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Conserved domains on  [gi|332617623|emb|CCA78370|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

chlorophyll a-b binding protein( domain architecture ID 10010583)

chlorophyll a-b binding protein is a component of the light-harvesting complex (LHC) that functions as a light receptor; it captures and delivers excitation energy to photosystems with which it is closely associated

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 3-265 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


:

Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 550.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623   3 TSAIQQSSFAGQTALKPSSDLIQKVGvlgGGRVTMRRTVKST--PQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWD 80
Cdd:PLN00025   1 AMALSSTAFAGQAALKPPNELSRKVG---NGRVTMRKTVAKAagSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  81 TAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI 160
Cdd:PLN00025  78 TAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAI 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 161 WAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Cdd:PLN00025 158 WACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 237

                        250       260
                 ....*....|....*....|....*
gi 332617623 241 NLFDHLADPVANNAWSYATNFVPGK 265
Cdd:PLN00025 238 NLADHLADPVANNAWAYATNFVPGK 262
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 3-265 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 550.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623   3 TSAIQQSSFAGQTALKPSSDLIQKVGvlgGGRVTMRRTVKST--PQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWD 80
Cdd:PLN00025   1 AMALSSTAFAGQAALKPPNELSRKVG---NGRVTMRKTVAKAagSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  81 TAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI 160
Cdd:PLN00025  78 TAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAI 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 161 WAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Cdd:PLN00025 158 WACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 237

                        250       260
                 ....*....|....*....|....*
gi 332617623 241 NLFDHLADPVANNAWSYATNFVPGK 265
Cdd:PLN00025 238 NLADHLADPVANNAWAYATNFVPGK 262
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
66-232 3.02e-63

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 195.60  E-value: 3.02e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623   66 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKfGEAVWFKAGSQIFseggldy 145
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  146 lgnpnliHAQSILAI-WAVQVVLMGFIEGYRIGGG---PLGEGLDPLYPGG-AFDPLNLA-EDPEAFSELKVKELKNGRL 219
Cdd:pfam00504  74 -------HAQSVPTLlALQILLLMGFLELARWQGGkapGLGGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGRL 146

                         170
                  ....*....|...
gi 332617623  220 AMFSMFGFFVQAI 232
Cdd:pfam00504 147 AMIAFLGFFVQEL 159
 
Name Accession Description Interval E-value
PLN00025 PLN00025
photosystem II light harvesting chlorophyll a/b binding protein; Provisional
 3-265 0e+00

photosystem II light harvesting chlorophyll a/b binding protein; Provisional


Pssm-ID: 215033 [Multi-domain]  Cd Length: 262  Bit Score: 550.89  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623   3 TSAIQQSSFAGQTALKPSSDLIQKVGvlgGGRVTMRRTVKST--PQSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWD 80
Cdd:PLN00025   1 AMALSSTAFAGQAALKPPNELSRKVG---NGRVTMRKTVAKAagSGSIWYGPDRPKYLGPFSGETPSYLTGEFPGDYGWD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  81 TAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAI 160
Cdd:PLN00025  78 TAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAI 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 161 WAVQVVLMGFIEGYRIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240
Cdd:PLN00025 158 WACQVVLMGAVEGYRVNGGPLGEGLDPLYPGGSFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 237

                        250       260
                 ....*....|....*....|....*
gi 332617623 241 NLFDHLADPVANNAWSYATNFVPGK 265
Cdd:PLN00025 238 NLADHLADPVANNAWAYATNFVPGK 262
PLN00171 PLN00171
photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
 46-258 6.18e-79

photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional


Pssm-ID: 215088  Cd Length: 324  Bit Score: 241.24  E-value: 6.18e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  46 QSIWYGPDRPKYLGPFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNG-VK 124
Cdd:PLN00171 100 ESFWYGEERPRWLGPIPYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGaVH 179

