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Conserved domains on  [gi|257711541|emb|CBD25762|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

disease resistance family protein; NB-LRR family disease resistance protein( domain architecture ID 11477574)

disease resistance family protein similar to Nicotiana glutinosa TMV resistance protein N; resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein| NB-LRR (nucleotide-binding-leucine rich repeat) family disease resistance protein guards the plant against pathogens via an indirect interaction with an avirulence protein contained in the plant, triggering a defense response that restricts the pathogen growth

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 10-1118 0e+00

Resistant to P. syringae 6; Provisional


:

Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 2102.60  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541   10 RNWSYHVFPSFSGEDVRNTFLSHFLKELDRKLIISFKDNEIERSQSLDPELKHGIRNSRIAVVVFSKTYASSSWCLNELL 89
Cdd:PLN03210    9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541   90 EIVKCKKEFGQLVIPIFYNLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIRWKEALTDVANILGYHIVTWDNEASMIEEIA 169
Cdd:PLN03210   89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIA 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  170 NDILGKMNISPSNDFEDLVGIEDHITKMSSLLHLESEEVRMVGIWGPSGIGKTTIARALFSRLSCQFQSSVFIDKVFISK 249
Cdd:PLN03210  169 NDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  250 SMEVYSGANLVDYNMKLHLQRAFLAEIFDKKDIKI-HVGAMEKMVKHRKALIVIDDLDDQDVLDALADQTQWFGSGSRII 328
Cdd:PLN03210  249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIyHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  329 VVTENKHFLRANRIDHIYKVCLPSNALALEMFCRSAFKKNSPPDDFLELSSEVALRAGNLPLGLNVLGSNLRGINKGYWI 408
Cdd:PLN03210  329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  409 DMLPRLQ-GLDGKIGKTLRVSYDGLNNRKDEAIFRHIACIFNGEKVSDIKLLLANSNLDVNIGLKNLVDRSLICERFNTL 487
Cdd:PLN03210  409 DMLPRLRnGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIV 488

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  488 EMHSLLQELGKEIVRTQSNQPGEREFLVDLKDICDVLEHNTGTKKVLGITLDIDETDELHIHESSFKGMHNLLFLKIYTK 567
Cdd:PLN03210  489 EMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK 568

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  568 KLDQKKKVRWHLPERFDYLPSRLRLLRFDRYPSKCLPSNFHPENLVKLQMQQSKLEKLWDGVHSLAGLRNMDLRGSRNLK 647
Cdd:PLN03210  569 KWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  648 EIPDLSMATNLETLKLSSCSSLVELPSSIQYLNKLNDLDMSYCDHLETIPSGVNLKSLDRLNLSGCSRLKSFLDIPTNIS 727
Cdd:PLN03210  649 EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNIS 728

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  728 WLDIGQTA--DIPSNLRLQNLDELILCE--------RVQLRTPLMTMLSPTLTRLTFSNNPSFVEVPSSIQNLYQLEHLE 797
Cdd:PLN03210  729 WLDLDETAieEFPSNLRLENLDELILCEmkseklweRVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  798 IMNCRNLVTLPTGINLDSLISLDLSHCSQLKTFPDISTNISDLNLSYTAIEEVPLSIEKLSLLCYLDMNGCSNLLCVSPN 877
Cdd:PLN03210  809 IENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  878 ISKLKHLERADFSDCVELTEASWNGSSSEMVK-------LLPadnfSTVKLNFINCFKLDLTALIQNQTFFMQLILTGEE 950
Cdd:PLN03210  889 ISKLKHLETVDFSDCGALTEASWNGSPSEVAMatdnihsKLP----STVCINFINCFNLDQEALLQQQSIFKQLILSGEE 964

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  951 VPSYFTHRTSGDS---ISLPHISVCQSFFSFRGCTVIDVDSFSTISVSFDIEVCCRFIDRFGNHFDSTDFPGYFITTKLG 1027
Cdd:PLN03210  965 VPSYFTHRTTGASltnIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSVTKKG 1044

