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Conserved domains on  [gi|857906384|emb|CDT04051|]
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Polar flagellin B/D [Vibrio crassostreae]

Protein Classification

flagellin( domain architecture ID 11483458)

flagellin polymerizes to form the filaments of bacterial flagella; similar to Vibrio cholerae flagellins A-E, and to Pseudomonas aeruginosa A-type flagellin FliC

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
2-377 0e+00

polar flagellin E;


:

Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 617.71  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   2 AVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGA 81
Cdd:PRK08869   1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  82 MNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGADNGEAVMLQL 161
Cdd:PRK08869  81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 162 KDMRSDNAQMGGKSYQTENAKDKDWNVQAGSNDLKLSFTDNFGQAQEIDISAKAGDDIEELATYINGQQDSVKASVTEDG 241
Cdd:PRK08869 161 KSMRSDAKIMGGVSYDAEGGADKDWTVGAGNTDLNVSFDDKGGETQAITINAKAGDDIEELATYINGQTDGVGASVSEDG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 242 KLQMFTGNNKVEGEVAFSGSLAGELGMQPGKDVTVDTIDVTSVGGAQESVAVIDAALKYVDSHRAELGAFQNRFDHAISN 321
Cdd:PRK08869 241 KLQLFAAGQKVSGGVSFSGGLAAELGLGNATAVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINN 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 857906384 322 LDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLLG 377
Cdd:PRK08869 321 LQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
2-377 0e+00

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 617.71  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   2 AVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGA 81
Cdd:PRK08869   1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  82 MNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGADNGEAVMLQL 161
Cdd:PRK08869  81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 162 KDMRSDNAQMGGKSYQTENAKDKDWNVQAGSNDLKLSFTDNFGQAQEIDISAKAGDDIEELATYINGQQDSVKASVTEDG 241
Cdd:PRK08869 161 KSMRSDAKIMGGVSYDAEGGADKDWTVGAGNTDLNVSFDDKGGETQAITINAKAGDDIEELATYINGQTDGVGASVSEDG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 242 KLQMFTGNNKVEGEVAFSGSLAGELGMQPGKDVTVDTIDVTSVGGAQESVAVIDAALKYVDSHRAELGAFQNRFDHAISN 321
Cdd:PRK08869 241 KLQLFAAGQKVSGGVSFSGGLAAELGLGNATAVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINN 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 857906384 322 LDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLLG 377
Cdd:PRK08869 321 LQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
1-376 1.76e-54

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 181.19  E-value: 1.76e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   1 MAVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:NF038071   1 MGLSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  81 AMNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGT---HGTKSFQIGADNGEAv 157
Cdd:NF038071  81 AMDEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLLKDGgkfEAAVTFQIGGSSAEK- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 158 mlqlkdmrsdnaqmggksyqtenakdkdwnvqagsndlklsftdnfgqaqeidISAKAGDDIEELATYINGQQDSVKASV 237
Cdd:NF038071 160 -----------------------------------------------------LDVDASANVQKVNAEVVGTEKDVTAGI 186

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 238 TEDGKlqmftgnnkvegevafsgslagelgmqpgkdvtvdtidvtsvgGAQESVAVIDAALKYVDSHRAELGAFQNRFDH 317
Cdd:NF038071 187 GTQAK-------------------------------------------AASAAITKLDTLLGDIGAVRSQFGANINRLEH 223

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 857906384 318 AISNLDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLL 376
Cdd:NF038071 224 TVNNLSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLL 282
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
5-377 3.96e-53

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 176.21  E-value: 3.96e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   5 VNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:COG1344    3 ISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALGE 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  85 TTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTH-GTKSFQIgadngeavmlqlkd 163
Cdd:COG1344   83 ITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTAtDTPPFQV-------------- 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 164 mrsdnaqmggksyqtenakdkdwnvqagsndlklsftdnfgqaqeidisakagddieelatyingqqdsvkasvtedgkl 243
Cdd:COG1344      --------------------------------------------------------------------------------

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 244 qMFTGNNkvegevafsgslagelgmqpgkdvtvdtidvtsvGGAQESVAVIDAALKYVDSHRAELGAFQNRFDHAISNLD 323
Cdd:COG1344  149 -DYQGDA----------------------------------GQRTAALGALDAALDNVSSARAELGARQNRLESAINNLS 193

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 857906384 324 NINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQApnSALSLLG 377
Cdd:COG1344  194 DLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQL--SLLDLLR 245
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-141 1.20e-38

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 135.16  E-value: 1.20e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384    5 VNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 857906384   85 TTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGT 141
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-367 8.57e-23

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 97.03  E-value: 8.57e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384    4 NVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMN 83
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   84 ETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGADNGEAVMLQLKD 163
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSEDEGGEVTYNGDGG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  164 MRSDNAQMGGKSYQTENAKDKDWNVQAGSNDLKLSFTDNFGQAQEIDISAKAGDDIEELATYINGqqdsvkasvtedgkl 243
Cdd:TIGR02550 161 QRKVQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTGDDLIDALKKLEDALSSGDAKAALSASLND--------------- 225

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  244 qmftgnnkvegevafsgslagelgmqpgkdvtvdtidvtsvggaqesvavIDAALKYVDSHRAELGAFQNRFDHAISNLD 323
Cdd:TIGR02550 226 --------------------------------------------------LDKALDNVLSARAEVGARLNRLENLNSRLS 255

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 857906384  324 NINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQ 367
Cdd:TIGR02550 256 EQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQ 299
 
Name Accession Description Interval E-value
PRK08869 PRK08869
polar flagellin E;
2-377 0e+00

polar flagellin E;


