetramer.


Pssm-ID: 173851 [Multi-domain]  Cd Length: 375  Bit Score: 58.99  E-value: 4.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 218 LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDagESSSDVEFAAAVAAT 297
Cdd:cd01162  240 IASCSLGAAQAALDLARAYLEERKQFGKPLADFQALQFKLADMATELVASRLMVRRAASALDR--GDPDAVKLCAMAKRF 317
                         90       100
                 ....*....|....*....|..
gi 801237228 298 LAPATAQRCTQdCIQVHGGIGF 319
Cdd:cd01162  318 ATDECFDVANQ-ALQLHGGYGY 338
PLN02519 PLN02519
isovaleryl-CoA dehydrogenase
211-332 9.13e-09

isovaleryl-CoA dehydrogenase


Pssm-ID: 215284 [Multi-domain]  Cd Length: 404  Bit Score: 58.35  E-value: 9.13e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 211 HALMSTL------LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAGES 284
Cdd:PLN02519 256 YVMMSGLdlerlvLAAGPLGLMQACLDVVLPYVRQREQFGRPIGEFQFIQGKLADMYTSLQSSRSYVYSVARDCDNGKVD 335
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 801237228 285 SSDVefaaavaATLAPATAQRCTQ---DCIQVHGGIGFTWEHDTNVYYRRA 332
Cdd:PLN02519 336 RKDC-------AGVILCAAERATQvalQAIQCLGGNGYINEYPTGRLLRDA 379
PTZ00456 PTZ00456
acyl-CoA dehydrogenase; Provisional
394-534 1.50e-08

acyl-CoA dehydrogenase; Provisional


Pssm-ID: 185635 [Multi-domain]  Cd Length: 622  Bit Score: 57.96  E-value: 1.50e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 394 AIAEGGWVLPYLPKPWGRAASPveqiiiaqeFTAGRVKRPQIAIATW-----------IVPSIVAFGTDNQKQRLLPPTF 462
Cdd:PTZ00456 107 ALKAGGWTGISEPEEYGGQALP---------LSVGFITRELMATANWgfsmypglsigAANTLMAWGSEEQKEQYLTKLV 177
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 801237228 463 RGDIFWCQLFSEPGAGSDLASLATKATRV-DGGWRITGQKIWTTGAQYSQWG----ALLARTDPSAPKHNGITYFLL 534
Cdd:PTZ00456 178 SGEWSGTMCLTEPQCGTDLGQVKTKAEPSaDGSYKITGTKIFISAGDHDLTEnivhIVLARLPNSLPTTKGLSLFLV 254
PTZ00461 PTZ00461
isovaleryl-CoA dehydrogenase; Provisional
450-592 1.88e-08

isovaleryl-CoA dehydrogenase; Provisional


Pssm-ID: 185640 [Multi-domain]  Cd Length: 410  Bit Score: 57.25  E-value: 1.88e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 450 TDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKATRV-DGGWRITGQKIWTTGAQYSQWGALLARTDpsapkhNG 528
Cdd:PTZ00461 135 SPAQRARWLPKVLTGEHVGAMGMSEPGAGTDVLGMRTTAKKDsNGNYVLNGSKIWITNGTVADVFLIYAKVD------GK 208
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 801237228 529 ITYFLLDMKSEGVQVKPLRELTG--KEFFNTVYLDDVFVPDELVLGEVNRGW-------EVSRNTLTAERVSI 592
Cdd:PTZ00461 209 ITAFVVERGTKGFTQGPKIDKCGmrASHMCQLFFEDVVVPAENLLGEEGKGMvgmmrnlELERVTLAAMAVGI 281
PTZ00461 PTZ00461
isovaleryl-CoA dehydrogenase; Provisional
218-335 1.42e-07

isovaleryl-CoA dehydrogenase; Provisional


Pssm-ID: 185640 [Multi-domain]  Cd Length: 410  Bit Score: 54.56  E-value: 1.42e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 218 LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARAL--DDAGESSSDvefaaaVA 295
Cdd:PTZ00461 274 LAAMAVGIAERSVELMTSYASERKAFGKPISNFGQIQRYIAEGYADTEAAKALVYSVSHNVhpGNKNRLGSD------AA 347
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 801237228 296 ATLAPATAQRCTQDCIQVHGGIGFTWEHDTNVYYRRALML 335
Cdd:PTZ00461 348 KLFATPIAKKVADSAIQVMGGMGYSRDMPVERLWRDAKLL 387
fadE PRK09463
acyl-CoA dehydrogenase; Reviewed
213-279 2.41e-07