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541 1028 GHLVVFDCYFPFNEEFTTFLDgqFNYDHVDIQFRLTNDNSQLKLKGCGILLSEDVPSL-----------DNRPCSPNILP 1096
Cdd:PLN03210 1045 SHLVIFDCCFPLNEDNAPLAE--LNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLnntlpnveeadDDNPVNGSEHW 1122

                        1130      1140
                  ....*....|....*....|..
gi 257711541 1097 GVCEDSALERRSFRTKMRMITE 1118
Cdd:PLN03210 1123 EDCEDSALERESERTKDREMRD 1144
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 10-1118 0e+00

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 2102.60  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541   10 RNWSYHVFPSFSGEDVRNTFLSHFLKELDRKLIISFKDNEIERSQSLDPELKHGIRNSRIAVVVFSKTYASSSWCLNELL 89
Cdd:PLN03210    9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541   90 EIVKCKKEFGQLVIPIFYNLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIRWKEALTDVANILGYHIVTWDNEASMIEEIA 169
Cdd:PLN03210   89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIA 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  170 NDILGKMNISPSNDFEDLVGIEDHITKMSSLLHLESEEVRMVGIWGPSGIGKTTIARALFSRLSCQFQSSVFIDKVFISK 249
Cdd:PLN03210  169 NDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  250 SMEVYSGANLVDYNMKLHLQRAFLAEIFDKKDIKI-HVGAMEKMVKHRKALIVIDDLDDQDVLDALADQTQWFGSGSRII 328
Cdd:PLN03210  249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIyHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  329 VVTENKHFLRANRIDHIYKVCLPSNALALEMFCRSAFKKNSPPDDFLELSSEVALRAGNLPLGLNVLGSNLRGINKGYWI 408
Cdd:PLN03210  329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  409 DMLPRLQ-GLDGKIGKTLRVSYDGLNNRKDEAIFRHIACIFNGEKVSDIKLLLANSNLDVNIGLKNLVDRSLICERFNTL 487
Cdd:PLN03210  409 DMLPRLRnGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIV 488

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  488 EMHSLLQELGKEIVRTQSNQPGEREFLVDLKDICDVLEHNTGTKKVLGITLDIDETDELHIHESSFKGMHNLLFLKIYTK 567
Cdd:PLN03210  489 EMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK 568

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  568 KLDQKKKVRWHLPERFDYLPSRLRLLRFDRYPSKCLPSNFHPENLVKLQMQQSKLEKLWDGVHSLAGLRNMDLRGSRNLK 647
Cdd:PLN03210  569 KWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  648 EIPDLSMATNLETLKLSSCSSLVELPSSIQYLNKLNDLDMSYCDHLETIPSGVNLKSLDRLNLSGCSRLKSFLDIPTNIS 727
Cdd:PLN03210  649 EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNIS 728

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  728 WLDIGQTA--DIPSNLRLQNLDELILCE--------RVQLRTPLMTMLSPTLTRLTFSNNPSFVEVPSSIQNLYQLEHLE 797
Cdd:PLN03210  729 WLDLDETAieEFPSNLRLENLDELILCEmkseklweRVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  798 IMNCRNLVTLPTGINLDSLISLDLSHCSQLKTFPDISTNISDLNLSYTAIEEVPLSIEKLSLLCYLDMNGCSNLLCVSPN 877
Cdd:PLN03210  809 IENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  878 ISKLKHLERADFSDCVELTEASWNGSSSEMVK-------LLPadnfSTVKLNFINCFKLDLTALIQNQTFFMQLILTGEE 950
Cdd:PLN03210  889 ISKLKHLETVDFSDCGALTEASWNGSPSEVAMatdnihsKLP----STVCINFINCFNLDQEALLQQQSIFKQLILSGEE 964

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  951 VPSYFTHRTSGDS---ISLPHISVCQSFFSFRGCTVIDVDSFSTISVSFDIEVCCRFIDRFGNHFDSTDFPGYFITTKLG 1027
Cdd:PLN03210  965 VPSYFTHRTTGASltnIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSVTKKG 1044

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541 1028 GHLVVFDCYFPFNEEFTTFLDgqFNYDHVDIQFRLTNDNSQLKLKGCGILLSEDVPSL-----------DNRPCSPNILP 1096
Cdd:PLN03210 1045 SHLVIFDCCFPLNEDNAPLAE--LNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLnntlpnveeadDDNPVNGSEHW 1122