Pssm-ID: 236344 [Multi-domain]  Cd Length: 376  Bit Score: 617.71  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   2 AVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGA 81
Cdd:PRK08869   1 AVNVNTNVSAMTAQRNLNGATSALSQSMERLSSGKRINSAKDDAAGLQISNRLTTQIRGLDVAVRNANDGISIAQTAEGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  82 MNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGADNGEAVMLQL 161
Cdd:PRK08869  81 MNETTNILQRMRDLSLQSANGSNSASDRQALQEEVTALNDELNRIAETTSFGGTKLLNGSFGTKSFQIGANSGEAVSLDL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 162 KDMRSDNAQMGGKSYQTENAKDKDWNVQAGSNDLKLSFTDNFGQAQEIDISAKAGDDIEELATYINGQQDSVKASVTEDG 241
Cdd:PRK08869 161 KSMRSDAKIMGGVSYDAEGGADKDWTVGAGNTDLNVSFDDKGGETQAITINAKAGDDIEELATYINGQTDGVGASVSEDG 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 242 KLQMFTGNNKVEGEVAFSGSLAGELGMQPGKDVTVDTIDVTSVGGAQESVAVIDAALKYVDSHRAELGAFQNRFDHAISN 321
Cdd:PRK08869 241 KLQLFAAGQKVSGGVSFSGGLAAELGLGNATAVTVDDLDISTVGGAQQAVAVIDAALKYVDSHRADLGAFQNRFTHAINN 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 857906384 322 LDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLLG 377
Cdd:PRK08869 321 LQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQAKQAPQSALSLLQ 376
PRK06819 PRK06819
FliC/FljB family flagellin;
1-376 2.23e-86

FliC/FljB family flagellin;


Pssm-ID: 235867 [Multi-domain]  Cd Length: 376  Bit Score: 266.26  E-value: 2.23e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   1 MAVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK06819   1 MAAVINTNSLSLLTQNNLNKSQSSLGTAIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISIAQTTEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  81 AMNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHgTKSFQIGADNGEAVMLQ 160
Cdd:PRK06819  81 ALNEINNNLQRVRELTVQAQNGSNSSSDLDSIQDEISQRLAEIDRVSDQTQFNGVKVLAEDT-TMSIQVGANDGETIDIN 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 161 LKDMRSDNAQMGGKSYQTENAkdkDWNVQAGSNDLKLSFTDNFGQAQEIDISAKAGDDIEELAT---YINGQQDSVKASV 237
Cdd:PRK06819 160 LQKIDSKSLGLGSFSVSGVSG---ALTSLTFTDTALDTSVTGVTTTTALDFSDISTFAKGATVHgigDVGTDGAYADGYV 236

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 238 TEDGKLQMFTG-NNKVEGEVAFSGSLAGELGMQPGKDVTVDTIDVTSVgGAQESVAVIDAALKYVDSHRAELGAFQNRFD 316
Cdd:PRK06819 237 IRTTDGKQYKGeVDATNGKVTFADDANGDPITDATKLEAAAQFSPAGK-ATASPLETLDDALKQVDGLRSSLGAVQNRFE 315

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 317 HAISNLDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLL 376
Cdd:PRK06819 316 STVTNLNNTVTNLSSARSRIEDADYATEVSNMSRAQILQQAGTSVLAQANQVPQTVLSLL 375
PRK12802 PRK12802
flagellin; Provisional
 1-377 4.18e-70

flagellin; Provisional


Pssm-ID: 139237 [Multi-domain]  Cd Length: 282  Bit Score: 221.29  E-value: 4.18e-70
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   1 MAVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK12802   1 MALTVNTNITSLTVQKNLSRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRQTSQIRGQTQAIKNANDGISIAQTAEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  81 AMNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGAdngeavmlq 160
Cdd:PRK12802  81 ALQESTNILQRMRELAVQSRNDSNDSTDRAALNKEFTTMLDEITRIATSTTLNGKNLLDGSAGTMTFQVGA--------- 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 161 lkdmrsdnaqmggksyqtenakdkdwnvqagsndlklsftdNFGQAQEIDISAKAGDDIeelatyingqqdsvkasvted 240
Cdd:PRK12802 152 -----------------------------------------NTGQSNQITFGLSASFDA--------------------- 169

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 241 gklqmftgnnkvegevafSGSLAGELGMQPGKDvtvdtiDVTSVGGAQESVAVIDAALKYVDSHRAELGAFQNRFDHAIS 320
Cdd:PRK12802 170 ------------------TGLGVGSGTLITGAD------SAAAETNAQAAITAIDAALQTINTTRADLGAAQNRLQSTIS 225

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 857906384 321 NLDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLLG 377
Cdd:PRK12802 226 NLQNINENASAARGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKLLQ 282
PRK12806 PRK12806
flagellin; Provisional
 1-377 1.32e-67

flagellin; Provisional


Pssm-ID: 183761 [Multi-domain]  Cd Length: 475  Bit Score: 220.72  E-value: 1.32e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   1 MAVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK12806   1 MAQVINTNVASLTAQRNLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQRMTAQIRGMNQAVRNANDGISLAQVAEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  81 AMNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGADNGEAVMLQ 160
Cdd:PRK12806  81 AMQETTNILQRMRELSVQAANSTNNSSDRASIQSEISQLKSELERIAQNTEFNGQRILDGSFSGASFQVGANSNQTINFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 161 LKDMRSDNAQMGGKSYQTE---------------------------------NAKDKDWNVQAGSNDLK---LSFTDNFG 204
Cdd:PRK12806 161 IGSIKASSIGGIATATGTEvagaaatditiaigggaatsinssanftgalngQDATSAYAKAAAINDAGiggLSVTASTS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 205 QAQEIDISAKAGDDIEELAT----------------------YINGQQ-------------------DSVKASVTEDGKL 243
Cdd:PRK12806 241 GTQAVGAIGGTAGDTYNLTIngvaiytnldvataltnsdlrdAINGVSnqtgvvaslnggnmtltaaDGRNITVTESGTG 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 244 QMFTGNNKVEGEVAFSGSLAGEL-------------------GMQPGKD-VTVDTIDVTSVGGAQESVAVIDAALKYVDS 303
Cdd:PRK12806 321 FTAGTDGLTVTGGAFDGALRGTLsisavdtiaiggtvaniglSANISKDtVGIDSLDVSTASGAQTAIKRIDAALNSVNS 400

