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Conserved domains on  [gi|484399540|emb|CCW46007|]
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UBA domain-containing protein [Caenorhabditis elegans]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1764-2179 2.25e-120

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


:

Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 384.30  E-value: 2.25e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1764 VGMKNDGGTCYMNAMIQQLVHVPGLSRELIALqnidPQLRWGDNTAALLCELQRVFAQLNFAQCQAIVPEGLWKEFRFeP 1843
Cdd:cd02659     3 VGLKNQGATCYMNSLLQQLYMTPEFRNAVYSI----PPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSF-G 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1844 DMPLNTKQHHDAIDFYSILLDKCDNVLKKLELPPLFQNRFFGKYSYEKICYGCWHRYkSPDEEFNCISLALSG-DNLEEA 1922
Cdd:cd02659    78 WDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKNLFGGKLVNYIICKECPHES-EREEYFLDLQVAVKGkKNLEES 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1923 LENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDLVNNMIRKDNQLFRFPFEIDMTPYMTTSRH 2002
Cdd:cd02659   157 LDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLA 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2003 VPDehvqdlfdemlygngeadeapspphkngvaekpnlgsgsastpslesaqkkmfrrhrsstmrlsqsfantsGFDTPS 2082
Cdd:cd02659   237 KKE-----------------------------------------------------------------------GDSEKK 245
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2083 QQKPLIYELVGVLAHSGIATAGHYYSFIKERReefrdsphYNKWHHINDMIVSPMSFNNIEDLWYGGTFTQEGVFIGLDE 2162
Cdd:cd02659   246 DSESYIYELHGVLVHSGDAHGGHYYSYIKDRD--------DGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRA 317
                         410
                  ....*....|....*..
gi 484399540 2163 RVRHWNAYVLFYEKKRD 2179
Cdd:cd02659   318 FKRTTNAYMLFYERKSP 334
UBA smart00165
Ubiquitin associated domain; Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 ...
78-113 4.59e-06

Ubiquitin associated domain; Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.


:

Pssm-ID: 197551 [Multi-domain]  Cd Length: 37  Bit Score: 45.56  E-value: 4.59e-06
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 484399540     78 YQDNQDMLITMGFKSEEIDTALRLSNNDVEKAIQYL 113
Cdd:smart00165    1 DEEKIDQLLEMGFSREEALKALRAANGNVERAAEYL 36
 
Name Accession Description Interval E-value
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1764-2179 2.25e-120

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 384.30  E-value: 2.25e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1764 VGMKNDGGTCYMNAMIQQLVHVPGLSRELIALqnidPQLRWGDNTAALLCELQRVFAQLNFAQCQAIVPEGLWKEFRFeP 1843
Cdd:cd02659     3 VGLKNQGATCYMNSLLQQLYMTPEFRNAVYSI----PPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSF-G 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1844 DMPLNTKQHHDAIDFYSILLDKCDNVLKKLELPPLFQNRFFGKYSYEKICYGCWHRYkSPDEEFNCISLALSG-DNLEEA 1922
Cdd:cd02659    78 WDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKNLFGGKLVNYIICKECPHES-EREEYFLDLQVAVKGkKNLEES 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1923 LENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDLVNNMIRKDNQLFRFPFEIDMTPYMTTSRH 2002
Cdd:cd02659   157 LDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLA 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2003 VPDehvqdlfdemlygngeadeapspphkngvaekpnlgsgsastpslesaqkkmfrrhrsstmrlsqsfantsGFDTPS 2082
Cdd:cd02659   237 KKE-----------------------------------------------------------------------GDSEKK 245
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2083 QQKPLIYELVGVLAHSGIATAGHYYSFIKERReefrdsphYNKWHHINDMIVSPMSFNNIEDLWYGGTFTQEGVFIGLDE 2162
Cdd:cd02659   246 DSESYIYELHGVLVHSGDAHGGHYYSYIKDRD--------DGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRA 317
                         410
                  ....*....|....*..
gi 484399540 2163 RVRHWNAYVLFYEKKRD 2179
Cdd:cd02659   318 FKRTTNAYMLFYERKSP 334
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
1764-2174 8.06e-43

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 160.30  E-value: 8.06e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540  1764 VGMKNDGGTCYMNAMIQQLVHVPGLSRELIALQNIDPQLRWgDNTAALLCELQRVFAQLNFAQCQ-AIVPEGLWKEFR-F 1841
Cdd:pfam00443    1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRY-NKDINLLCALRDLFKALQKNSKSsSVSPKMFKKSLGkL 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540  1842 EPDmpLNTKQHHDAIDFYSILLDKCDNVLKKLEL---PPLFQNRFFGKYSYEKICYGCWHRYKSPDEEFNcISLALSGD- 1917
Cdd:pfam00443   80 NPD--FSGYKQQDAQEFLLFLLDGLHEDLNGNHStenESLITDLFRGQLKSRLKCLSCGEVSETFEPFSD-LSLPIPGDs 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540  1918 ------NLEEALENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDlvNNMIRKDNQLFRFPFEI 1991
Cdd:pfam00443  157 aelktaSLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLEL 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540  1992 DMTPYMTTSrhvpdehvqdlfdemlygngeadeapspphkngvaekpnlgsgsastpslesaqkkmfrrhrsstmrlsqs 2071
Cdd:pfam00443  235 DLSRYLAEE----------------------------------------------------------------------- 243
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540  2072 fantsgfDTPSQQKPLIYELVGVLAHSGIATAGHYYSFIKERREefrdsphyNKWHHINDMIVSPmsfnniedlwyggtf 2151
Cdd:pfam00443  244 -------LKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN--------NRWYKFDDEKVTE--------------- 293
                          410       420
                   ....*....|....*....|...
gi 484399540  2152 tqegvfIGLDERVRHWNAYVLFY 2174
Cdd:pfam00443  294 ------VDEETAVLSSSAYILFY 310
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
1764-2194 5.02e-26