                        1130      1140
                  ....*....|....*....|..
gi 257711541 1097 GVCEDSALERRSFRTKMRMITE 1118
Cdd:PLN03210 1123 EDCEDSALERESERTKDREMRD 1144
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 14-179 2.34e-64

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 215.31  E-value: 2.34e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541    14 YHVFPSFSGEDVRNTFLSHFLKELDRKLIISFKD-NEIERSQSLDPELKHGIRNSRIAVVVFSKTYASSSWCLNELLEIV 92
Cdd:pfam01582    1 YDVFLSFRGSDTREWFVSHLLKELKQKGIKLFIDdRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVKIL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541    93 KCKKEFGQLVIPIFYNLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIRWKEALTDVANIlgYHIVTWDNEASMIEEIANDI 172
Cdd:pfam01582   81 ECALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFKKHKKVLTEEKVLKWRGALNEVANI--WHSKSVSDESKFWKKIAYDI 158


                   ....*..
gi 257711541   173 LGKMNIS 179
Cdd:pfam01582  159 SNKLNGT 165
TIR smart00255
Toll - interleukin 1 - resistance;
14-150 5.92e-41

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 147.47  E-value: 5.92e-41
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541     14 YHVFPSFSG-EDVRNTFLSHFLKELDRKLIISFKDNEIERSQSLDpELKHGIRNSRIAVVVFSKTYASSSWCLNELLEIV 92
Cdd:smart00255    2 YDVFISYSGkEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL 80

                            90       100       110       120       130       140
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541     93 KCKKEFGQL-VIPIFYNLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIR-WKEALTDVANI 150
Cdd:smart00255   81 ENALEEGGLrVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPEDEKEQfWKKALYAVPSK 140
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
599-867 2.33e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.51  E-value: 2.33e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  599 PSKCLPSNFHPENLVKLQMQQSKLEKLWDGVHSLAGLRNMDLRGSRNLKEIPDLSMATNLETLKLSSCSSLVELPSSIQY 678
Cdd:COG4886    15 LLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGD 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  679 LNKLNDLDMSYCDHLETIPsgvNLKSLDrLNLSGCSRLKSFLDIPTNISWLDIG--QTADIPSNL-RLQNLDELIL--CE 753
Cdd:COG4886    95 LTNLTELDLSGNEELSNLT---NLESLD-LSGNQLTDLPEELANLTNLKELDLSnnQLTDLPEPLgNLTNLKSLDLsnNQ 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  754 RVQLRTPLMTMlsPTLTRLTFSNNPsFVEVPSSIQNLYQLEHLEIMNCRnLVTLPTGI-NLDSLISLDLSHCsQLKTFPD 832
Cdd:COG4886   171 LTDLPEELGNL--TNLKELDLSNNQ-ITDLPEPLGNLTNLEELDLSGNQ-LTDLPEPLaNLTNLETLDLSNN-QLTDLPE 245

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 257711541  833 IS--TNISDLNLSYTAIEEVPlSIEKLSLLCYLDMNG 867
Cdd:COG4886   246 LGnlTNLEELDLSNNQLTDLP-PLANLTNLKTLDLSN 281
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 644-829 1.57e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 44.39  E-value: 1.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  644 RNLKEIPDLSMATNLETL-----------KLSSCSSLVELpssiqYL--NKLNDLdmsycDHLEtipsgvNLKSLDRLNL 710
Cdd:cd21340    12 KNITKIDNLSLCKNLKVLylydnkitkieNLEFLTNLTHL-----YLqnNQIEKI-----ENLE------NLVNLKKLYL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  711 SGcsrlksfldipTNISWLdigqtadipSNL-RLQNLDEL-ILCERVQLRTPL------MTMLSPTLTRLTFSNNPSfve 782
Cdd:cd21340    76 GG-----------NRISVV---------EGLeNLTNLEELhIENQRLPPGEKLtfdprsLAALSNSLRVLNISGNNI--- 132

