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Conserved domains on  [gi|312166729|emb|CBW73732|]
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unnamed protein product [Mycetohabitans rhizoxinica HKI 454]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Phage_holin_3_7 super family cl05163
Putative 3TM holin, Phage_holin_3; This is a family of putative proteobacterial phage ...
 18-95 5.68e-06

Putative 3TM holin, Phage_holin_3; This is a family of putative proteobacterial phage three-transmembrane-domain holins.


The actual alignment was detected with superfamily member pfam05449:

Pssm-ID: 428477  Cd Length: 80  Bit Score: 40.70  E-value: 5.68e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 312166729   18 TLAAHCASLLCVLAYRRRGARHRAGIAWLAWALAAALGSAIIDRVLYDRP-AGLSEAVTAVFLAAWMWAAHGNVARLLD 95
Cdd:pfam05449   2 NAVACAAIALRLLTYRRGGARHRRGISWLAYLLIAASGSVAIRILLGDYVeVDLAEALLNVVLCVLVLRARGNVAQLLR 80
 
Name Accession Description Interval E-value
Phage_holin_3_7 pfam05449
Putative 3TM holin, Phage_holin_3; This is a family of putative proteobacterial phage ...
 18-95 5.68e-06

Putative 3TM holin, Phage_holin_3; This is a family of putative proteobacterial phage three-transmembrane-domain holins.


Pssm-ID: 428477  Cd Length: 80  Bit Score: 40.70  E-value: 5.68e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 312166729   18 TLAAHCASLLCVLAYRRRGARHRAGIAWLAWALAAALGSAIIDRVLYDRP-AGLSEAVTAVFLAAWMWAAHGNVARLLD 95
Cdd:pfam05449   2 NAVACAAIALRLLTYRRGGARHRRGISWLAYLLIAASGSVAIRILLGDYVeVDLAEALLNVVLCVLVLRARGNVAQLLR 80
 
Name Accession Description Interval E-value
Phage_holin_3_7 pfam05449
Putative 3TM holin, Phage_holin_3; This is a family of putative proteobacterial phage ...
 18-95 5.68e-06

Putative 3TM holin, Phage_holin_3; This is a family of putative proteobacterial phage three-transmembrane-domain holins.


Pssm-ID: 428477  Cd Length: 80  Bit Score: 40.70  E-value: 5.68e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 312166729   18 TLAAHCASLLCVLAYRRRGARHRAGIAWLAWALAAALGSAIIDRVLYDRP-AGLSEAVTAVFLAAWMWAAHGNVARLLD 95
Cdd:pfam05449   2 NAVACAAIALRLLTYRRGGARHRRGISWLAYLLIAASGSVAIRILLGDYVeVDLAEALLNVVLCVLVLRARGNVAQLLR 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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