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 118.05  E-value: 5.02e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1764 VGMKNDGGTCYMNAMIQQLVHVPGLSRELIALQNIDPQlrwGDNTAALLceLQRVFAQLNFAQCQAIVPEgLWKEFRFEP 1843
Cdd:COG5077   194 VGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPR---GRDSVALA--LQRLFYNLQTGEEPVDTTE-LTRSFGWDS 267
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1844 DMPLntkQHHDAIDFYSILLDKCDNVLKKLELPPLFQNRFFGKY-SYekicYGCWHR--YKSPDEEFNCISLALSG-DNL 1919
Cdd:COG5077   268 DDSF---MQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMkSY----IKCVNVnyESARVEDFWDIQLNVKGmKNL 340
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1920 EEALENFLAAHVMEGENAYHCEK---CDEKKTTLnrtsFLELPSTMTIQLKRFTYDLVNNMIRKDNQLFRFPFEIDMTPY 1996
Cdd:COG5077   341 QESFRRYIQVETLDGDNRYNAEKhglQDAKKGVI----FESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPF 416
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1997 MTTsrhvpdehvqdlfdemlygngEADEapspphkngvaekpnlgsgsastpslesaqkkmfrrhrsstmrlsqsfants 2076
Cdd:COG5077   417 LDR---------------------DADK---------------------------------------------------- 423
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2077 gfdtpSQQKPLIYELVGVLAHSGIATAGHYYSFIKERREefrdsphyNKWHHINDMIVSPMSFNNIEDLWYGGTFTQEGV 2156
Cdd:COG5077   424 -----SENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKD--------GRWYKFDDTRVTRATEKEVLEENFGGDHPYKDK 490
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 484399540 2157 FIGLDERVRHWNAYVLFYEKKRDEPTAL-------IPRHIIDRLN 2194
Cdd:COG5077   491 IRDHSGIKRFMSAYMLVYLRKSMLDDLLnpvaavdIPPHVEEVLS 535
UBA smart00165
Ubiquitin associated domain; Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 ...
78-113 4.59e-06

Ubiquitin associated domain; Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.


Pssm-ID: 197551 [Multi-domain]  Cd Length: 37  Bit Score: 45.56  E-value: 4.59e-06
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 484399540     78 YQDNQDMLITMGFKSEEIDTALRLSNNDVEKAIQYL 113
Cdd:smart00165    1 DEEKIDQLLEMGFSREEALKALRAANGNVERAAEYL 36
UBA2_spUBP14_like cd14297
UBA2 domain found in Schizosaccharomyces pombe ubiquitin carboxyl-terminal hydrolase 14 ...
84-113 3.70e-05

UBA2 domain found in Schizosaccharomyces pombe ubiquitin carboxyl-terminal hydrolase 14 (spUBP14) and similar proteins; spUBP14, also called deubiquitinating enzyme 14, UBA domain-containing protein 2, ubiquitin thioesterase 14, or ubiquitin-specific-processing protease 14, functions as a deubiquitinating enzyme that is involved in protein degradation in fission yeast. Members in this family contain two tandem ubiquitin-association (UBA) domains. This model corresponds to the UBA2 domain.


Pssm-ID: 270483 [Multi-domain]  Cd Length: 39  Bit Score: 42.85  E-value: 3.70e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 484399540   84 MLITMGFKSEEIDTALRLSNNDVEKAIQYL 113
Cdd:cd14297     6 QLVDMGFTEAQARKALRKTNNNVERAVDWL 35
UBA pfam00627
UBA/TS-N domain; This small domain is composed of three alpha helices. This family includes ...
77-113 3.81e-03

UBA/TS-N domain; This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin and the ubiquitination pathway. The structure of the UBA domain consists of a compact three helix bundle. This domain is found at the N terminus of EF-TS hence the name TS-N. The structure of EF-TS is known and this domain is implicated in its interaction with EF-TU. The domain has been found in non EF-TS proteins such as alpha-NAC and MJ0280.


Pssm-ID: 395502 [Multi-domain]  Cd Length: 37  Bit Score: 37.03  E-value: 3.81e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 484399540    77 QYQDNQDMLITMGFKSEEIDTALRLSNNDVEKAIQYL 113
Cdd:pfam00627    1 EDEEAIQRLVEMGFDREQVREALRATGNNVERAAEYL 37
 
Name Accession Description Interval E-value
peptidase_C19C cd02659
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1764-2179 2.25e-120

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239124 [Multi-domain]  Cd Length: 334  Bit Score: 384.30  E-value: 2.25e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1764 VGMKNDGGTCYMNAMIQQLVHVPGLSRELIALqnidPQLRWGDNTAALLCELQRVFAQLNFAQCQAIVPEGLWKEFRFeP 1843
Cdd:cd02659     3 VGLKNQGATCYMNSLLQQLYMTPEFRNAVYSI----PPTEDDDDNKSVPLALQRLFLFLQLSESPVKTTELTDKTRSF-G 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1844 DMPLNTKQHHDAIDFYSILLDKCDNVLKKLELPPLFQNRFFGKYSYEKICYGCWHRYkSPDEEFNCISLALSG-DNLEEA 1922
Cdd:cd02659    78 WDSLNTFEQHDVQEFFRVLFDKLEEKLKGTGQEGLIKNLFGGKLVNYIICKECPHES-EREEYFLDLQVAVKGkKNLEES 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1923 LENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDLVNNMIRKDNQLFRFPFEIDMTPYMTTSRH 2002
Cdd:cd02659   157 LDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLA 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2003 VPDehvqdlfdemlygngeadeapspphkngvaekpnlgsgsastpslesaqkkmfrrhrsstmrlsqsfantsGFDTPS 2082
Cdd:cd02659   237 KKE-----------------------------------------------------------------------GDSEKK 245
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2083 QQKPLIYELVGVLAHSGIATAGHYYSFIKERReefrdsphYNKWHHINDMIVSPMSFNNIEDLWYGGTFTQEGVFIGLDE 2162
Cdd:cd02659   246 DSESYIYELHGVLVHSGDAHGGHYYSYIKDRD--------DGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRA 317
                         410
                  ....*....|....*..
gi 484399540 2163 RVRHWNAYVLFYEKKRD 2179
Cdd:cd02659   318 FKRTTNAYMLFYERKSP 334
UCH pfam00443
Ubiquitin carboxyl-terminal hydrolase;
1764-2174 8.06e-43