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 257711541  783 vpSSIQNLYQLEHLEIMNC-RNLVTlptgiNLDSLISLdLSHCSQLKT 829
Cdd:cd21340   133 --DSLEPLAPLRNLEQLDAsNNQIS-----DLEELLDL-LSSWPSLRE 172
 
Name Accession Description Interval E-value
PLN03210 PLN03210
Resistant to P. syringae 6; Provisional
 10-1118 0e+00

Resistant to P. syringae 6; Provisional


Pssm-ID: 215633 [Multi-domain]  Cd Length: 1153  Bit Score: 2102.60  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541   10 RNWSYHVFPSFSGEDVRNTFLSHFLKELDRKLIISFKDNEIERSQSLDPELKHGIRNSRIAVVVFSKTYASSSWCLNELL 89
Cdd:PLN03210    9 RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNYASSSWCLNELL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541   90 EIVKCKKEFGQLVIPIFYNLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIRWKEALTDVANILGYHIVTWDNEASMIEEIA 169
Cdd:PLN03210   89 EIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIA 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  170 NDILGKMNISPSNDFEDLVGIEDHITKMSSLLHLESEEVRMVGIWGPSGIGKTTIARALFSRLSCQFQSSVFIDKVFISK 249
Cdd:PLN03210  169 NDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  250 SMEVYSGANLVDYNMKLHLQRAFLAEIFDKKDIKI-HVGAMEKMVKHRKALIVIDDLDDQDVLDALADQTQWFGSGSRII 328
Cdd:PLN03210  249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIyHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRII 328

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  329 VVTENKHFLRANRIDHIYKVCLPSNALALEMFCRSAFKKNSPPDDFLELSSEVALRAGNLPLGLNVLGSNLRGINKGYWI 408
Cdd:PLN03210  329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  409 DMLPRLQ-GLDGKIGKTLRVSYDGLNNRKDEAIFRHIACIFNGEKVSDIKLLLANSNLDVNIGLKNLVDRSLICERFNTL 487
Cdd:PLN03210  409 DMLPRLRnGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIV 488

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  488 EMHSLLQELGKEIVRTQSNQPGEREFLVDLKDICDVLEHNTGTKKVLGITLDIDETDELHIHESSFKGMHNLLFLKIYTK 567
Cdd:PLN03210  489 EMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK 568

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  568 KLDQKKKVRWHLPERFDYLPSRLRLLRFDRYPSKCLPSNFHPENLVKLQMQQSKLEKLWDGVHSLAGLRNMDLRGSRNLK 647
Cdd:PLN03210  569 KWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  648 EIPDLSMATNLETLKLSSCSSLVELPSSIQYLNKLNDLDMSYCDHLETIPSGVNLKSLDRLNLSGCSRLKSFLDIPTNIS 727
Cdd:PLN03210  649 EIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNIS 728

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  728 WLDIGQTA--DIPSNLRLQNLDELILCE--------RVQLRTPLMTMLSPTLTRLTFSNNPSFVEVPSSIQNLYQLEHLE 797
Cdd:PLN03210  729 WLDLDETAieEFPSNLRLENLDELILCEmkseklweRVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  798 IMNCRNLVTLPTGINLDSLISLDLSHCSQLKTFPDISTNISDLNLSYTAIEEVPLSIEKLSLLCYLDMNGCSNLLCVSPN 877
Cdd:PLN03210  809 IENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  878 ISKLKHLERADFSDCVELTEASWNGSSSEMVK-------LLPadnfSTVKLNFINCFKLDLTALIQNQTFFMQLILTGEE 950
Cdd:PLN03210  889 ISKLKHLETVDFSDCGALTEASWNGSPSEVAMatdnihsKLP----STVCINFINCFNLDQEALLQQQSIFKQLILSGEE 964

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  951 VPSYFTHRTSGDS---ISLPHISVCQSFFSFRGCTVIDVDSFSTISVSFDIEVCCRFIDRFGNHFDSTDFPGYFITTKLG 1027
Cdd:PLN03210  965 VPSYFTHRTTGASltnIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDSPYQPHVFSVTKKG 1044