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 857906384 304 HRAELGAFQNRFDHAISNLDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLLG 377
Cdd:PRK12806 401 NRANMGALQNRFESTIANLQNVSDNLSAARSRIQDADYAAEMASLTKNQILQQAGTAMLAQANSLPQSVLSLLG 474
PRK12804 PRK12804
flagellin; Provisional
 5-376 3.07e-56

flagellin; Provisional


Pssm-ID: 183759 [Multi-domain]  Cd Length: 301  Bit Score: 186.36  E-value: 3.07e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   5 VNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:PRK12804   3 INHNIAALNTLNRLSANNGASQKNMEKLSSGLKINRAGDDAAGLAISEKMRGQIRGLEMASKNAQDGISLIQTAEGALTE 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  85 TTNILQRMRDLSLQSSN-GSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTH-------GTKS--FQIGADNG 154
Cdd:PRK12804  83 THSILQRVRELVVQAGNtGTQDGTDLGAIQDEIKALVDEIDGISDRTEFNGKKLLDGTFkpaapaaGTKSltFQIGANAA 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 155 EAVMLQLKDMRSDNAqmggksyqteNAKDKDWNVQAGSNDLKLSFTDnfgqaqeidisakagddieelatyingqqdsvk 234
Cdd:PRK12804 163 QQLSVNIEAMSADAL----------GVKDTDGTLVTGKSVSDIDVTK--------------------------------- 199

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 235 asvtedgklqmftgnnkvegevafsgslagelgmqpgkdvtVDTIDVTSVGGAQESVAVIDAALKYVDSHRAELGAFQNR 314
Cdd:PRK12804 200 -----------------------------------------FANAAAAADGGFDDQLKIVDGAIKQVSDQRSKLGAVQNR 238

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 857906384 315 FDHAISNLDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLL 376
Cdd:PRK12804 239 LEHTINNLGASGENLTAAESRIRDVDMAKEMSEFTKNNILSQASQAMLAQANQQPQNVLQLL 300
lat_flg_LafA_2 NF038071
lateral flagellin LafA;
1-376 1.76e-54

lateral flagellin LafA;


Pssm-ID: 468331 [Multi-domain]  Cd Length: 283  Bit Score: 181.19  E-value: 1.76e-54
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   1 MAVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:NF038071   1 MGLSIHTNYASLVTQNQLNSTNKMLGTAMQRLGTGLRINSAADDAAGLQMATRLQAQSNGQKVGMRNAQDAISMMQTAEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  81 AMNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGT---HGTKSFQIGADNGEAv 157
Cdd:NF038071  81 AMDEMTNITQRMKDLATQSANGTASAADRAAMDAEFKELSAELDNIMDNTTFGGQKLLKDGgkfEAAVTFQIGGSSAEK- 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 158 mlqlkdmrsdnaqmggksyqtenakdkdwnvqagsndlklsftdnfgqaqeidISAKAGDDIEELATYINGQQDSVKASV 237
Cdd:NF038071 160 -----------------------------------------------------LDVDASANVQKVNAEVVGTEKDVTAGI 186

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 238 TEDGKlqmftgnnkvegevafsgslagelgmqpgkdvtvdtidvtsvgGAQESVAVIDAALKYVDSHRAELGAFQNRFDH 317
Cdd:NF038071 187 GTQAK-------------------------------------------AASAAITKLDTLLGDIGAVRSQFGANINRLEH 223

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 857906384 318 AISNLDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLL 376
Cdd:NF038071 224 TVNNLSNMKENTDMAKGRIMDADFAAESTNMTKNQMLMQAGMSVLSNSNQMTGMVTSLL 282
FlgL COG1344
Flagellin and related hook-associated protein FlgL [Cell motility];
5-377 3.96e-53

Flagellin and related hook-associated protein FlgL [Cell motility];


Pssm-ID: 440955 [Multi-domain]  Cd Length: 245  Bit Score: 176.21  E-value: 3.96e-53
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   5 VNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:COG1344    3 ISTNMSALNALRNLNRTQSDLAKLQEQLSSGKRINSASDDPAGAAIALRLRSQIRGLEQYQRNANDAISRLQTAEGALGE 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  85 TTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTH-GTKSFQIgadngeavmlqlkd 163
Cdd:COG1344   83 ITDILQRARELAVQAANGTLSDEDRAAIAAELEQLLDQLLSIANTTDFNGRYLFAGTAtDTPPFQV-------------- 148

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 164 mrsdnaqmggksyqtenakdkdwnvqagsndlklsftdnfgqaqeidisakagddieelatyingqqdsvkasvtedgkl 243
Cdd:COG1344      --------------------------------------------------------------------------------

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 244 qMFTGNNkvegevafsgslagelgmqpgkdvtvdtidvtsvGGAQESVAVIDAALKYVDSHRAELGAFQNRFDHAISNLD 323
Cdd:COG1344  149 -DYQGDA----------------------------------GQRTAALGALDAALDNVSSARAELGARQNRLESAINNLS 193

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 857906384 324 NINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQApnSALSLLG 377
Cdd:COG1344  194 DLSENLTAALSRLEDADMAEAITRLTKLQTLLQAALAALAQANQL--SLLDLLR 245
PRK08026 PRK08026
FliC/FljB family flagellin;
1-376 3.52e-50

FliC/FljB family flagellin;