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 425685 [Multi-domain]  Cd Length: 310  Bit Score: 160.30  E-value: 8.06e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540  1764 VGMKNDGGTCYMNAMIQQLVHVPGLSRELIALQNIDPQLRWgDNTAALLCELQRVFAQLNFAQCQ-AIVPEGLWKEFR-F 1841
Cdd:pfam00443    1 TGLVNLGNTCYMNSVLQSLFSIPPFRDYLLRISPLSEDSRY-NKDINLLCALRDLFKALQKNSKSsSVSPKMFKKSLGkL 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540  1842 EPDmpLNTKQHHDAIDFYSILLDKCDNVLKKLEL---PPLFQNRFFGKYSYEKICYGCWHRYKSPDEEFNcISLALSGD- 1917
Cdd:pfam00443   80 NPD--FSGYKQQDAQEFLLFLLDGLHEDLNGNHStenESLITDLFRGQLKSRLKCLSCGEVSETFEPFSD-LSLPIPGDs 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540  1918 ------NLEEALENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDlvNNMIRKDNQLFRFPFEI 1991
Cdd:pfam00443  157 aelktaSLQICFLQFSKLEELDDEEKYYCDKCGCKQDAIKQLKISRLPPVLIIHLKRFSYN--RSTWEKLNTEVEFPLEL 234
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540  1992 DMTPYMTTSrhvpdehvqdlfdemlygngeadeapspphkngvaekpnlgsgsastpslesaqkkmfrrhrsstmrlsqs 2071
Cdd:pfam00443  235 DLSRYLAEE----------------------------------------------------------------------- 243
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540  2072 fantsgfDTPSQQKPLIYELVGVLAHSGIATAGHYYSFIKERREefrdsphyNKWHHINDMIVSPmsfnniedlwyggtf 2151
Cdd:pfam00443  244 -------LKPKTNNLQDYRLVAVVVHSGSLSSGHYIAYIKAYEN--------NRWYKFDDEKVTE--------------- 293
                          410       420
                   ....*....|....*....|...
gi 484399540  2152 tqegvfIGLDERVRHWNAYVLFY 2174
Cdd:pfam00443  294 ------VDEETAVLSSSAYILFY 310
Peptidase_C19 cd02257
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ...
1765-2175 5.85e-38

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239072 [Multi-domain]  Cd Length: 255  Bit Score: 144.16  E-value: 5.85e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1765 GMKNDGGTCYMNAMIQQLVHvpglsrelialqnidpqlrwgdntaallcelqrvfaqlnfaqcqaivpeglwkefrfepd 1844
Cdd:cd02257     1 GLNNLGNTCYLNSVLQALFS------------------------------------------------------------ 20
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1845 mplntkQHHDAIDFYSILLDKCDNVLKKL--------ELPPLFQNRFFGKYSYEKICYGCWHRYKSpDEEFNCISLALSG 1916
Cdd:cd02257    21 ------EQQDAHEFLLFLLDKLHEELKKSskrtsdssSLKSLIHDLFGGKLESTIVCLECGHESVS-TEPELFLSLPLPV 93
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1917 D-----NLEEALENFLAAHVMEGENAYHCEKCdEKKTTLNRTSFLELPSTMTIQLKRFTYDLvNNMIRKDNQLFRFPFEI 1991
Cdd:cd02257    94 KglpqvSLEDCLEKFFKEEILEGDNCYKCEKK-KKQEATKRLKIKKLPPVLIIHLKRFSFNE-DGTKEKLNTKVSFPLEL 171
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1992 DMTPYMTtsrhvpdehvqdlfdemlygngeadeapspphkngvaekpnlgsgsastpslesaqkkmfrrhrsstmrlsqs 2071
Cdd:cd02257   172 DLSPYLS------------------------------------------------------------------------- 178
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2072 fanTSGFDTPSQQKPLIYELVGVLAHSG-IATAGHYYSFIKerreefrdSPHYNKWHHINDMIVSPMSFNNIEDLwyggt 2150
Cdd:cd02257   179 ---EGEKDSDSDNGSYKYELVAVVVHSGtSADSGHYVAYVK--------DPSDGKWYKFNDDKVTEVSEEEVLEF----- 242
                         410       420
                  ....*....|....*....|....*
gi 484399540 2151 ftqegvfigldeRVRHWNAYVLFYE 2175
Cdd:cd02257   243 ------------GSLSSSAYILFYE 255
Peptidase_C19L cd02668
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1765-2175 2.13e-36

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239133 [Multi-domain]  Cd Length: 324  Bit Score: 142.17  E-value: 2.13e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1765 GMKNDGGTCYMNAMIQQLVHVPGLSR--------ELIALQNIDPQLRWGDNTAalLCELQRVFAQLNFAQCQAIVPEGLW 1836
Cdd:cd02668     1 GLKNLGATCYVNSFLQLWFMNLEFRKavyecnstEDAELKNMPPDKPHEPQTI--IDQLQLIFAQLQFGNRSVVDPSGFV 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1837 KEFRfepdmpLNTKQHHDAIDFYSILLDKCDNVLKKL---ELPPLFQNRFFGKYSYEKICYGCWHRYKSPDEeFNCISLA 1913
Cdd:cd02668    79 KALG------LDTGQQQDAQEFSKLFLSLLEAKLSKSknpDLKNIVQDLFRGEYSYVTQCSKCGRESSLPSK-FYELELQ 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1914 LSGD-NLEEALENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDLVNNMIRKDNQLFRFPFEID 1992
Cdd:cd02668   152 LKGHkTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILD 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1993 MTPYMttsrhvpdehvqdlfdemlygngeadeAPSPPHKngvaekpnlgsgsastpslesaqkkmfrrhrsstmrlsqsf 2072
Cdd:cd02668   232 MGEYL---------------------------AESDEGS----------------------------------------- 243
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2073 antsgfdtpsqqkpLIYELVGVLAHSGI-ATAGHYYSFIKErreefrdsPHYNKWHHINDMIVSPMSFNNIEDlwyGGTF 2151
Cdd:cd02668   244 --------------YVYELSGVLIHQGVsAYSGHYIAHIKD--------EQTGEWYKFNDEDVEEMPGKPLKL---GNSE 298
                         410       420
                  ....*....|....*....|....*.
gi 484399540 2152 TQEGVFIGLDERVRHW--NAYVLFYE 2175
Cdd:cd02668   299 DPAKPRKSEIKKGTHSsrTAYMLVYK 324
Peptidase_C19E cd02661
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1765-2174 1.27e-31