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541 1028 GHLVVFDCYFPFNEEFTTFLDgqFNYDHVDIQFRLTNDNSQLKLKGCGILLSEDVPSL-----------DNRPCSPNILP 1096
Cdd:PLN03210 1045 SHLVIFDCCFPLNEDNAPLAE--LNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSLnntlpnveeadDDNPVNGSEHW 1122

                        1130      1140
                  ....*....|....*....|..
gi 257711541 1097 GVCEDSALERRSFRTKMRMITE 1118
Cdd:PLN03210 1123 EDCEDSALERESERTKDREMRD 1144
TIR pfam01582
TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular ...
 14-179 2.34e-64

TIR domain; The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades.


Pssm-ID: 396246 [Multi-domain]  Cd Length: 165  Bit Score: 215.31  E-value: 2.34e-64
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541    14 YHVFPSFSGEDVRNTFLSHFLKELDRKLIISFKD-NEIERSQSLDPELKHGIRNSRIAVVVFSKTYASSSWCLNELLEIV 92
Cdd:pfam01582    1 YDVFLSFRGSDTREWFVSHLLKELKQKGIKLFIDdRDLEPGEAIAPELLSAIEKSRRSVVVLSPNYASSGWCLDELVKIL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541    93 KCKKEFGQLVIPIFYNLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIRWKEALTDVANIlgYHIVTWDNEASMIEEIANDI 172
Cdd:pfam01582   81 ECALDLGQKVIPIFYEVDPSDVRKQTGSFGKAFKKHKKVLTEEKVLKWRGALNEVANI--WHSKSVSDESKFWKKIAYDI 158


                   ....*..
gi 257711541   173 LGKMNIS 179
Cdd:pfam01582  159 SNKLNGT 165
TIR smart00255
Toll - interleukin 1 - resistance;
14-150 5.92e-41

Toll - interleukin 1 - resistance;


Pssm-ID: 214587 [Multi-domain]  Cd Length: 140  Bit Score: 147.47  E-value: 5.92e-41
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541     14 YHVFPSFSG-EDVRNTFLSHFLKELDRKLIISFKDNEIERSQSLDpELKHGIRNSRIAVVVFSKTYASSSWCLNELLEIV 92
Cdd:smart00255    2 YDVFISYSGkEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAIVVLSPNYAESEWCLDELVAAL 80

                            90       100       110       120       130       140
                    ....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541     93 KCKKEFGQL-VIPIFYNLDPSHVRKQTGDFGKIFEKTCRNKTVDEKIR-WKEALTDVANI 150
Cdd:smart00255   81 ENALEEGGLrVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPEDEKEQfWKKALYAVPSK 140
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
599-867 2.33e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 76.51  E-value: 2.33e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  599 PSKCLPSNFHPENLVKLQMQQSKLEKLWDGVHSLAGLRNMDLRGSRNLKEIPDLSMATNLETLKLSSCSSLVELPSSIQY 678
Cdd:COG4886    15 LLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGD 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  679 LNKLNDLDMSYCDHLETIPsgvNLKSLDrLNLSGCSRLKSFLDIPTNISWLDIG--QTADIPSNL-RLQNLDELIL--CE 753
Cdd:COG4886    95 LTNLTELDLSGNEELSNLT---NLESLD-LSGNQLTDLPEELANLTNLKELDLSnnQLTDLPEPLgNLTNLKSLDLsnNQ 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  754 RVQLRTPLMTMlsPTLTRLTFSNNPsFVEVPSSIQNLYQLEHLEIMNCRnLVTLPTGI-NLDSLISLDLSHCsQLKTFPD 832
Cdd:COG4886   171 LTDLPEELGNL--TNLKELDLSNNQ-ITDLPEPLGNLTNLEELDLSGNQ-LTDLPEPLaNLTNLETLDLSNN-QLTDLPE 245

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 257711541  833 IS--TNISDLNLSYTAIEEVPlSIEKLSLLCYLDMNG 867
Cdd:COG4886   246 LGnlTNLEELDLSNNQLTDLP-PLANLTNLKTLDLSN 281
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
655-892 6.44e-11