Pssm-ID: 236140 [Multi-domain]  Cd Length: 529  Bit Score: 176.09  E-value: 3.52e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   1 MAVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK08026   1 MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEG 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  81 AMNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLnGTHGTKSFQIGADNGEAVMLQ 160
Cdd:PRK08026  81 ALSEINNNLQRVRELTVQAATGTNSQSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVL-AKDGSMKIQVGANDGETITID 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 161 LKDMRSD-------NAQMGGKSYQTENAKDK---DWNVQAGSNDLKLSFTDNFGQAQEIDISAKAGDDIEELATYINGQQ 230
Cdd:PRK08026 160 LKKIDSDtlgldgfNVNGKGTVANTAATVSDltaAGATLDTTGLYDVKTKNAALTTADALAKLGDGDKVTATATGGDYTY 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 231 DS--------------------------------VKASVTEDGKLQM------------FTGNN---------------- 250
Cdd:PRK08026 240 NAksgkyqaadlaatltpdvggtagasytikdgtYEVNVDSDGKITLggsalyidatgnLTTNNagaatkatldalkkta 319

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 251 ---------------------------KVEGEVAFSGSLAGELGMQPGKDVTVDTID----------------------- 280
Cdd:PRK08026 320 segaatakaalaaagvtvadgvtaktvKMSYTDKNGKVIDGGYAVKTGDDYYAADYDeitgaisatttyytakdgttkta 399

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 281 ------------VTSVGGA--------------------QESVAVIDAALKYVDSHRAELGAFQNRFDHAISNLDNINEN 328
Cdd:PRK08026 400 anklggadgkteVVTIDGKtyvasdgkqttlaeaaatttENPLAALDAAIASIDKFRSSLGAVQNRLDSAVTNLNNTTTN 479

                        490       500       510       520
                 ....*....|....*....|....*....|....*....|....*...
gi 857906384 329 VNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLL 376
Cdd:PRK08026 480 LSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLL 527
PRK12807 PRK12807
flagellin; Provisional
 5-376 6.71e-44

flagellin; Provisional


Pssm-ID: 171737 [Multi-domain]  Cd Length: 287  Bit Score: 153.44  E-value: 6.71e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   5 VNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:PRK12807   3 INTNINSMRTQEYMRQNQDKMNVSMNRLSSGKRINSAADDAAGLAIATRMRARQSGLEKASQNTQDGMSLIRTAESAMNS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  85 TTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLnGTHGTKSFQIGADNGEAVMLQLKDM 164
Cdd:PRK12807  83 VSNILTRMRDIAVQSSNGTNTAENQSALQKEFAELQEQIDYIAKNTEFNDKNLL-AGTGAVTIGSTSISGAEISIETLDS 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 165 RSDNAQMggksyqtenakdkdwnvqagsndlklsftdnfgqaqEIDISAKAGDDIEelatyINGQQDSVKASVTEDgklq 244
Cdd:PRK12807 162 SATNQQI------------------------------------TIKLANTTAEKLG-----IDATTSNISISGAAS---- 196

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 245 mftgnnkvegevafsgslagelgmqpgkdvtvdtidvtsvggAQESVAVIDAALKYVDSHRAELGAFQNRFDHAISNLDN 324
Cdd:PRK12807 197 ------------------------------------------ALAAISALNTALNTVAGNRATLGATLNRLDRNVENLNN 234

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 857906384 325 INENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLL 376
Cdd:PRK12807 235 QATNMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLL 286
Flagellin_N pfam00669
Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial ...
 5-141 1.20e-38

Bacterial flagellin N-terminal helical region; Flagellins polymerize to form bacterial flagella. This family includes flagellins and hook associated protein 3. Structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425809 [Multi-domain]  Cd Length: 139  Bit Score: 135.16  E-value: 1.20e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384    5 VNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:pfam00669   1 INTNSAALAARSNLNKNQAELSKAQERLSTGLRINSALDDAAGLAISVSLRAQIAGLSQAVRNNSLGIGRLQTAQGALSE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 857906384   85 TTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGT 141
Cdd:pfam00669  81 VTDILQRMKELAVQASNGGNSDIDRASIQAEIQQLTDELNNIANTTSFNGEYLLAGI 137
PRK12803 PRK12803
flagellin; Provisional
 5-376 6.61e-36

flagellin; Provisional


Pssm-ID: 183758 [Multi-domain]  Cd Length: 335  Bit Score: 133.78  E-value: 6.61e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   5 VNTNVSAMTAQRylNNANSAQQTS--MERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAM 82
Cdd:PRK12803   3 INHNTSAINASR--NNSINAANLSktQEKLSSGHRINRASDDAAGMGVAGKINAQIRGLSQASRNTSKAINFIQTTEGNL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  83 NETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNgthgTKSFQIGADNGEAVMLQLK 162
Cdd:PRK12803  81 NEVEKVLVRMKELAVQSGNGTYSDADRGSIQIEIEQLTDEINRIADQAQYNQMHMLS----NKSAAQNVRTAEELGMQPA 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 163 DMRSDNAQMGGKSYQTenakdkdWNVQAGSNdlklsftdnfgQAQEIDISAKAGDdieeLATYINGQQDSVKASVTEDGK 242
Cdd:PRK12803 157 KINTPASLSGSQASWT-------LRVHVGAN-----------QDEAIAVNIYAAN----VANLFSGEGAQQAAPVQEGAQ 214

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 243 LQmftgnnkvegevafSGSLAGELGMQPGKDVTVDTIDVTSVGGAQESVAVIDAALKYVDSHRAELGAFQNRFDHAISNL 322
Cdd:PRK12803 215 QE--------------GAQAAPAPAAAPAQGGVNSPVNVTTTVDANMSLAKIENAIRMISDQRANLGAFQNRLESIKAST 280