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239126 [Multi-domain]  Cd Length: 304  Bit Score: 127.39  E-value: 1.27e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1765 GMKNDGGTCYMNAMIQQLVHVPGLSrelIALQNIDPQLRWGDNTAALLCELQRVFAQLNFAQCQAIVP-------EGLWK 1837
Cdd:cd02661     3 GLQNLGNTCFLNSVLQCLTHTPPLA---NYLLSREHSKDCCNEGFCMMCALEAHVERALASSGPGSAPrifssnlKQISK 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1838 EFRFepdmplntKQHHDAIDFYSILLDKCDNV----LKKLE-LPPLFQ-----NRFFGKYSYEKI----CYGCWHRYksp 1903
Cdd:cd02661    80 HFRI--------GRQEDAHEFLRYLLDAMQKAcldrFKKLKaVDPSSQettlvQQIFGGYLRSQVkclnCKHVSNTY--- 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1904 dEEFNCISLALSG-DNLEEALENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTydlvNNMIRKDN 1982
Cdd:cd02661   149 -DPFLDLSLDIKGaDSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFS----NFRGGKIN 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1983 QLFRFPFEIDMTPYMTTSRHVpdehvqdlfdemlygngeadeapspphkngvaekpnlgsgsastpslesaqkkmfrrhr 2062
Cdd:cd02661   224 KQISFPETLDLSPYMSQPNDG----------------------------------------------------------- 244
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2063 sstmrlsqsfantsgfdtpsqqkPLIYELVGVLAHSGIAT-AGHYYSFIKerreefrDSPhyNKWHHINDMIVSPMSFnn 2141
Cdd:cd02661   245 -----------------------PLKYKLYAVLVHSGFSPhSGHYYCYVK-------SSN--GKWYNMDDSKVSPVSI-- 290
                         410       420       430
                  ....*....|....*....|....*....|...
gi 484399540 2142 iedlwyggtftqegvfigldERVRHWNAYVLFY 2174
Cdd:cd02661   291 --------------------ETVLSQKAYILFY 303
COG5077 COG5077
Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, ...
1764-2194 5.02e-26

Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227409 [Multi-domain]  Cd Length: 1089  Bit Score: 118.05  E-value: 5.02e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1764 VGMKNDGGTCYMNAMIQQLVHVPGLSRELIALQNIDPQlrwGDNTAALLceLQRVFAQLNFAQCQAIVPEgLWKEFRFEP 1843
Cdd:COG5077   194 VGLRNQGATCYMNSLLQSLFFIAKFRKDVYGIPTDHPR---GRDSVALA--LQRLFYNLQTGEEPVDTTE-LTRSFGWDS 267
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1844 DMPLntkQHHDAIDFYSILLDKCDNVLKKLELPPLFQNRFFGKY-SYekicYGCWHR--YKSPDEEFNCISLALSG-DNL 1919
Cdd:COG5077   268 DDSF---MQHDIQEFNRVLQDNLEKSMRGTVVENALNGIFVGKMkSY----IKCVNVnyESARVEDFWDIQLNVKGmKNL 340
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1920 EEALENFLAAHVMEGENAYHCEK---CDEKKTTLnrtsFLELPSTMTIQLKRFTYDLVNNMIRKDNQLFRFPFEIDMTPY 1996
Cdd:COG5077   341 QESFRRYIQVETLDGDNRYNAEKhglQDAKKGVI----FESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPF 416
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1997 MTTsrhvpdehvqdlfdemlygngEADEapspphkngvaekpnlgsgsastpslesaqkkmfrrhrsstmrlsqsfants 2076
Cdd:COG5077   417 LDR---------------------DADK---------------------------------------------------- 423
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2077 gfdtpSQQKPLIYELVGVLAHSGIATAGHYYSFIKERREefrdsphyNKWHHINDMIVSPMSFNNIEDLWYGGTFTQEGV 2156
Cdd:COG5077   424 -----SENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKD--------GRWYKFDDTRVTRATEKEVLEENFGGDHPYKDK 490
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....*
gi 484399540 2157 FIGLDERVRHWNAYVLFYEKKRDEPTAL-------IPRHIIDRLN 2194
Cdd:COG5077   491 IRDHSGIKRFMSAYMLVYLRKSMLDDLLnpvaavdIPPHVEEVLS 535
Peptidase_C19R cd02674
A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1765-2175 3.00e-23

A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239139 [Multi-domain]  Cd Length: 230  Bit Score: 100.82  E-value: 3.00e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1765 GMKNDGGTCYMNAMIQQLVHvpglsrelialqnidpqlrwgdntaallcelqrvfaqlnfaqcqaivpeglwkefrfepd 1844
Cdd:cd02674     1 GLRNLGNTCYMNSILQCLSA------------------------------------------------------------ 20
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1845 mplntkQHHDAIDFYSILLDKCDNVLKKLelpplfqnrFFGKYSYEKICYGCwHRYKSPDEEFNCISLAL---SGD---- 1917
Cdd:cd02674    21 ------DQQDAQEFLLFLLDGLHSIIVDL---------FQGQLKSRLTCLTC-GKTSTTFEPFTYLSLPIpsgSGDapkv 84
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1918 NLEEALENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDlvNNMIRKDNQLFRFPFEI-DMTPY 1996
Cdd:cd02674    85 TLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFS--RGSTRKLTTPVTFPLNDlDLTPY 162
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1997 mttsrhvpdehvqdlfdemlygngeadeapspphkngvaekpnlgsgsastpslesaqkkmfrrhrsstmrlsqsfants 2076
Cdd:cd02674       --------------------------------------------------------------------------------
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2077 gFDTPSQQKPLIYELVGVLAHSGIATAGHYYSFIKerreefrdSPHYNKWHHINDMIVSPMSFNNIEDLwyggtftqegv 2156
Cdd:cd02674   163 -VDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCK--------NNETNDWYKFDDSRVTKVSESSVVSS----------- 222
                         410
                  ....*....|....*....
gi 484399540 2157 figldervrhwNAYVLFYE 2175
Cdd:cd02674   223 -----------SAYILFYE 230
Peptidase_C19H cd02664
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1765-2175 1.78e-20