acyl-CoA dehydrogenase; Reviewed


Pssm-ID: 236528 [Multi-domain]  Cd Length: 777  Bit Score: 54.44  E-value: 2.41e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 801237228 213 LMSTL-------LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALD 279
Cdd:PRK09463 325 LMECLsvgrgisLPSNSTGGAKLAALATGAYARIRRQFKLPIGKFEGIEEPLARIAGNAYLMDAARTLTTAAVD 398
PLN02876 PLN02876
acyl-CoA dehydrogenase
445-590 3.28e-07

acyl-CoA dehydrogenase


Pssm-ID: 215473 [Multi-domain]  Cd Length: 822  Bit Score: 54.03  E-value: 3.28e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 445 IVAFGTDNQKQRLLPPTFRGDIFWCQLFSEPG-AGSDLASLATKATRVDGGWRITGQKIWTTGAQ--YSQWGALLARTDP 521
Cdd:PLN02876 529 LLRYGNKEQQLEWLIPLLEGKIRSGFAMTEPQvASSDATNIECSIRRQGDSYVINGTKWWTSGAMdpRCRVLIVMGKTDF 608
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 801237228 522 SAPKHNGITYFLLDMKSEGVQVKplRELTGKEFFNT------VYLDDVFVP-DELVLGEvNRGWEVSRNTLTAERV 590
Cdd:PLN02876 609 NAPKHKQQSMILVDIQTPGVQIK--RPLLVFGFDDAphghaeISFENVRVPaKNILLGE-GRGFEIAQGRLGPGRL 681
VLCAD cd01161
Very long chain acyl-CoA dehydrogenase; VLCAD is an acyl-CoA dehydrogenase (ACAD), which is ...
218-330 1.33e-06

Very long chain acyl-CoA dehydrogenase; VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer.


Pssm-ID: 173850 [Multi-domain]  Cd Length: 409  Bit Score: 51.31  E-value: 1.33e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 218 LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAGESSSDVEfaAAVAAT 297
Cdd:cd01161  271 MGAALIGTMKRCIEKAVDYANNRKQFGKKIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIE--AAISKV 348
                         90       100       110
                 ....*....|....*....|....*....|...
gi 801237228 298 LAPATAQRCTQDCIQVHGGIGFTWEHDTNVYYR 330
Cdd:cd01161  349 FASEAAWLVVDEAIQIHGGMGFMREYGVERVLR 381
MCAD cd01157
Medium chain acyl-CoA dehydrogenase; MCADs are mitochondrial beta-oxidation enzymes, which ...
218-332 2.27e-06

Medium chain acyl-CoA dehydrogenase; MCADs are mitochondrial beta-oxidation enzymes, which catalyze the alpha,beta dehydrogenation of the corresponding medium chain acyl-CoA by FAD, which becomes reduced. The reduced form of MCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. MCAD is a homotetramer.


Pssm-ID: 173846 [Multi-domain]  Cd Length: 378  Bit Score: 50.66  E-value: 2.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 218 LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAGESSsdveFAAAVAAT 297
Cdd:cd01157  244 VAAGAVGLAQRALDEATKYALERKTFGKLIAEHQAVSFMLADMAMKVELARLAYQRAAWEVDSGRRNT----YYASIAKA 319
                         90       100       110
                 ....*....|....*....|....*....|....*
gi 801237228 298 LAPATAQRCTQDCIQVHGGIGFTWEHDTNVYYRRA 332
Cdd:cd01157  320 FAADIANQLATDAVQIFGGNGFNSEYPVEKLMRDA 354
PRK03354 PRK03354
crotonobetainyl-CoA dehydrogenase; Validated
224-330 2.38e-06

crotonobetainyl-CoA dehydrogenase; Validated


Pssm-ID: 179566 [Multi-domain]  Cd Length: 380  Bit Score: 50.60  E-value: 2.38e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 224 GVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAGESSSDVEFAAAVAATLAPata 303
Cdd:PRK03354 250 GTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAF--- 326
                         90       100
                 ....*....|....*....|....*..
gi 801237228 304 qRCTQDCIQVHGGIGFTWEHDTNVYYR 330
Cdd:PRK03354 327 -EVVDSAMQVLGGVGIAGNHRISRFWR 352
AidB cd01154
Proteins involved in DNA damage response, similar to the AidB gene product; AidB is one of ...
222-336 3.19e-06

Proteins involved in DNA damage response, similar to the AidB gene product; AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.