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 857906384 323 DNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLL 376
Cdd:PRK12803 281 EYAIENLKASYAQIKDATMTDEVVASTTNSILTQSAMAMIAQANQVPQYVLSLL 334
PRK12808 PRK12808
flagellin; Provisional
 5-376 1.33e-35

flagellin; Provisional


Pssm-ID: 237212 [Multi-domain]  Cd Length: 476  Bit Score: 135.85  E-value: 1.33e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   5 VNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:PRK12808   3 INTNINSMRTQEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIATRMRARESGLGVAANNTQDGMSLIRTADSAMNS 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  85 TTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGT---------KSFQIGADNGE 155
Cdd:PRK12808  83 VSNILLRMRDIANQSANGTNTDKNQAALQKEFAELQKQITYIADNTQFNDKNLLNSNSSIniqtldssdGDKQIGIDLKS 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 156 AVM--LQLKDMrSDNAQMGGKSYQTENAKDKDWNVQAGSNDLKLSF----------------------TDNFGQAQEIDI 211
Cdd:PRK12808 163 ATLeaLGINDL-SIGANTDIEAVSTKIAALDKNTIAKATVEAKAAFdkakddtkaedsnildaaadgfKDGKADDAAKDV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 212 SAKA--------GDDIEELATYINGQQDSVKASVTEDGKLQMFTGNNKVEGEVAFSGS---------------------- 261
Cdd:PRK12808 242 EAIKtalsaftgAATLEEAEAAKTAFEVAQKDLVDTYTKKAALTKDAVADLDTAKTTStrskaakdlvaaydkaksgakp 321

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 262 ---------------------------------LAGELGMQPGKDVTVDTIDVTSVGGAQE------SVAVIDAALKYVD 302
Cdd:PRK12808 322 ndvakayleakmayekdnnaidgkskleaaddaLEKDAIKTDASKVLVPKLEAAKKATTNSkadsldAVKAIDEALKTVA 401

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 857906384 303 SHRAELGAFQNRFDHAISNLDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLL 376
Cdd:PRK12808 402 DNRATLGATLNRLDFNVNNLKSQSSSMASAASQIEDADMAKEMSEMTKFKILNEAGISMLSQANQTPQMVSKLL 475
PRK12584 PRK12584
flagellin A; Reviewed
 1-376 2.07e-32

flagellin A; Reviewed


Pssm-ID: 237146 [Multi-domain]  Cd Length: 510  Bit Score: 127.33  E-value: 2.07e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   1 MAVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK12584   1 MAFQVNTNINALNAHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIADSLRSQASSLGQAIANTNDGMGIIQVADK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  81 AMNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGADNGEAVMLQ 160
Cdd:PRK12584  81 AMDEQLKILDTIKVKATQAAQDGQTTESRKAIQSDIVRLIQGLDNIGNTTTYNGQALLSGQFTNKEFQVGAYSNQSIKAS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 161 LKDMRSDNAQM-----------------------GGKSYQTENAK--------------------DK-----DWNV---- 188
Cdd:PRK12584 161 IGSTTSDKIGQvriatgalitasgdisltfkqvdGVNDVTLESVKvsssagtgigvlaevinknsDRtgvkaYASVitts 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 189 -------------------------QAGSNDLKL--------------SFTDNFGQ-------AQEIDISAKAGDDIEEL 222
Cdd:PRK12584 241 dvavqsgslsnltlngihigniadiKKNDSDGRLvaainavtsetgveAYTDQKGRlnlrsidGRGIEIKTDSVSNGPSA 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 223 ATYINGQQD-------------------SVKASVTEDGKLQMFTGNNKVEGEVA------------FSGSLAGELGMQPG 271
Cdd:PRK12584 321 LTMVNGGQDltkgstnygrlsltrldarDINVVSASDSQHLGFSAIGFGESQVAettvnlrdvtgnFNANVKSASGANYN 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 272 KDVTVDTID----VTSVGGAQESVAVIDAALKYVDSHRAELGAFQNRFDHAISNLDNINENVNASKSRIKDTDFAKETTQ 347
Cdd:PRK12584 401 AVIASGNQSlgsgVTTLRGAMVVMDIAESAMKMLDKVRSDLGSVQNQMISTVNNISITQVNVKAAESQIRDVDFAEESAN 480

                        490       500
                 ....*....|....*....|....*....
gi 857906384 348 MTKSQILSQASSSILAQAKQAPNSALSLL 376
Cdd:PRK12584 481 FNKNNILAQSGSYAMSQANTVQQNILRLL 509
PRK13588 PRK13588
flagellin B; Provisional
 1-376 6.42e-32

flagellin B; Provisional


Pssm-ID: 237440 [Multi-domain]  Cd Length: 514  Bit Score: 125.75  E-value: 6.42e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   1 MAVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK13588   1 MSFRINTNIAALNAHAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADSLRSQSANLGQAIRNANDAIGMVQTADK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  81 AMNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGADNGEAVMLQ 160
Cdd:PRK13588  81 AMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKAS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 161 LKDMRSD---NAQMGGKSYQTENAKDKDWNVQAGSNDLKLSFTDNFG--QAQEIDISAKAGDDIEELATYING------- 228
Cdd:PRK13588 161 IGATSSDkigHVRMETSSFSGEGMLASAAAQNLTEVGLNFKQVDGVNdyKIETVRISTSAGTGIGALSEIINRfsdtlgv 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 229 ----------------------------------------------------QQDSVKASVTEDGKLQMFTGN------- 249
Cdd:PRK13588 241 rasynvmatggtpvqsgtvreltingveigtvndvhkndadgrlinainsvkDRTGVEASLDIQGRINLTSIDgraisvh 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 250 -NKVEGEVAFSGSLAGELGM------------QPGKDVTVDTID------------------------------------ 280
Cdd:PRK13588 321 aASASGQVFGGGNFAGISGTqhavvgrltltrTDARDIIVSGVNfshvgfhsaqgvaeytvnlravrgifdanvasaaga 400

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 281 -----------------VTSVGGAQESVAVIDAALKYVDSHRAELGAFQNRFDHAISNLDNINENVNASKSRIKDTDFAK 343
Cdd:PRK13588 401 nangaqaetnsqgigagVTSLKGAMIVMDMAESARTQLDKIRSDMGSVQMQLVSTINNISVTQVNVKAAESQIRDVDFAE 480