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239129 [Multi-domain]  Cd Length: 327  Bit Score: 95.25  E-value: 1.78e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1765 GMKNDGGTCYMNAMIQQLVHVPGLSRELIALQnidpqLRWGDNTAALLCELQRVFAQLNFAQCQAIVPEglwkEFRFEPD 1844
Cdd:cd02664     1 GLINLGNTCYMNSVLQALFMAKDFRRQVLSLN-----LPRLGDSQSVMKKLQLLQAHLMHTQRRAEAPP----DYFLEAS 71
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1845 MP--LNTKQHHDAIDFYSILLDKCDnvlkklelpPLFQNRFFGKYSYEKICYGCwHRYKSPDEEFNCISLALSgdNLEEA 1922
Cdd:cd02664    72 RPpwFTPGSQQDCSEYLRYLLDRLH---------TLIEKMFGGKLSTTIRCLNC-NSTSARTERFRDLDLSFP--SVQDL 139
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1923 LENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDlvnnmirkdnqlfrfpfeidmtpymttsrh 2002
Cdd:cd02664   140 LNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYD------------------------------ 189
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2003 vPDEHV-QDLFDEMLYgngeadeapspphkNGVAEKPnlgsgsastpslesaqkkmFRRHRSSTMRLSQSFANTSGFDTP 2081
Cdd:cd02664   190 -QKTHVrEKIMDNVSI--------------NEVLSLP-------------------VRVESKSSESPLEKKEEESGDDGE 235
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2082 SQQKPLIYELVGVLAHSGIAT-AGHYYSFIK-----ERREEFRDSPHYNK-------WHHINDMIVSPMSFNNIEDlwyg 2148
Cdd:cd02664   236 LVTRQVHYRLYAVVVHSGYSSeSGHYFTYARdqtdaDSTGQECPEPKDAEendesknWYLFNDSRVTFSSFESVQN---- 311
                         410       420
                  ....*....|....*....|....*..
gi 484399540 2149 gtftqegvfigLDERVRHWNAYVLFYE 2175
Cdd:cd02664   312 -----------VTSRFPKDTPYILFYE 327
Peptidase_C19K cd02667
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1765-2175 4.50e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239132 [Multi-domain]  Cd Length: 279  Bit Score: 90.14  E-value: 4.50e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1765 GMKNDGGTCYMNAMIQQLVHVPGLsRELIalqnidpqlrwGDNTAALLCELQRvfaqlnfaqcqaivpeglwKEFRFepd 1844
Cdd:cd02667     1 GLSNLGNTCFFNAVMQNLSQTPAL-RELL-----------SETPKELFSQVCR-------------------KAPQF--- 46
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1845 mplNTKQHHDAIDFYSILLDKCDNVLKKLelpplfqnrFFGKYSYEKICYGCwHRYKSPDEEFNCISL-----ALSGDNL 1919
Cdd:cd02667    47 ---KGYQQQDSHELLRYLLDGLRTFIDSI---------FGGELTSTIMCESC-GTVSLVYEPFLDLSLprsdeIKSECSI 113
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1920 EEALENFLAAHVMEGENAYHCEKCDE-KKTTLnrtsFLELPSTMTIQLKRFTYDLVNNMiRKDNQLFRFPFEIDMTPYMT 1998
Cdd:cd02667   114 ESCLKQFTEVEILEGNNKFACENCTKaKKQYL----ISKLPPVLVIHLKRFQQPRSANL-RKVSRHVSFPEILDLAPFCD 188
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1999 TSRHVPDEhvqdlfdemlygngeadeapspphkngvaekpnlgsgsastpslesaqkkmfrrhrsstmrlsqsfantsgf 2078
Cdd:cd02667   189 PKCNSSED------------------------------------------------------------------------ 196
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2079 dtpsqQKPLIYELVGVLAHSGIATAGHYYSFIKERREEFRDSPHYN-------------KWHHINDMIVSPMSFnniedl 2145
Cdd:cd02667   197 -----KSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKskpaadeagpgsgQWYYISDSDVREVSL------ 265
                         410       420       430
                  ....*....|....*....|....*....|
gi 484399540 2146 wyggtftqegvfigldERVRHWNAYVLFYE 2175
Cdd:cd02667   266 ----------------EEVLKSEAYLLFYE 279
Peptidase_C19D cd02660
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1765-2174 5.60e-19

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239125 [Multi-domain]  Cd Length: 328  Bit Score: 90.89  E-value: 5.60e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1765 GMKNDGGTCYMNAMIQQLVHVPGLSRELIAlQNIDPQLRWGDNTAALLCELQRVFAqlNFAQCQAIVPEGL-------WK 1837
Cdd:cd02660     2 GLINLGATCFMNVILQALLHNPLLRNYFLS-DRHSCTCLSCSPNSCLSCAMDEIFQ--EFYYSGDRSPYGPinllylsWK 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1838 EFRfepdmPLNTKQHHDAIDFYSILLDK----CDNVLKKLELPP----LFQNRFFGKYSYEKICYGCWHRYKSPDEeFNC 1909
Cdd:cd02660    79 HSR-----NLAGYSQQDAHEFFQFLLDQlhthYGGDKNEANDEShcncIIHQTFSGSLQSSVTCQRCGGVSTTVDP-FLD 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1910 ISLALSGDN----------------LEEALENFLAAHVMeGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDL 1973
Cdd:cd02660   153 LSLDIPNKStpswalgesgvsgtptLSDCLDRFTRPEKL-GDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSL 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1974 vNNMIRKDNQLFRFPFEIDMTPYMTTSRHVPDehvqdlfdemlygngeadeapspphkngvaekpnlgsgsastpslesa 2053
Cdd:cd02660   232 -NKTSRKIDTYVQFPLELNMTPYTSSSIGDTQ------------------------------------------------ 262
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2054 qkkmfrrhrsstmrlsqsfantsgfDTPSQQKPLIYELVGVLAHSGIATAGHYYSFIKERREEfrdsphynkWHHINDMI 2133
Cdd:cd02660   263 -------------------------DSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQGDGQ---------WFKFDDAM 308
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|.
gi 484399540 2134 VSPMSfnniedlwyggtftqegvfiglDERVRHWNAYVLFY 2174
Cdd:cd02660   309 ITRVS----------------------EEEVLKSQAYLLFY 327
Peptidase_C19B cd02658
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1765-1971 2.84e-13