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 65.73  E-value: 6.44e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  655 ATNLETLKLSSCSSLVELPSSIQYLNKLNDLDMSYCDHLETIPSGVNLKSLDRLNLSGCSRLKSFLDIPTNISWLDIGQT 734
Cdd:COG4886     1 LLLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  735 ADIPSNLRLQNLDELILCERVQLRTPLMTMLSPTLTRLTFSNNpSFVEVPSSIQNLYQLEHLEIMNCrNLVTLPTGI-NL 813
Cdd:COG4886    81 LLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSGN-QLTDLPEELANLTNLKELDLSNN-QLTDLPEPLgNL 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  814 DSLISLDLSHCsQLKTFPD-IS--TNISDLNLSYTAIEEVPLSIEKLSLLCYLDMNGCsNLLCVSPNISKLKHLERADFS 890
Cdd:COG4886   159 TNLKSLDLSNN-QLTDLPEeLGnlTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGN-QLTDLPEPLANLTNLETLDLS 236


                  ..
gi 257711541  891 DC 892
Cdd:COG4886   237 NN 238
TIR_2 pfam13676
TIR domain; This is a family of Toll-like receptors.
 16-113 1.58e-07

TIR domain; This is a family of Toll-like receptors.


Pssm-ID: 463954 [Multi-domain]  Cd Length: 118  Bit Score: 51.16  E-value: 1.58e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541    16 VFPSFSGED---VRNtfLSHFLKELDRKLIISFKDneIERSQSLDPELKHGIRNSRIAVVVFSKTYASSSWCLNElLEIV 92
Cdd:pfam13676    1 VFISYAGEDrawAEW--LADALEAAGYRVWLDRWD--IRPGDDWVEEIEEAIENSDRVLVVLSPNYLESPWCRAE-WEAA 75

                           90       100
                   ....*....|....*....|.
gi 257711541    93 KCKKEFGQLVIPIFYNLDPSH 113
Cdd:pfam13676   76 LADPEGRKRLIPVRLECDLEL 96
PLN03194 PLN03194
putative disease resistance protein; Provisional
 16-115 5.66e-07

putative disease resistance protein; Provisional


Pssm-ID: 215626 [Multi-domain]  Cd Length: 187  Bit Score: 50.98  E-value: 5.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541   16 VFPSFSGEDVRNTFLSHFLKELDRKLIISFKDNE-IERSQSLDPELKHGIRNSRIAVVVFSKTYASSSWCLNELLEIVKC 94
Cdd:PLN03194   29 VFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKnMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELALIMES 108

                          90       100
                  ....*....|....*....|.
gi 257711541   95 KKEfgqlVIPIFYNLDPSHVR 115
Cdd:PLN03194  109 KKR----VIPIFCDVKPSQLR 125
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
579-845 8.66e-06

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 49.55  E-value: 8.66e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  579 LPERFDYLPSrLRLLRFDRYPSKCLPSNFHP-ENLVKLQMQQSKLEKLWDGVHSLAGLRNMDLRGSRnLKEIPD-LSMAT 656
Cdd:COG4886   151 LPEPLGNLTN-LKSLDLSNNQLTDLPEELGNlTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQ-LTDLPEpLANLT 228

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  657 NLETLKLSSCSsLVELPSsIQYLNKLNDLDMSYCdHLETIPSGVNLKSLDRLNLSGCSRLKSFLDIPTNISWLDIGQTAD 736
Cdd:COG4886   229 NLETLDLSNNQ-LTDLPE-LGNLTNLEELDLSNN-QLTDLPPLANLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLL 305

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  737 IPSNLRLQNLDELILCERVQLRTPLMTMLSPTLTRLTFSNNPSFVEVPSSIQNLYQLEHLEIMNCRNLVTLPTGINLDSL 816
Cdd:COG4886   306 LLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTLGLLGLLEATLLTLALL 385

                         250       260
                  ....*....|....*....|....*....
gi 257711541  817 ISLDLSHCSQLKTFPDISTNISDLNLSYT 845
Cdd:COG4886   386 LLTLLLLLLTTTAGVLLLTLALLDAVNTE 414
NB-ARC pfam00931
NB-ARC domain;
190-400 6.11e-05