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 125 FGEAVWFKAGSQIFSEGGLDYLGNPNL--IHAQSILAIWAVQVVLMGFIEGYRIGGGplgEGLDPL---------YPGGA 193
Cdd:PLN00171 180 FAEPVWWRVGYAKLQGDTLDYLGIPGLhiAGSQGVIVIAICQALLMVGPEYARYCGI---EALEPLgiylpgdinYPGGA 256

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 332617623 194 -FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYA 258
Cdd:PLN00171 257 lFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNLVDHLSDPLHNNLLSSL 322
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
66-232 3.02e-63

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 195.60  E-value: 3.02e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623   66 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKfGEAVWFKAGSQIFseggldy 145
Cdd:pfam00504   2 PAYLDGSLPGDYGFDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGG-NEPVWFEAGAVAL------- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  146 lgnpnliHAQSILAI-WAVQVVLMGFIEGYRIGGG---PLGEGLDPLYPGG-AFDPLNLA-EDPEAFSELKVKELKNGRL 219
Cdd:pfam00504  74 -------HAQSVPTLlALQILLLMGFLELARWQGGkapGLGGGGDRGYPGGfGFDPLGLAkKDPETLAELKLKELKNGRL 146

                         170
                  ....*....|...
gi 332617623  220 AMFSMFGFFVQAI 232
Cdd:pfam00504 147 AMIAFLGFFVQEL 159
PLN00048 PLN00048
photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
 51-253 7.84e-51

photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional


Pssm-ID: 177680 [Multi-domain]  Cd Length: 262  Bit Score: 167.34  E-value: 7.84e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  51 GPDRPKYLGpfSENTPSYLTGEYPGDYGWDTAGLSaDPET---FAKNREL---EVIHSRWAMLGALGCTFPEILSKNGVK 124
Cdd:PLN00048  39 GADRQLWFA--SKQSLSYLDGTLPGDFGFDPLGLS-DPEGaggFIEPQWLaygEVINGRFAMLGAAGAIAPEILGKAGLI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 125 FGEA--VWFKAGSqIFSEGGLDYLGNPnlihaqsiLAIWAVQVVLMGFIEGYRIGG----GPLGE----GL--------D 186
Cdd:PLN00048 116 PQETalPWFQSGV-IPPAGTYDYWADP--------YTLFVLEMALMGFAEHRRAQDyykpGSMGKqyflGLekglggsgN 186

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 332617623 187 PLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
Cdd:PLN00048 187 PAYPGGPfFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLLDHLADPVNNN 254
PLN00147 PLN00147
light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
 1-253 3.14e-47

light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional


Pssm-ID: 215076 [Multi-domain]  Cd Length: 252  Bit Score: 157.73  E-value: 3.14e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623   1 MATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTvkstpqsiwygpDRPKYLGPFseNTPSYLTGEYPGDYGWD 80
Cdd:PLN00147   4 MAGGTTGGFLHQPRDSSSHCTRSISSVAASSGGINPVVAQ------------ERPTWLPGL--DPPPHLDGTLAGDFGFD 69

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  81 TAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKfGEAVWFKAGSQIFsegglDYlgnpnlihaQSILAI 160
Cdd:PLN00147  70 PLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR-NLPVWYEAGAVKF-----EF---------ASTRTL 134

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 161 WAVQVVLMGFIEGYR----------------IGGGPLGEGLDPLYPGGA-FDPLNLAEDPEAFSELKVKELKNGRLAMFS 223
Cdd:PLN00147 135 FVVQLLLMGFAETKRymdfvspgsqakegsfFGLEAALEGLEPGYPGGPlFNPLGLAKDIENAHDWKLKEIKNGRLAMVA 214