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239123 [Multi-domain]  Cd Length: 311  Bit Score: 73.51  E-value: 2.84e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1765 GMKNDGGTCYMNAMIQQLVHVPGLSRELIALQNIdPQLRWGDNTAALLCEL---------QRVFAQLNFAQCQAIVPEGL 1835
Cdd:cd02658     1 GLRNLGNSCYLNSVLQVLFSIPSFQWRYDDLENK-FPSDVVDPANDLNCQLikladgllsGRYSKPASLKSENDPYQVGI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1836 wKEFRFE-------PDmpLNTKQHHDAIDFYSILLDKCDNVLKKLELPPLFQNRFFGkySYEKICYGCWHRYKSPDEEFN 1908
Cdd:cd02658    80 -KPSMFKaligkghPE--FSTMRQQDALEFLLHLIDKLDRESFKNLGLNPNDLFKFM--IEDRLECLSCKKVKYTSELSE 154
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 484399540 1909 CISLALSGD---------------NLEEALENFLAAHVMEgenaYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTY 1971
Cdd:cd02658   155 ILSLPVPKDeatekeegelvyepvPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQL 228
Peptidase_C19G cd02663
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1765-2175 2.16e-11

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239128 [Multi-domain]  Cd Length: 300  Bit Score: 67.72  E-value: 2.16e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1765 GMKNDGGTCYMNAMIQQLVHvpglsrelialqnidpqlrwgdntAALLCELQRVFAQlnFAQCQAIVPEGLWKEF--RFE 1842
Cdd:cd02663     1 GLENFGNTCYCNSVLQALYF------------------------ENLLTCLKDLFES--ISEQKKRTGVISPKKFitRLK 54
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1843 PDMPL-NTKQHHDAIDFYSILLDKCDNVLKK--------------LELPP-------LFQnrffGKYSYEKICYGCwHRY 1900
Cdd:cd02663    55 RENELfDNYMHQDAHEFLNFLLNEIAEILDAerkaekanrklnnnNNAEPqptwvheIFQ----GILTNETRCLTC-ETV 129
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1901 KSPDEEFncisLALSGD-----NLEEALENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYdlvn 1975
Cdd:cd02663   130 SSRDETF----LDLSIDveqntSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKY---- 201
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1976 nmirkDNQLFRFpfeidmtpymttsrhvpdehvqdlfdemlygngeadeapspphkngvaekpnlgsgsastpslesaqK 2055
Cdd:cd02663   202 -----DEQLNRY-------------------------------------------------------------------I 209
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2056 KMFRR-HRSSTMRLSqsfaNTSGFDTPSQQkplIYELVGVLAHSGI-ATAGHYYSFIKerreefrdspHYNKWHHINDMI 2133
Cdd:cd02663   210 KLFYRvVFPLELRLF----NTTDDAENPDR---LYELVAVVVHIGGgPNHGHYVSIVK----------SHGGWLLFDDET 272
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 484399540 2134 VSPMSFNNIEDlWYGGTFTQEgvfigldervrhwNAYVLFYE 2175
Cdd:cd02663   273 VEKIDENAVEE-FFGDSPNQA-------------TAYVLFYQ 300
COG5533 COG5533
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
1765-2177 2.29e-11

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444284 [Multi-domain]  Cd Length: 284  Bit Score: 67.13  E-value: 2.29e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1765 GMKNDGGTCYMNAMIQQLV--------HVPGLSRELIALQNIDPqlrwGDNTAALLCELQRVFAQLnfaqcqaiVPEglw 1836
Cdd:COG5533     1 GLPNLGNTCFMNSVLQILAlylpkldeLLDDLSKELKVLKNVIR----KPEPDLNQEEALKLFTAL--------WSS--- 65
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1837 KEFRFEPDMPLNTKQhhDAIDFYSILLDKcdnvlkkLELPPLFQN---RFFGKYSYEKICYGCWHRY--KSPDEefncis 1911
Cdd:COG5533    66 KEHKVGWIPPMGSQE--DAHELLGKLLDE-------LKLDLVNSFtirIFKTTKDKKKTSTGDWFDIiiELPDQ------ 130
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1912 lalSGDNLEEALENFLAAhvMEGENAYHC---EKCDEKKTTLNR----TSFLELPSTMTIQLKRFTYDLVNNMIRKD-NQ 1983
Cdd:COG5533   131 ---TWVNNLKTLQEFIDN--MEELVDDETgvkAKENEELEVQAKqeyeVSFVKLPKILTIQLKRFANLGGNQKIDTEvDE 205
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1984 LFRFPFEIDmtpymttsrhvpdehvqdlfdemlygngeadeapspphkngvaekpnlgsgsastpslesaQKKMFRRHrs 2063
Cdd:COG5533   206 KFELPVKHD-------------------------------------------------------------QILNIVKE-- 222
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2064 stmrlsqsfantsgfdtpsqqkpLIYELVGVLAHSGIATAGHYYSFIKERreefrdsphyNKWHHINDMIVSPMSFNNIE 2143
Cdd:COG5533   223 -----------------------TYYDLVGFVLHQGSLEGGHYIAYVKKG----------GKWEKANDSDVTPVSEEEAI 269
                         410       420       430
                  ....*....|....*....|....*....|....
gi 484399540 2144 DLwyggtfTQEgvfigldervrhwNAYVLFYEKK 2177
Cdd:COG5533   270 NE------KAK-------------NAYLYFYERI 284
Peptidase_C19A cd02657
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
1765-2175 8.26e-10