Pssm-ID: 173843 [Multi-domain]  Cd Length: 418  Bit Score: 50.06  E-value: 3.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 222 AVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADTERATAAVWDAARALDDAGESSSD----VEFAAAVAAT 297
Cdd:cd01154  281 ALGIMRRALSEAYHYARHRRAFGKPLIDHPLMRRDLAEMEVDVEAATALTFRAARAFDRAAADKPVeahmARLATPVAKL 360
                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 801237228 298 LAPATAQRCTQDCIQVHGGIGFTWEHDTNVYYRRALMLA 336
Cdd:cd01154  361 IACKRAAPVTSEAMEVFGGNGYLEEWPVARLHREAQVTP 399
PRK13026 PRK13026
acyl-CoA dehydrogenase; Reviewed
218-264 6.58e-06

acyl-CoA dehydrogenase; Reviewed


Pssm-ID: 237277 [Multi-domain]  Cd Length: 774  Bit Score: 49.57  E-value: 6.58e-06
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 801237228 218 LSAEAVGVARWATDTASAYAKIREQFGRPIGQFQAIKHKCAEMIADT 264
Cdd:PRK13026 336 LPALGTASGHMATRTTGAYAYVRRQFGMPIGQFEGVQEALARIAGNT 382
Acyl-CoA_dh_N pfam02771
Acyl-CoA dehydrogenase, N-terminal domain; The N-terminal domain of Acyl-CoA dehydrogenase is ...
374-465 1.89e-05

Acyl-CoA dehydrogenase, N-terminal domain; The N-terminal domain of Acyl-CoA dehydrogenase is an all-alpha domain.


Pssm-ID: 460686 [Multi-domain]  Cd Length: 113  Bit Score: 44.38  E-value: 1.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228  374 AQIRAEVAALKAMPREPRTvAIAEGGWVLPYLPKPW-GRAASPVEQIIIAQEFTAGRV-KRPQIAIATWIV-PSIVAFGT 450
Cdd:pfam02771  20 APHAAEWDEEGEFPRELWK-KLGELGLLGITIPEEYgGAGLDYLAYALVAEELARADAsVALALSVHSSLGaPPILRFGT 98
                          90
                  ....*....|....*
gi 801237228  451 DNQKQRLLPPTFRGD 465
Cdd:pfam02771  99 EEQKERYLPKLASGE 113
AidB cd01154
Proteins involved in DNA damage response, similar to the AidB gene product; AidB is one of ...
442-534 1.13e-04

Proteins involved in DNA damage response, similar to the AidB gene product; AidB is one of several genes involved in the SOS adaptive response to DNA alkylation damage, whose expression is activated by the Ada protein. Its function has not been entirely elucidated; however, it is similar in sequence and function to acyl-CoA dehydrogenases. It has been proposed that aidB directly destroys DNA alkylating agents such as nitrosoguanidines (nitrosated amides) or their reaction intermediates.


Pssm-ID: 173843 [Multi-domain]  Cd Length: 418  Bit Score: 45.05  E-value: 1.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 442 VPSIVAFGTDNQKQRLLPPT---FRGDIFWCQLFSEPGAGSDLASLATKATRVDGG-WRITGQKiWTTGAQYSQWGALLA 517
Cdd:cd01154  120 VYALRKYGPEELKQYLPGLLsdrYKTGLLGGTWMTEKQGGSDLGANETTAERSGGGvYRLNGHK-WFASAPLADAALVLA 198
                         90
                 ....*....|....*..
gi 801237228 518 RTDPSAPKHNGITYFLL 534
Cdd:cd01154  199 RPEGAPAGARGLSLFLV 215
ACAD_fadE5 cd01153
Putative acyl-CoA dehydrogenases similar to fadE5; Putative acyl-CoA dehydrogenase (ACAD). ...
220-332 1.14e-04

Putative acyl-CoA dehydrogenases similar to fadE5; Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.