NB-ARC domain;


Pssm-ID: 395745 [Multi-domain]  Cd Length: 245  Bit Score: 45.83  E-value: 6.11e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541   190 IEDHITKMSSLLhLESEEVRMVGIWGPSGIGKTTIARALFSRLSC---QFQSSVFidkVFISKSMEVYsganlvdynmkl 266
Cdd:pfam00931    1 REDMVEKVIGKL-SEKDEPGIVGIHGMGGVGKTTLAAQIFNDFDEvegHFDSVAW---VVVSKTFTIS------------ 64

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541   267 HLQRAFLAEIFDKKDIKIHVGAMEKMVKHRKALIVI----------DDLDDQDVLDALADQtqwfGSGSRIIVVTENKHF 336
Cdd:pfam00931   65 TLQQTILQNLGLSEDDWDNKEEGELARKIRRALLTKrfllvlddvwDEEDWDKIGIPLPDR----ENGCRVLLTTRSEEV 140

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541   337 lrANRIDHIYKV----CL-PSNalALEMFCRSAFKKNSPPDDFLE-LSSEVALRAGNLPLGLNVLGSNLR 400
Cdd:pfam00931  141 --AGRVGGPSDPheveLLePDE--AWELFENKVFPKTLGECELLEdVAKEIVEKCRGLPLALKVLGGLLS 206
LRR_3 pfam07725
Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the ...
 611-629 9.17e-05

Leucine Rich Repeat; This Pfam entry includes some LRRs that fail to be detected by the pfam00560 model.


Pssm-ID: 429621 [Multi-domain]  Cd Length: 20  Bit Score: 40.40  E-value: 9.17e-05
                           10
                   ....*....|....*....
gi 257711541   611 NLVKLQMQQSKLEKLWDGV 629
Cdd:pfam07725    1 NLVELNMPYSKLEKLWEGV 19
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 644-829 1.57e-04

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 44.39  E-value: 1.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  644 RNLKEIPDLSMATNLETL-----------KLSSCSSLVELpssiqYL--NKLNDLdmsycDHLEtipsgvNLKSLDRLNL 710
Cdd:cd21340    12 KNITKIDNLSLCKNLKVLylydnkitkieNLEFLTNLTHL-----YLqnNQIEKI-----ENLE------NLVNLKKLYL 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  711 SGcsrlksfldipTNISWLdigqtadipSNL-RLQNLDEL-ILCERVQLRTPL------MTMLSPTLTRLTFSNNPSfve 782
Cdd:cd21340    76 GG-----------NRISVV---------EGLeNLTNLEELhIENQRLPPGEKLtfdprsLAALSNSLRVLNISGNNI--- 132

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 257711541  783 vpSSIQNLYQLEHLEIMNC-RNLVTlptgiNLDSLISLdLSHCSQLKT 829
Cdd:cd21340   133 --DSLEPLAPLRNLEQLDAsNNQIS-----DLEELLDL-LSSWPSLRE 172
COG4916 COG4916
Uncharacterized conserved protein [Function unknown];
14-153 6.57e-04

Uncharacterized conserved protein [Function unknown];


Pssm-ID: 443944 [Multi-domain]  Cd Length: 236  Bit Score: 42.79  E-value: 6.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541   14 YHVFPSFSGED---VRNtfLSHFLKELDRKLiisFKD-NEIERS--QSLDPELKHGIRN-SRIAVVVFSKTYASSSWCLN 86
Cdd:COG4916     1 YDVALSFAGEDrefVER--VAEALKARGIKV---FYDeNEEAELwgKDLDEYLQDIYRSeSRFVVVFLSKDYVEKKWTGL 75