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239122 [Multi-domain]  Cd Length: 305  Bit Score: 62.73  E-value: 8.26e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1765 GMKNDGGTCYMNAMIQQLVHVPGLsreLIALQNIDPQLRWGDNTAA-LLCELQRVFAQLNFAQcQAIVPEGLWKEFR--- 1840
Cdd:cd02657     1 GLTNLGNTCYLNSTLQCLRSVPEL---RDALKNYNPARRGANQSSDnLTNALRDLFDTMDKKQ-EPVPPIEFLQLLRmaf 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1841 --FEPDMPLNTKQHHDAIDFYSILLDKCDNVLKKLELPPLFQNRFFG-KYSYEKICYGCWHRYKSPDEEFNCISLALSGD 1917
Cdd:cd02657    77 pqFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGAGSKGSFIDQLFGiELETKMKCTESPDEEEVSTESEYKLQCHISIT 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1918 nleeALENFLAAHVMEGENayhcEKCDEKKTTLNRTS-------FLELPSTMTIQLKRFTYDLVNNMIRKDNQLFRFPFE 1990
Cdd:cd02657   157 ----TEVNYLQDGLKKGLE----EEIEKHSPTLGRDAiytktsrISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFE 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 1991 IDMTPYMTtsrhvpdehvqdlfdemlygngeadeapspphkngvaekpnlGSGsastpslesaqkkmfrrhrsstmrlsq 2070
Cdd:cd02657   229 LDLYELCT------------------------------------------PSG--------------------------- 239
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 484399540 2071 sfantsgfdtpsqqkplIYELVGVLAHSGI-ATAGHYYSFIKerreefrdSPHYNKWHHINDMIVSPMSFNNIEDLWYGG 2149
Cdd:cd02657   240 -----------------YYELVAVITHQGRsADSGHYVAWVR--------RKNDGKWIKFDDDKVSEVTEEDILKLSGGG 294
                         410       420
                  ....*....|....*....|....*.
gi 484399540 2150 TFtqegvFIgldervrhwnAYVLFYE 2175
Cdd:cd02657   295 DW-----HI----------AYILLYK 305
UBA smart00165
Ubiquitin associated domain; Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 ...
78-113 4.59e-06

Ubiquitin associated domain; Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.


Pssm-ID: 197551 [Multi-domain]  Cd Length: 37  Bit Score: 45.56  E-value: 4.59e-06
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 484399540     78 YQDNQDMLITMGFKSEEIDTALRLSNNDVEKAIQYL 113
Cdd:smart00165    1 DEEKIDQLLEMGFSREEALKALRAANGNVERAAEYL 36
UBA2_spUBP14_like cd14297
UBA2 domain found in Schizosaccharomyces pombe ubiquitin carboxyl-terminal hydrolase 14 ...
84-113 3.70e-05

UBA2 domain found in Schizosaccharomyces pombe ubiquitin carboxyl-terminal hydrolase 14 (spUBP14) and similar proteins; spUBP14, also called deubiquitinating enzyme 14, UBA domain-containing protein 2, ubiquitin thioesterase 14, or ubiquitin-specific-processing protease 14, functions as a deubiquitinating enzyme that is involved in protein degradation in fission yeast. Members in this family contain two tandem ubiquitin-association (UBA) domains. This model corresponds to the UBA2 domain.


Pssm-ID: 270483 [Multi-domain]  Cd Length: 39  Bit Score: 42.85  E-value: 3.70e-05
                          10        20        30
                  ....*....|....*....|....*....|
gi 484399540   84 MLITMGFKSEEIDTALRLSNNDVEKAIQYL 113
Cdd:cd14297     6 QLVDMGFTEAQARKALRKTNNNVERAVDWL 35
Peptidase_C19I cd02665
A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are ...
2083-2149 7.05e-05

A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.


Pssm-ID: 239130 [Multi-domain]  Cd Length: 228  Bit Score: 46.78  E-value: 7.05e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 484399540 2083 QQKPliYELVGVLAHSGIATAGHYYSFIKERreefrdspHYNKWHHINDMIVSPMSFNNIEDLWYGG 2149
Cdd:cd02665   160 QQVP--YELHAVLVHEGQANAGHYWAYIYKQ--------SRQEWEKYNDISVTESSWEEVERDSFGG 216
UBA cd14270
UBA domain found in proteins involved in ubiquitin-mediated proteolysis; The ...
83-111 1.81e-04

UBA domain found in proteins involved in ubiquitin-mediated proteolysis; The ubiquitin-associated (UBA) domains are commonly occurring sequence motifs found in proteins involved in ubiquitin-mediated proteolysis. They contribute to ubiquitin (Ub) binding or ubiquitin-like (UbL) domain binding. However, some kinds of UBA domains can only the bind UbL domain, but not the Ub domain. UBA domains are normally comprised of compact three-helix bundles which contain a conserved GF/Y-loop. They can bind polyubiquitin with high affinity. They also bind monoubiquitin and other proteins. Most UBA domain-containing proteins have one UBA domain, but some harbor two or three UBA domains.


Pssm-ID: 270456 [Multi-domain]  Cd Length: 30  Bit Score: 40.80  E-value: 1.81e-04
                          10        20
                  ....*....|....*....|....*....
gi 484399540   83 DMLITMGFKSEEIDTALRLSNNDVEKAIQ 111
Cdd:cd14270     2 AQLVEMGFSREQARRALRATNGDVEAAVE 30
UBA_UBP24 cd14286
UBA domain found in ubiquitin carboxyl-terminal hydrolase 24 (UBP24) and similar proteins; ...
79-114 1.12e-03

UBA domain found in ubiquitin carboxyl-terminal hydrolase 24 (UBP24) and similar proteins; UBP24, also called deubiquitinating enzyme 24, ubiquitin thioesterase 24, or ubiquitin-specific-processing protease 24, is a deubiquitinating protein that interacts with damage-specific DNA-binding protein 2 (DDB2) and regulates DDB2 stability. It may also play a role in the pathogenesis of Parkinson's disease (PD). UBP24 proteins contain an N-terminal ubiquitin-associated (UBA) domain and a C-terminal peptidase C19 domain.


