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Conserved domains on  [gi|528294937|emb|CCU79041|]
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50S ribosomal protein L27 [Blumeria hordei DH14]

Protein Classification

bL27 family ribosomal protein( domain architecture ID 10470195)

bL27 family ribosomal protein such as mitochondrial 39S ribosomal protein L27 from vertebrates and 54S ribosomal protein L27 from fungi

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
49-129 3.57e-37

Ribosomal L27 protein;


:

Pssm-ID: 460025  Cd Length: 77  Bit Score: 125.93  E-value: 3.57e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528294937   49 ASHNQQSSHHQKKDGPGKRLGAKKSGEEHVIPGNIIFRQRGTHWFPGENAGMGRDHTIFSKVDGYVKYYkdplKHPKRQY 128
Cdd:pfam01016   1 AHKKGGGSTRNGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYVKFE----RKPKRKY 76


                  .
gi 528294937  129 I 129
Cdd:pfam01016  77 V 77
 
Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
49-129 3.57e-37

Ribosomal L27 protein;


Pssm-ID: 460025  Cd Length: 77  Bit Score: 125.93  E-value: 3.57e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528294937   49 ASHNQQSSHHQKKDGPGKRLGAKKSGEEHVIPGNIIFRQRGTHWFPGENAGMGRDHTIFSKVDGYVKYYkdplKHPKRQY 128
Cdd:pfam01016   1 AHKKGGGSTRNGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYVKFE----RKPKRKY 76


                  .
gi 528294937  129 I 129
Cdd:pfam01016  77 V 77
rpmA PRK05435
50S ribosomal protein L27; Validated
 62-131 2.31e-29

50S ribosomal protein L27; Validated


Pssm-ID: 235464  Cd Length: 82  Bit Score: 105.88  E-value: 2.31e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528294937  62 DGPGKRLGAKKSGEEHVIPGNIIFRQRGTHWFPGENAGMGRDHTIFSKVDGYVKYYKdplKHPKRQYIGV 131
Cdd:PRK05435  15 DSESKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFER---KGRNRKYVSV 81
RpmA COG0211
Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 ...
 61-131 1.37e-28

Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439981  Cd Length: 82  Bit Score: 103.97  E-value: 1.37e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528294937  61 KDGPGKRLGAKKSGEEHVIPGNIIFRQRGTHWFPGENAGMGRDHTIFSKVDGYVKYYKdplKHPKRQYIGV 131
Cdd:COG0211   14 RDSNSKRLGVKRFGGQKVKAGNIIVRQRGTKFHPGKNVGMGKDHTLFALVDGVVKFER---KGKGRKFVSV 81
L27 TIGR00062
ribosomal protein L27; Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have ...
 49-132 4.34e-25

ribosomal protein L27; Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272882 [Multi-domain]  Cd Length: 84  Bit Score: 95.19  E-value: 4.34e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528294937   49 ASHNQQSSHHQKKDGPGKRLGAKKSGEEHVIPGNIIFRQRGTHWFPGENAGMGRDHTIFSKVDGYVKYYKDPlKHPKRQY 128
Cdd:TIGR00062   2 ATKKGVGSTKNGRDSAAKRLGVKKAGGQFVRAGSIIVRQRGTKFHPGENVGMGKDHTLFALSDGVVKFELKG-FHRKRKF 80


                  ....
gi 528294937  129 IGVA 132
Cdd:TIGR00062  81 VSVV 84
 
Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
49-129 3.57e-37

Ribosomal L27 protein;


Pssm-ID: 460025  Cd Length: 77  Bit Score: 125.93  E-value: 3.57e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528294937   49 ASHNQQSSHHQKKDGPGKRLGAKKSGEEHVIPGNIIFRQRGTHWFPGENAGMGRDHTIFSKVDGYVKYYkdplKHPKRQY 128
Cdd:pfam01016   1 AHKKGGGSTRNGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYVKFE----RKPKRKY 76


                  .
gi 528294937  129 I 129
Cdd:pfam01016  77 V 77
rpmA PRK05435
50S ribosomal protein L27; Validated
 62-131 2.31e-29

50S ribosomal protein L27; Validated


Pssm-ID: 235464  Cd Length: 82  Bit Score: 105.88  E-value: 2.31e-29
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528294937  62 DGPGKRLGAKKSGEEHVIPGNIIFRQRGTHWFPGENAGMGRDHTIFSKVDGYVKYYKdplKHPKRQYIGV 131
Cdd:PRK05435  15 DSESKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFER---KGRNRKYVSV 81
RpmA COG0211
Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 ...
 61-131 1.37e-28

Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439981  Cd Length: 82  Bit Score: 103.97  E-value: 1.37e-28
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 528294937  61 KDGPGKRLGAKKSGEEHVIPGNIIFRQRGTHWFPGENAGMGRDHTIFSKVDGYVKYYKdplKHPKRQYIGV 131
Cdd:COG0211   14 RDSNSKRLGVKRFGGQKVKAGNIIVRQRGTKFHPGKNVGMGKDHTLFALVDGVVKFER---KGKGRKFVSV 81
L27 TIGR00062
ribosomal protein L27; Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have ...
 49-132 4.34e-25

ribosomal protein L27; Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272882 [Multi-domain]  Cd Length: 84  Bit Score: 95.19  E-value: 4.34e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 528294937   49 ASHNQQSSHHQKKDGPGKRLGAKKSGEEHVIPGNIIFRQRGTHWFPGENAGMGRDHTIFSKVDGYVKYYKDPlKHPKRQY 128
Cdd:TIGR00062   2 ATKKGVGSTKNGRDSAAKRLGVKKAGGQFVRAGSIIVRQRGTKFHPGENVGMGKDHTLFALSDGVVKFELKG-FHRKRKF 80


                  ....
gi 528294937  129 IGVA 132
Cdd:TIGR00062  81 VSVV 84
rpl27 CHL00121
ribosomal protein L27; Reviewed
 61-123 1.92e-17

ribosomal protein L27; Reviewed


Pssm-ID: 214370  Cd Length: 86  Bit Score: 75.05  E-value: 1.92e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 528294937  61 KDGPGKRLGAKKSGEEHVIPGNIIFRQRGTHWFPGENAGMGRDHTIFSKVDGYVKYYKDPLKH 123
Cdd:CHL00121  14 RDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYALIDGFVKFKKKNKKQ 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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