                        250       260       270
                 ....*....|....*....|....*....|
gi 332617623 224 MFGFFVQAIVTGKGPIENLFDHLADPVANN 253
Cdd:PLN00147 215 MLGFFVQASVTHTGPIDNLLTHLSDPWHKT 244
PLN00099 PLN00099
light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
 29-253 6.21e-44

light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional


Pssm-ID: 177717  Cd Length: 243  Bit Score: 149.02  E-value: 6.21e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  29 VLGGGRVTMrrtvkstpqSIWYGPDRPKylgpfsentPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLG 108
Cdd:PLN00099  35 ANGSSRVTM---------SADWMPGQPR---------PPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLA 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 109 ALGCTFPEILskngvkfGEAVWFKAGSQIFSEGG-LDYLGNPnlIHAQSILAIWAVQVVLMGFIEGYRigggplGEGLDP 187
Cdd:PLN00099  97 VPGILVPEAL-------GLGNWVKAQEWAAIPGGqATYLGNP--VPWGTLPTILAIEFLAIAFVEHQR------SMEKDP 161

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 188 ---LYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLFDHLADPVANN 253
Cdd:PLN00099 162 ekkKYPGGAFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVqQSAYPGTGPLENLATHLADPWHNN 231
PLN00097 PLN00097
photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
 3-253 3.08e-42

photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional


Pssm-ID: 165670 [Multi-domain]  Cd Length: 244  Bit Score: 144.77  E-value: 3.08e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623   3 TSAIQQSSFAGqtaLKPSSDLIQKVGVLGGGRVTMRrtvkstPQSIWYGPDRPKYLgPFSEnTPSYLTGEYPGDYGWDTA 82
Cdd:PLN00097   2 ASIMAIQLAAG---LKQKSRTVRPRGVASKARASRG------PGAVAAAADRPTWL-PGKA-AAAHLDGSLPCDYGFDPL 70

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  83 GLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKfgeavwfkagsqifseggldylGNPNLIHAQSILAIWA 162
Cdd:PLN00097  71 NLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMA----------------------DLPNWIDAAKWDGYWA 128

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 163 -------VQVVLMGFIEGYRIGG--GPLGEGLDPL-------------YPGGAFDPLNLAEDPEAFSELKVKELKNGRLA 220
Cdd:PLN00097 129 gagplffIQMAMFNWAEIRRWQDmkAPGSMNEDPLfgankgdtntdvgYPKGLFDKFGWAKDEKKAAELKLKEIANGRLA 208

                        250       260       270
                 ....*....|....*....|....*....|...
gi 332617623 221 MFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
Cdd:PLN00097 209 MLAFLGCCAQAIQTGTGPVDNLFSHLADPGHNG 241
PLN00187 PLN00187
photosystem II light-harvesting complex II protein Lhcb4; Provisional
 2-250 7.03e-41

photosystem II light-harvesting complex II protein Lhcb4; Provisional


Pssm-ID: 177781  Cd Length: 286  Bit Score: 142.24  E-value: 7.03e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623   2 ATSAIQQSSFAGQ--TALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSiwyGPDRPKYLgPfSENTPSYLTGEYPGDYGW 79
Cdd:PLN00187   1 TAAAAAASSFMGTrvPDVASNSGRIVARFGFGKKKKAAKKAKKKSSKV---GADRPLWF-P-GAKAPEWLDGSLVGDYGF 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  80 DTAGLSADPE-----------TFAKN--------------------------------RELEVIHSRWAMLGALGCTFPE 116
Cdd:PLN00187  76 DPFGLGKPAEylqfdldsldqNLAKNlagdvigtrteaseikstpfqpysevfglqrfRECELIHGRWAMLATLGALSVE 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 117 ILSknGVkfgeaVWFKAGSQIFSEGGlDYLGNPnLIHAQSILaIWaVQVVLMGFIEGYRigggplGEGLDP---LYPGGA 193
Cdd:PLN00187 156 ALT--GV-----TWQDAGKVELVDGS-SYLGQP-LPFSITTL-IW-IEVLVIGYIEFQR------NAELDPekrLYPGGK 218