Pssm-ID: 173842 [Multi-domain]  Cd Length: 407  Bit Score: 45.07  E-value: 1.14e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 220 AEAVGVARWATDTASAYAKIREQFGRPIGQFQA---IKHK-------CAEMIADTERA----TAAVWDAARALDDAGESS 285
Cdd:cd01153  254 TQGTGLAEAAYLNALAYAKERKQGGDLIKAAPAvtiIHHPdvrrslmTQKAYAEGSRAldlyTATVQDLAERKATEGEDR 333
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 801237228 286 SDVE-FAAAVAATLAPATAQRCTQ---DCIQVHGGIGFTWEHDTNVYYRRA 332
Cdd:cd01153  334 KALSaLADLLTPVVKGFGSEAALEavsDAIQVHGGSGYTREYPIEQYYRDA 384
ACAD_fadE6_17_26 cd01152
Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Putative acyl-CoA ...
7-87 2.31e-04

Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26; Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.


Pssm-ID: 173841 [Multi-domain]  Cd Length: 380  Bit Score: 44.26  E-value: 2.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228   7 PEHYELADSVRSLVARVAPSEVLH--AALESPVENPPPYWQAA-AEQGLQGVHLAESVGGQGFGILELAVVLAEFGYGAV 83
Cdd:cd01152    1 PSEEAFRAEVRAWLAAHLPPELREesALGYREGREDRRRWQRAlAAAGWAAPGWPKEYGGRGASLMEQLIFREEMAAAGA 80

                 ....
gi 801237228  84 PGPF 87
Cdd:cd01152   81 PVPF 84
PRK13026 PRK13026
acyl-CoA dehydrogenase; Reviewed
448-604 4.88e-04

acyl-CoA dehydrogenase; Reviewed


Pssm-ID: 237277 [Multi-domain]  Cd Length: 774  Bit Score: 43.41  E-value: 4.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 448 FGTDNQKQRLLPPTFRGDIFWCQLFSEPGAGSDLASLATKAT----RVDG----GWRITGQKIWTTGAQYSQWGALLART 519
Cdd:PRK13026 174 YGTQEQKDYWLPRLADGTEIPCFALTGPEAGSDAGAIPDTGIvcrgEFEGeevlGLRLTWDKRYITLAPVATVLGLAFKL 253
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 520 -DPSA----PKHNGITYFLLDMKSEGVQV----KPLreltGKEFFN-TVYLDDVFVPDELVLG---EVNRGWEVSRNTLT 586
Cdd:PRK13026 254 rDPDGllgdKKELGITCALIPTDHPGVEIgrrhNPL----GMAFMNgTTRGKDVFIPLDWIIGgpdYAGRGWRMLVECLS 329
                        170
                 ....*....|....*...
gi 801237228 587 AERvsiGGSdstfLPTLG 604
Cdd:PRK13026 330 AGR---GIS----LPALG 340
NcnH cd01159
Naphthocyclinone hydroxylase; Naphthocyclinone is an aromatic polyketide and an antibiotic, ...
487-567 6.32e-04

Naphthocyclinone hydroxylase; Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.


Pssm-ID: 173848 [Multi-domain]  Cd Length: 370  Bit Score: 42.72  E-value: 6.32e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 801237228 487 KATRVDGGWRITGQKIWTTGAQYSQWGALLA-RTDPSAPKHngITYFLLDMksEGVQVKP------LRElTGKeffNTVY 559
Cdd:cd01159  112 RAERVDGGYRVSGTWPFASGCDHADWILVGAiVEDDDGGPL--PRAFVVPR--AEYEIVDtwhvvgLRG-TGS---NTVV 183

                 ....*...
gi 801237228 560 LDDVFVPD 567
Cdd:cd01159  184 VDDVFVPE 191
Acyl-CoA_dh_2 pfam08028
Acyl-CoA dehydrogenase, C-terminal domain;
218-278 7.81e-03

Acyl-CoA dehydrogenase, C-terminal domain;


Pssm-ID: 429790 [Multi-domain]  Cd Length: 133  Bit Score: 37.33  E-value: 7.81e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 801237228  218 LSAEAVGVARWATDTASAYA--KIREQFGRPIGQFQAIKHKCAEMiadteratAAVWDAARAL 278
Cdd:pfam08028   2 IAAAALGAARAALAEFTERArgRVRAYFGVPLAEDPATQLALAEA--------AARIDAARLL 56
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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