                        490       500       510
                 ....*....|....*....|....*....|...
gi 857906384 344 ETTQMTKSQILSQASSSILAQAKQAPNSALSLL 376
Cdd:PRK13588 481 ESANFSKYNILAQSGSFAMAQANAVQQNVLRLL 513
PRK12805 PRK12805
FliC/FljB family flagellin;
3-376 4.05e-29

FliC/FljB family flagellin;


Pssm-ID: 183760 [Multi-domain]  Cd Length: 287  Bit Score: 114.20  E-value: 4.05e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   3 VNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAM 82
Cdd:PRK12805   1 MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAAGLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSAL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  83 NETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIgadngeavmlqlk 162
Cdd:PRK12805  81 SSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAATQV------------- 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 163 dmrsdnaqmggksyqtenakdkdwnvqagsndlklsftdnfgqaqEIDISAKAGDDIeelatyingqqdsvkasvtedgK 242
Cdd:PRK12805 148 ---------------------------------------------SIQASDKANDLI----------------------N 160

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 243 LQMFTGNnkvegevafsGSLAGELGMQPGKDVT-VDTIDVTSVGGAQESVAVIDAALKYVDSHRAELGAFQNRFDHAISN 321
Cdd:PRK12805 161 IDLFNAK----------GLSAGTITLGSGSTVAgYSALSVADADSSQEATEAIDELINNISNGRALLGAGMSRLSYNVSN 230

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 857906384 322 LDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLL 376
Cdd:PRK12805 231 VNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQTPQMLTQLI 285
PRK08411 PRK08411
flagellin; Reviewed
 1-231 1.38e-25

flagellin; Reviewed


Pssm-ID: 236260 [Multi-domain]  Cd Length: 572  Bit Score: 108.15  E-value: 1.38e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   1 MAVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK08411   1 MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADDASGMAIADSLRSQANTLGQAISNGNDALGILQTADK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  81 AMNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGADNGEAVMLQ 160
Cdd:PRK08411  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTVKAT 160

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 857906384 161 LKDMRSDnaQMGGKSYQTENAKDKDWNVQ------AGSNDLKLsftdnfgqaQEIDISAKAGDDIEELATYINGQQD 231
Cdd:PRK08411 161 IGATQSS--KIGVTRFETGARITTSGVVQltiknyNGIDDFKF---------QNVVISTSVGTGLGALAEEINKNAD 226
PRK13589 PRK13589
flagellin A;
1-258 3.27e-24

flagellin A;


Pssm-ID: 172158 [Multi-domain]  Cd Length: 576  Bit Score: 103.95  E-value: 3.27e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   1 MAVNVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEG 80
Cdd:PRK13589   1 MGFRINTNIGALNAHANSVVNSRELDKSLSRLSSGLRINSAADDASGMAIADSLRSQAATLGQAINNGNDAIGILQTADK 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  81 AMNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGADNGEAVMLQ 160
Cdd:PRK13589  81 AMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFTNQEFQIGASSNQTIKAT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 161 LKDMRSdnAQMGGKSYQTENAKDKDWNVQAGSNDlkLSFTDNFgQAQEIDISAKAGDDIEELATYINGQQDSVK------ 234
Cdd:PRK13589 161 IGATQS--SKIGVTRFETGGRSFTSGEVQLTIKN--YNGIDDF-KFQKVVISTSVGTGLGALAEEINKSADKTGvratft 235

                        250       260       270
                 ....*....|....*....|....*....|
gi 857906384 235 ------ASVTEDGKLQMFTGNNKVEGEVAF 258
Cdd:PRK13589 236 vettgvAAIKAGTTSQDFAINGVTIGQVAY 265
flagell_flgL TIGR02550
flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated ...
 4-367 8.57e-23

flagellar hook-associated protein 3; This protein family consists of flagellar hook-associated proteins designated FlgL (or HAP3) encoded in bacterial flagellar operons. A N-terminal region of about 150 residues and a C-terminal region of about 85 residues are conserved. Members show considerable length heterogeneity between these two well-conserved terminal regions; the seed alignment 486 columns, 393 of which are represented in the model, while members of this family are from 287 to over 500 residues in length. This model distinguishes FlgL from the flagellin gene product FliC. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274195 [Multi-domain]  Cd Length: 306  Bit Score: 97.03  E-value: 8.57e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384    4 NVNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMN 83
Cdd:TIGR02550   1 RVSTNMLYNNSLNSITNNQSRLAKLQQQLSSGKRINKPSDDPVAAAQALNLNQELAQLEQYQKNIDDAKNWLSQTETALS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   84 ETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTKSFQIGADNGEAVMLQLKD 163
Cdd:TIGR02550  81 SVGDVLQRARELAVQAANGTLSDDDRKAIAKEIKQLLDQLVNLANTKDGNGRYIFSGTKTDTPPFSEDEGGEVTYNGDGG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  164 MRSDNAQMGGKSYQTENAKDKDWNVQAGSNDLKLSFTDNFGQAQEIDISAKAGDDIEELATYINGqqdsvkasvtedgkl 243
Cdd:TIGR02550 161 QRKVQVASNRSMPIGHPGDKVFMSIPNNDKSVFSTGDDLIDALKKLEDALSSGDAKAALSASLND--------------- 225

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  244 qmftgnnkvegevafsgslagelgmqpgkdvtvdtidvtsvggaqesvavIDAALKYVDSHRAELGAFQNRFDHAISNLD 323
Cdd:TIGR02550 226 --------------------------------------------------LDKALDNVLSARAEVGARLNRLENLNSRLS 255

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 857906384  324 NINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQ 367
Cdd:TIGR02550 256 EQKLQLTEQLSDLEDVDLAEAISDLNMQQAALQAALKTFAKIQQ 299
Flagellin_C pfam00700
Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial ...
 291-376 7.39e-19

Bacterial flagellin C-terminal helical region; Flagellins polymerize to form bacterial flagella. There is some similarity between this family and pfam00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate and this is shown to be correct as structurally this family forms an extended helix that interacts with pfam00700.