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 332617623 194 -FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPV 250
Cdd:PLN00187 219 fFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 276
PLN00098 PLN00098
light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
 51-260 9.55e-40

light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional


Pssm-ID: 177716  Cd Length: 267  Bit Score: 138.89  E-value: 9.55e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  51 GPDRPKYLgPFSeNTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGvkFGEAV- 129
Cdd:PLN00098  59 PPDRPLWF-PGS-SPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLG--FIENFs 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 130 WFKAGSQifsegglDYLGNPNlihaqsilAIWAVQVVLMGFIEGYRIGG--GPLGEGLDPL------------YPGGA-F 194
Cdd:PLN00098 135 WYDAGAR-------EYFADPT--------TLFVVQMVLMGWAEGRRWADliKPGCVDIEPKlpnktnpkpdvgYPGGLwF 199

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 332617623 195 DPLNLAE-DPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYATN 260
Cdd:PLN00098 200 DPMMWGRgSPEPVMVLRTKEIKNGRLAMLAFVGFCFQAVYTGEGPIENLMAHLADPGHCNVFSAFTS 266
PLN00101 PLN00101
Photosystem I light-harvesting complex type 4 protein; Provisional
 1-252 6.16e-35

Photosystem I light-harvesting complex type 4 protein; Provisional


Pssm-ID: 215055 [Multi-domain]  Cd Length: 250  Bit Score: 125.80  E-value: 6.16e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623   1 MATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGrVTMRRTVKSTPQSIWYGPDRPKYLGPFSenTPSYLTGEYPGDYGWD 80
Cdd:PLN00101   1 MATVTTQASAAVFRPCSSKSRFLSGSSSKLNRE-LSFKPMPSSATRSFKVEAKKGEWLPGLA--SPGYLNGSLPGDNGFD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  81 TAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVkFGEAVWFKAGSQifsegglDYLGNPNlihaqsilAI 160
Cdd:PLN00101  78 PLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGI-INAPQWYDAGKA-------EYFASSS--------TL 141

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 161 WAVQVVLMGFIEGYRIGG--GPLGEGLDPL------------YPGGAFDPLNLAEDPEAfselKVKELKNGRLAMFSMFG 226
Cdd:PLN00101 142 FVIEFILFHYVEIRRWQDikNPGSVNQDPIfkqyslppnevgYPGGIFNPLNFAPTEEA----KEKELANGRLAMLAFLG 217

                        250       260
                 ....*....|....*....|....*.
gi 332617623 227 FFVQAIVTGKGPIENLFDHLADPVAN 252
Cdd:PLN00101 218 FVVQHNVTGKGPFENLLQHLSDPWHN 243
PLN00100 PLN00100
light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
 33-253 3.84e-34

light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional


Pssm-ID: 215054  Cd Length: 246  Bit Score: 123.45  E-value: 3.84e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  33 GRVTMRRTVKSTPQS---IWYGPDRPkylgpfsentPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGA 109
Cdd:PLN00100  19 GVSTTRRPRVRVAARarpMWYPGATA----------PKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAAT 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 110 LGCTFPEILskngvkfGEAVWFKAGSQIFsegGLDylgNPNLIhaqsilaiwAVQVVLMGFIEGYRIGG-GPLGE-GLDP 187
Cdd:PLN00100  89 AGILFTDAV-------GLPKFWEAGAEKY---GLD---LQTLV---------LIQVVVMAVLEAARYRGfMKTGEsGVLS 146

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 332617623 188 LYPggaFDPLNLAEDpeafsELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANN 253
Cdd:PLN00100 147 FFP---FDPTGMDSP-----EMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLKAHMANPGHVN 204
PLN00170 PLN00170
photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
 1-242 9.98e-17

photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional


Pssm-ID: 215087 [Multi-domain]  Cd Length: 255  Bit Score: 77.28  E-value: 9.98e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623   1 MATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTV----KSTPQSIWYgpdrPKYLGPFSENTPSYLTGEYPGD 76
Cdd:PLN00170   2 AAATSGAVLNGLGSSFLTGGKRSLALLVGTGAAKVGARTLLvvaaAAQPKKSWI----PAVKGGGNLVDPEWLDGSLPGD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  77 YGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSknGVKfgeavWFKAGSQifseggldylgnPNLIHAQS 156
Cdd:PLN00170  78 YGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP-----WFEAGAD------------PGAIAPFS 138