Pssm-ID: 270472  Cd Length: 37  Bit Score: 38.58  E-value: 1.12e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 484399540   79 QDNQDMLITMGFKS-EEIDTALRLSNNDVEKAIQYLT 114
Cdd:cd14286     1 EEHVTTLLCMGFSDpEEIRKALRLAKNDLNEAVAILT 37
UBA1_NUB1_like cd14291
UBA1 domain found in NEDD8 ultimate buster 1 (NUB1) and similar proteins; NUB1, also called ...
84-113 2.58e-03

UBA1 domain found in NEDD8 ultimate buster 1 (NUB1) and similar proteins; NUB1, also called negative regulator of ubiquitin-like proteins 1, renal carcinoma antigen NY-REN-18, or protein BS4, is a NEDD8-interacting protein that can be induced by interferon. It functions as a strong post-transcriptional down-regulator of the NEDD8 expression and plays critical roles in regulating many biological events, such as cell growth, NF-kappaB signaling, and biological responses to hypoxia. NUB1 can also interact with aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1) which may function in the regulation of cell cycle progression. NUB1 contains three ubiquitin-associated domains (UBA), a bipartite nuclear localization signal (NLS) and a PEST motif. This model corresponds to UBA1 domain.


Pssm-ID: 270477 [Multi-domain]  Cd Length: 36  Bit Score: 37.81  E-value: 2.58e-03
                          10        20        30
                  ....*....|....*....|....*....|
gi 484399540   84 MLITMGFKSEEIDTALRLSNNDVEKAIQYL 113
Cdd:cd14291     7 QLMEMGFSEAEARLALRACNGNVERAVDYI 36
UCH_1 pfam13423
Ubiquitin carboxyl-terminal hydrolase;
2088-2131 3.51e-03

Ubiquitin carboxyl-terminal hydrolase;


Pssm-ID: 463872 [Multi-domain]  Cd Length: 305  Bit Score: 42.26  E-value: 3.51e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 484399540  2088 IYELVGVLAH-SGIATAGHYYSFIKERREEFRDSPHyNKWHHIND 2131
Cdd:pfam13423  259 KYELRGVVVHiGDSGTSGHLVSFVKVADSELEDPTE-SQWYLFND 302
UBA pfam00627
UBA/TS-N domain; This small domain is composed of three alpha helices. This family includes ...
77-113 3.81e-03

UBA/TS-N domain; This small domain is composed of three alpha helices. This family includes the previously defined UBA and TS-N domains. The UBA-domain (ubiquitin associated domain) is a novel sequence motif found in several proteins having connections to ubiquitin and the ubiquitination pathway. The structure of the UBA domain consists of a compact three helix bundle. This domain is found at the N terminus of EF-TS hence the name TS-N. The structure of EF-TS is known and this domain is implicated in its interaction with EF-TU. The domain has been found in non EF-TS proteins such as alpha-NAC and MJ0280.


Pssm-ID: 395502 [Multi-domain]  Cd Length: 37  Bit Score: 37.03  E-value: 3.81e-03
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 484399540    77 QYQDNQDMLITMGFKSEEIDTALRLSNNDVEKAIQYL 113
Cdd:pfam00627    1 EDEEAIQRLVEMGFDREQVREALRATGNNVERAAEYL 37
UBP12 COG5560
Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];
1919-1996 4.32e-03

Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227847 [Multi-domain]  Cd Length: 823  Bit Score: 42.56  E-value: 4.32e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 484399540 1919 LEEALENFLAAHVMEGENAYHCEKCDEKKTTLNRTSFLELPSTMTIQLKRFTYDLVNNMIRKDnqLFRFP-FEIDMTPY 1996
Cdd:COG5560   677 LQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDD--LVEYPiDDLDLSGV 753
UBA2_scUBP14_like cd14298
UBA2 domain found in Saccharomyces cerevisiae ubiquitin carboxyl-terminal hydrolase 14 ...
83-113 6.37e-03

UBA2 domain found in Saccharomyces cerevisiae ubiquitin carboxyl-terminal hydrolase 14 (scUBP14) and similar proteins; scUBP14, also called deubiquitinating enzyme 14, glucose-induced degradation protein 6, ubiquitin thioesterase 14, or ubiquitin-specific-processing protease 14, is the yeast ortholog of human Isopeptidase T (USP5), a deubiquitinating enzyme known to bind the 29-linked polyubiquitin chains. scUBP14 has been identified as a K29-linked polyubiquitin binding protein as well. It is involved in K29-linked polyubiquitin metabolism by binding to the 29-linked Ub4 resin and serving as an internal positive control in budding yeast. Members in this family contain two tandem ubiquitin-association (UBA) domains. This model corresponds to the UBA2 domain.


Pssm-ID: 270484 [Multi-domain]  Cd Length: 38  Bit Score: 36.67  E-value: 6.37e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 484399540   83 DMLITMGFKSEEIDTALRLSNNDVEKAIQYL 113
Cdd:cd14298     5 AQLVSMGFDPEVARKALILTNGNVERAIEWL 35
UBA2_UBAP1_like cd14316
UBA2 domain found in ubiquitin-associated protein 1 (UBAP-1) and similar proteins; UBAP-1, ...
81-114 8.61e-03

UBA2 domain found in ubiquitin-associated protein 1 (UBAP-1) and similar proteins; UBAP-1, also called nasopharyngeal carcinoma-associated gene 20 protein, is a ubiquitously expressed protein that may play an important role in the ubiquitin pathway and cell progression. It co-localizes with TDP-43 proteins in neuronal cytoplasmic inclusions and acts as a genetic risk factor for frontotemporal lobar degeneration (FTLD). Moreover, UBAP-1, together with VPS37A, forms an endosome-specific endosomal sorting complexes I required for transport (ESCRT-I) complex that displays a restricted cellular function, ubiquitin-dependent endosomal sorting and multivesicular body (MVB) biogenesis. UBAP-1 contains an N-terminal UBAP-1-MVB12-associated (UMA) domain, and two tandem ubiquitin-associated (UBA) domains that may be responsible for the binding of ubiquitin-conjugating enzymes. This model corresponds to UBA2 domain.


Pssm-ID: 270501  Cd Length: 37  Bit Score: 36.35  E-value: 8.61e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 484399540   81 NQDMLITMGFKSEEIDTALRLSNNDVEKAIQYLT 114
Cdd:cd14316     4 LLNQLHELGFPEDKIKEALLKHNNDRDKALDELV 37
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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