Pssm-ID: 425827 [Multi-domain]  Cd Length: 86  Bit Score: 80.45  E-value: 7.39e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  291 VAVIDAALKYVDSHRAELGAFQNRFDHAISNLDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPN 370
Cdd:pfam00700   1 LDLIDEAITDLDSVRADLGAVQNRLESATTNLNNQQDNLKAAISRIEDVDPAEESTRMTKLQIQIQASYSLLSQANQLPQ 80


                  ....*.
gi 857906384  371 SALSLL 376
Cdd:pfam00700  81 SLLNLL 86
PRK06663 PRK06663
flagellar hook-associated protein 3;
14-363 3.58e-18

flagellar hook-associated protein 3;


Pssm-ID: 180648 [Multi-domain]  Cd Length: 419  Bit Score: 85.51  E-value: 3.58e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  14 AQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETTNILQRMR 93
Cdd:PRK06663  13 LKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYLQSITNILQRAR 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  94 DLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGT------------HGTKSFQIGADNGEAVMLQL 161
Cdd:PRK06663  93 ELAVQGANGTYQADDKKKIAKEIDELLEDLVDIANARGADGYSIFSGTkidtepfevirgNIKGLQGDAGSNQIIGVEYN 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 162 KDMRSDNAQMGGKSYQTENAKDKdwNVQAGSNDLKLSFTDNFG-QAQE--------IDISAKAGDDIEELATYINGQQDS 232
Cdd:PRK06663 173 GDIGEQNREIENGIYIPVNYPGN--KVFWGTNQSIISSVDASGyVVKEdqkiyidgVEIHLSAGDTIDDIIAKINDSSAP 250

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 233 VKASV--TEDGkLQMFTGN------NKVEGEVAFS--GSLAGELGMQP-----GKDVTVDTI--------------DVTS 283
Cdd:PRK06663 251 VKASLdpVLNS-ISLKTTTphqiwlEDEEGGTVLQdlGLITNATKEPPynysnSAEVSGRSIfdsliqlrdallnnDQEL 329

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 284 VGGaqESVAVIDAALKYVDSHRAELGAFQNRFDHAISNLDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILA 363
Cdd:PRK06663 330 IGG--RALGEIDEALDNLLTTLADLGAKENRLDRSYARISKEKLDMTEALSKNEDIDVTEAITNLNMLELAHQASLGVSG 407
flgL PRK07701
flagellar hook-associated protein FlgL; Validated
 5-155 8.90e-16

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 181087 [Multi-domain]  Cd Length: 298  Bit Score: 76.96  E-value: 8.90e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   5 VNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:PRK07701   3 VTQNMLANNFLRNINSNLEKLDKYQEQLSTGKKITRPSDDPVVAMKSLRYRTDLAEVEQYQKNASDAKSWLENTESALDQ 82

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 857906384  85 TTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTsFGGNKLLNGTH-GTKSFQIGADNGE 155
Cdd:PRK07701  83 ATDILQRARELAVQAANGTNTQTDRQAIAQEIEQLKEQLIQIANTQ-YNGRYIFNGTKtDTPPVTDDGDNIE 153
flgL PRK08870
flagellar hook-associated protein FlgL; Reviewed
 18-364 1.79e-10

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 236345 [Multi-domain]  Cd Length: 404  Bit Score: 61.85  E-value: 1.79e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  18 LNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSL 97
Cdd:PRK08870  16 MLDQQSQLSQLQQQLSSGKKLLTPSDDPVAAAQAVNLSQQSALLDQYTKNINLARNRLQQEESTLGSVEDLLQRARELVV 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  98 QSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTH-GTKSFQIGA--------DNGEAVMlQLKDMRS-- 166
Cdd:PRK08870  96 QAGNGSLSDSDRQAIATELQGLRDQLLNLANSKDGSGNYLFAGTQsGTQPFAFDAsgnvvysgDQGQRQV-QVADSVQva 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 167 ---------DNAQMGGKSYQTENAKDKDWNVQAGSNDLKLSFTDNFGQAQEIDISAKAGDDIEELATyingqqDSVKASV 237
Cdd:PRK08870 175 tndpgdevfMSVPNGGGDYVPNANASNTGTGLLGSASITDPSDPVNGDTYTITFTDNGAGGTNTYVT------DSSTGTV 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 238 TEDgklQMFTGNNKVEG---EVAFSGSLAG--ELGMQPGKDVTV-DTID----------VTSVGGAQ------ESVAVID 295
Cdd:PRK08870 249 VTA---QAYDAGQPINFngvEVQISGAPAAgdSFTLTPAPQASIfDTLDdaiaalespvSTPAADAAlqnalaQALRNLD 325

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 857906384 296 AALKYVDSHRAELGAFQNRFDHAISNLDNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQ 364
Cdd:PRK08870 326 NALNNVLTARASVGARLNELDSAEAVHEDNKLQNTSALSDLEDLDYASAISEFELQQAALQAAQQAFSK 394
flgL PRK12717
flagellar hook-associated protein 3;
13-123 1.58e-07

flagellar hook-associated protein 3;


Pssm-ID: 171679 [Multi-domain]  Cd Length: 523  Bit Score: 53.21  E-value: 1.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  13 TAQRYLNNANSAQQT------SMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETT 86
Cdd:PRK12717   5 TSQFYESSAANYQRNysnlvkTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSIN 84