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 157 ILAIWAVQVVLMGFIEGYRIGG--GPLGEGL------------------DPLYPGGA-FDPLNLA---------EDPEAF 206
Cdd:PLN00170 139 FGSLLGTQLLLMGWVESKRWVDffNPDSQSVewatpwsrtaenfanatgLQGYPGGKfFDPLGLAgtvkdgvyiPDFEKL 218

                        250       260       270
                 ....*....|....*....|....*....|....*.
gi 332617623 207 SELKVKELKNGRLAMFSMFGFFVQAiVTGKGPIENL 242
Cdd:PLN00170 219 ERLKLAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 253
Chloroa_b-bind pfam00504
Chlorophyll A-B binding protein;
194-262 2.62e-06

Chlorophyll A-B binding protein;


Pssm-ID: 459836 [Multi-domain]  Cd Length: 159  Bit Score: 46.15  E-value: 2.62e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 332617623  194 FDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWSYATNFV 262
Cdd:pfam00504  15 FDPLGLSADPETFKRYREAELKHGRWAMLAVLGALVPEALGKLGGGNEPVWFEAGAVALHAQSVPTLLA 83
PLN00089 PLN00089
fucoxanthin-chlorophyll a/c binding protein; Provisional
 44-237 8.91e-06

fucoxanthin-chlorophyll a/c binding protein; Provisional


Pssm-ID: 177710 [Multi-domain]  Cd Length: 209  Bit Score: 45.44  E-value: 8.91e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  44 TPQSIWYGPDRPKYLGpfSENTPSYLTGE--------YPGDYGWDTAGLSADPETFAK-NRELEVIHSRWAMLGALGCTF 114
Cdd:PLN00089  18 PAQKSRTRPATPTAAA--EDDCPGAIGFAakefmfigKTGSKKFDPLGLAEKVEEFLPwFRESELKHGRAAMLAVAGFIA 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 115 PEILSKNgvkfGEAVWFKAgsqifseggldylgNPNLIHAQSILAIWA--VQVVL-MGFIEGYRIGGGPLGEGLDPLYPG 191
Cdd:PLN00089  96 PDFVRIP----GEAYSFAA--------------IPKTIDAHDALLKSGamIQIFAwIGFVDLAVSAPAAAAAAEFDRTPG 157

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 332617623 192 G-AFDPLNLA-EDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKG 237
Cdd:PLN00089 158 DfGFDLLALYpKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHG 205
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 190-231 9.51e-04

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 39.34  E-value: 9.51e-04
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 332617623 190 PGGAFDPLNLAE--DPEAFSELKVKELKNGRLAMFSMFGFFVQA 231
Cdd:PLN00120  43 PLGFFDPLGLVDdgDQEKFDRLRYVEIKHGRISMLAVVGYLVTE 86
PLN00120 PLN00120
fucoxanthin-chlorophyll a-c binding protein; Provisional
 79-239 3.39e-03

fucoxanthin-chlorophyll a-c binding protein; Provisional


Pssm-ID: 215063  Cd Length: 202  Bit Score: 37.80  E-value: 3.39e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623  79 WDTAGL--SADPETFAKNRELEVIHSRWAMLGAL-------GCTFPEILSKNGVKFGEAVWFKAGSQIFSEGGLdylgnp 149
Cdd:PLN00120  47 FDPLGLvdDGDQEKFDRLRYVEIKHGRISMLAVVgylvteaGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGL------ 120

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 332617623 150 nlihAQSILAIWAVQVVLMGFIEGyrigggpLGEgldplYPG----GAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMF 225
Cdd:PLN00120 121 ----LQILAFIGFLELAVMKDITG-------EGE-----FVGdfrnGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGIL 184

                        170
                 ....*....|....
gi 332617623 226 GFFVQAIVTGKGPI 239
Cdd:PLN00120 185 ALMVHEQLGVELPI 198
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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