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 257711541   87 ELLEIV-KCKKEFGQLVIPIFY-NLDPSHVRKQTG--DFGKIFEKTcRNKTVDEKIRWKEALTDVANILGY 153
Cdd:COG4916    76 ERRAALaRAMQRKKEYILPIRLdDTEIPGILATIGyiDLRNRTPEE-IADLILEKLAKGRPKPSRALSLAP 145
PLN03150 PLN03150
hypothetical protein; Provisional
 593-714 7.12e-04

hypothetical protein; Provisional


Pssm-ID: 178695 [Multi-domain]  Cd Length: 623  Bit Score: 43.65  E-value: 7.12e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  593 LRFDRYPSKCLPSNfHPENLVKLQMQQSKLEKLWDGVhslaGLRNMDLRGsrnlkEIP-DLSMATNLETLKLSSCSSLVE 671
Cdd:PLN03150  388 LRFGWNGDPCVPQQ-HPWSGADCQFDSTKGKWFIDGL----GLDNQGLRG-----FIPnDISKLRHLQSINLSGNSIRGN 457

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 257711541  672 LPSSIQYLNKLNDLDMSYCDHLETIPSGV-NLKSLDRLNLSGCS 714
Cdd:PLN03150  458 IPPSLGSITSLEVLDLSYNSFNGSIPESLgQLTSLRILNLNGNS 501
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 551-711 7.66e-04

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 43.68  E-value: 7.66e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  551 SSFKGMHNLLFLKIYTKKLDQKKKVR-WHLPErfdylpsrLRLLRFDRYP-SKCLPSNFHPENLVKLQMQQSKL-EKLWD 627
Cdd:PLN00113  422 SEFTKLPLVYFLDISNNNLQGRINSRkWDMPS--------LQMLSLARNKfFGGLPDSFGSKRLENLDLSRNQFsGAVPR 493

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257711541  628 GVHSLAGLRNMDLRGSRNLKEIPD-LSMATNLETLKLSSCSSLVELPSSIQYLNKLNDLDMSYCDHLETIPSGV-NLKSL 705
Cdd:PLN00113  494 KLGSLSELMQLKLSENKLSGEIPDeLSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLgNVESL 573


                  ....*.
gi 257711541  706 DRLNLS 711
Cdd:PLN00113  574 VQVNIS 579
CDC6 COG1474
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
185-233 2.56e-03

Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];


Pssm-ID: 441083 [Multi-domain]  Cd Length: 389  Bit Score: 41.76  E-value: 2.56e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 257711541  185 EDLVGIEDHITKMSSLLH--LESEEVRMVGIWGPSGIGKTTIARALFSRLS 233
Cdd:COG1474    26 DRLPHREEEIEELASALRpaLRGERPSNVLIYGPTGTGKTAVAKYVLEELE 76
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 209-243 3.56e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 39.28  E-value: 3.56e-03
                            10        20        30
                    ....*....|....*....|....*....|....*
gi 257711541    209 RMVGIWGPSGIGKTTIARALFSRLSCQFQSSVFID 243
Cdd:smart00382    3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37
RarA COG2256
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ...
 185-233 5.09e-03

Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];


Pssm-ID: 441857 [Multi-domain]  Cd Length: 439  Bit Score: 40.81  E-value: 5.09e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 257711541  185 EDLVGiEDHITKMSSLLH--LESEEVRMVGIWGPSGIGKTTIARAL-------FSRLS 233
Cdd:COG2256    25 DEVVG-QEHLLGPGKPLRraIEAGRLSSMILWGPPGTGKTTLARLIanatdaeFVALS 81
AAA_16 pfam13191
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ...
 187-233 7.22e-03

AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.


Pssm-ID: 433025 [Multi-domain]  Cd Length: 167  Bit Score: 38.64  E-value: 7.22e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 257711541   187 LVGIEDHITKMSSLLH-LESEEVRMVGIWGPSGIGKTTIARALFSRLS 233
Cdd:pfam13191    2 LVGREEELEQLLDALDrVRSGRPPSVLLTGEAGTGKTTLLRELLRALE 49
PRK13342 PRK13342
recombination factor protein RarA; Reviewed
 184-236 8.82e-03

recombination factor protein RarA; Reviewed


Pssm-ID: 237355 [Multi-domain]  Cd Length: 413  Bit Score: 40.07  E-value: 8.82e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 257711541  184 FEDLVGiEDHITKMSSLLH--LESEEVRMVGIWGPSGIGKTTIARALFSRLSCQF 236
Cdd:PRK13342   11 LDEVVG-QEHLLGPGKPLRrmIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPF 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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