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 857906384  87 NILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDEL 123
Cdd:PRK12717  85 DTLQRARELAVSAGNGGLTDADRKAIASELKQIEAQL 121
flgL PRK08412
flagellar hook-associated protein FlgL; Validated
 17-141 1.02e-05

flagellar hook-associated protein FlgL; Validated


Pssm-ID: 236261 [Multi-domain]  Cd Length: 827  Bit Score: 47.51  E-value: 1.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  17 YLNNANSAQQTSMERL-------ASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETTNIL 89
Cdd:PRK08412   8 KYNQMNNYQNALQNKLndvntqiASGLKIQYGYQDSDVYNQNLKLQYEENTLDQGIDVASSAYTFTLNTDKALNEFSKTM 87

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 857906384  90 QRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAeTTSFGGNKLLNGT 141
Cdd:PRK08412  88 EAFKTKLIQAANDVHSETSREAIANDLEALKEHMINLA-NTSIGGEFLFSGS 138
flgL PRK07192
flagellar hook-associated protein FlgL; Reviewed
 1-145 1.75e-05

flagellar hook-associated protein FlgL; Reviewed


Pssm-ID: 235956 [Multi-domain]  Cd Length: 305  Bit Score: 46.16  E-value: 1.75e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   1 MAVNVNTNVSAMTaqRYLNNANSAQQTSMERLASGSKINSAKDDAAG------LQISNRLNVQSRgldvavRNANDGISI 74
Cdd:PRK07192   1 MRISTNTLYSTML--RSIQQLQAGLGKLQQQMSTGKRILTPSDDPIAsarlleLSREQSNNSQYA------DNIANLSNS 72

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 857906384  75 AQTAEGAMNETTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFGGNKLLNGTHGTK 145
Cdd:PRK07192  73 LNNQEGHLSGVNDQLQSIRSLLVAAGNGSLSDEDRSAMATELRSMLDSLLGLANAKDSEGNYLFSGTASNT 143
flgL PRK08073
flagellar hook-associated protein 3;
5-133 1.31e-04

flagellar hook-associated protein 3;


Pssm-ID: 181222 [Multi-domain]  Cd Length: 287  Bit Score: 43.43  E-value: 1.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   5 VNTNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNE 84
Cdd:PRK08073   3 VSTFQNANWAKNQLMDLNVQQQYHRNQVTSGKKNLSMSEDPLAASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTLSG 82

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 857906384  85 TTNILQRMRDLSLQSSNGSNSKSERVAIQEEVTALNDELNRIAETTSFG 133
Cdd:PRK08073  83 MSKSLTRVDQLVLQALNGTNDEKELKAIGAEIDQILKQVVYLANTKEQG 131
PRK12687 PRK12687
flagellin; Reviewed
 7-376 2.44e-04

flagellin; Reviewed


Pssm-ID: 105853 [Multi-domain]  Cd Length: 311  Bit Score: 42.73  E-value: 2.44e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384   7 TNVSAMTAQRYLNNANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMN--- 83
Cdd:PRK12687   6 TNTSAMTALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWSIATTMRSDNEALSAVSDALGLGAATVDTMYTALTsvv 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  84 -ETTNILQRMRDLSLQSSNGSnskSERVAIQEEVTALNDELNRIAETTSFGGNKLLNgthgtksfqigADNGEAVMLQLK 162
Cdd:PRK12687  86 gDSKSGLTALKAKLVAAREPG---IDRTKIQSEITAIQNDLKNTAGLAVFNGENWLS-----------VDSSPSSYNATK 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 163 DMRSDNAQMGGksyqTENAKDKDWNVQAgsndLKLSFTDNFGQAQEIDISAKAGddieelatyingqqdSVKASVTedgk 242
Cdd:PRK12687 152 SVVSSFTRVGG----TVAIKTIDVNIAK----LALYDTNGSSTTGILDKTVTVG---------------TATASVS---- 204

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384 243 lqmftgnnkvegevafsgslAGELGMqpgkdVTVDTIDVTSVGGAqesVAVIDAALKYVDSHRAELGAFQNRFDHAISNL 322
Cdd:PRK12687 205 --------------------SIDIHL-----LTDSATDLTKLDGY---IGIVDQALGSVTQASADLGATKTRIDSNSNFV 256

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 857906384 323 DNINENVNASKSRIKDTDFAKETTQMTKSQILSQASSSILAQAKQAPNSALSLL 376
Cdd:PRK12687 257 KSLRDAIDRGVGQLVDADMNAESTRLQALQTQQQLGIQALSIANQGSQSILSLF 310
PRK14692 PRK14692
flagellar hook-associated protein FlgL;
20-141 7.66e-04

flagellar hook-associated protein FlgL;


Pssm-ID: 173155 [Multi-domain]  Cd Length: 749  Bit Score: 41.48  E-value: 7.66e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 857906384  20 NANSAQQTSMERLASGSKINSAKDDAAGLQISNRLNVQSRGLDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLSLQS 99
Cdd:PRK14692  18 GGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQA 97

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 857906384 100 SNGSNSKSERVAIQEEVTALNDELNRIAeTTSFGGNKLLNGT 141
Cdd:PRK14692  98 ASDSNSQTSREAIAKELERIKESIVQLA-NTSVNGQYLFAGS 138
Flagellin_IN pfam07196
Flagellin hook IN motif; The function of this region is not clear, but it is found in many ...
 198-249 3.80e-03

Flagellin hook IN motif; The function of this region is not clear, but it is found in many flagellar hook proteins, including FliD homologs. It is normally repeated, but is also apparently seen as a singleton. A conserved IN is seen at the centre of the motif. The diversity of these motifs makes it likely that some members of the family are not identified.


Pssm-ID: 399878 [Multi-domain]  Cd Length: 55  Bit Score: 35.27  E-value: 3.80e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 857906384  198 SFTDNFGQAQEIDISAKAGDDIEELATYIN--GQQDSVKASVTED-GKLQMFTGN 249
Cdd:pfam07196   1 TLTINGVGGGGTDISVSAGDSLGDLADAINavSSKTGVSASIDTDtGRLVLTSTT 55
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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