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Conserved domains on  [gi|257728011|emb|CBD16375|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

Pec_lyase_N and Amb_all domain-containing protein( domain architecture ID 10516808)

Pec_lyase_N and Amb_all domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Amb_all smart00656
Amb_all domain;
180-374 1.31e-78

Amb_all domain;


:

Pssm-ID: 214765  Cd Length: 190  Bit Score: 242.57  E-value: 1.31e-78
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011   180 MIIKLQQ--ELMITSDKTIDGRGARVYImEGAGLTLQFVNNVIIHNIYVKHIVPGNGglirdseahiglrtkSDGDGISL 257
Cdd:smart00656   2 VTITLDNagTIIINSNKTIDGRGSKVEI-KGGGLTIKSVSNVIIRNLTIHDPKPVYG---------------SDGDAISI 65
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011   258 FGATNIWIDHVSMTRCA---------DGMIDAIDGSTAVTISNSHFTDHQEVMLFGARDEHVIDKKMQITVAFNHFGKrL 328
Cdd:smart00656  66 DGSSNVWIDHVSLSGCTvtgfgddtyDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGN-L 144
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 257728011   329 EQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPP 374
Cdd:smart00656 145 RQRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAPI 190
Pec_lyase_N pfam04431
Pectate lyase, N terminus; This region is found N terminal to the pectate lyase domain ...
31-85 5.40e-21

Pectate lyase, N terminus; This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes.


:

Pssm-ID: 398232  Cd Length: 52  Bit Score: 85.75  E-value: 5.40e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 257728011   31 VAVFDSYWTQRQSDALKQTIGSYDPHPLNVTNHFNYHVNIAVDASesrNDTRREL 85
Cdd:pfam04431   1 IAEFDEYWQKRAEEARKAALEAYNPDPENVTDHFNKAVHKALEGS---NSTRRSL 52
 
Name Accession Description Interval E-value
Amb_all smart00656
Amb_all domain;
180-374 1.31e-78

Amb_all domain;


Pssm-ID: 214765  Cd Length: 190  Bit Score: 242.57  E-value: 1.31e-78
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011   180 MIIKLQQ--ELMITSDKTIDGRGARVYImEGAGLTLQFVNNVIIHNIYVKHIVPGNGglirdseahiglrtkSDGDGISL 257
Cdd:smart00656   2 VTITLDNagTIIINSNKTIDGRGSKVEI-KGGGLTIKSVSNVIIRNLTIHDPKPVYG---------------SDGDAISI 65
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011   258 FGATNIWIDHVSMTRCA---------DGMIDAIDGSTAVTISNSHFTDHQEVMLFGARDEHVIDKKMQITVAFNHFGKrL 328
Cdd:smart00656  66 DGSSNVWIDHVSLSGCTvtgfgddtyDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGN-L 144
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 257728011   329 EQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPP 374
Cdd:smart00656 145 RQRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAPI 190
PelB COG3866
Pectate lyase [Carbohydrate transport and metabolism];
130-406 1.40e-50

Pectate lyase [Carbohydrate transport and metabolism];


Pssm-ID: 443075 [Multi-domain]  Cd Length: 326  Bit Score: 174.41  E-value: 1.40e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011 130 GFGR---RTTGGKDGPIYVVKDASDndlinpkpgtLRHAVTRDGPLWIIFarSMIIKL-QQELMITSDKTIDGRGARVYI 205
Cdd:COG3866   37 GFASvngGTTGGAGGTVVTVTTLAD----------LRAALEASGPRIIVV--SGTIDLsKSPLKVNSNKTIAGQGDGATI 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011 206 mEGAGLTLQFVNNVIIHNIYVKHIVPGNGglirdseahiglrtkSDGDGISLFGATNIWIDHVSMTRCADGMIDAIDGST 285
Cdd:COG3866  105 -TGGGLNIKGASNVIIRNLRFRNGDDGGG---------------SGGDAIGIEGAHNVWIDHCTFSWGYDGLLDIKRGSD 168
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011 286 AVTISNSHF----TDHQEVMLFGARDEHvIDKKMQITVAFNHFgKRLEQRMPRCRYGTIHVVNNDYTHW-EMYAIGGNMN 360
Cdd:COG3866  169 NVTVSWNIFaegkGDHGKGMLIGSSDSD-TTGKLRVTFHHNLF-ANNDSRNPRVRFGQVHVYNNYFYNWgNNYGIGSGGG 246
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 257728011 361 PTIISQGNRFIAPPNEEAKQITKREYTPYgewkswNWQSEGDYFLN 406
Cdd:COG3866  247 AQVLVENNYFENVKGPLATSDGSSLLDPG------YLYARGNVFDN 286
Pec_lyase_N pfam04431
Pectate lyase, N terminus; This region is found N terminal to the pectate lyase domain ...
31-85 5.40e-21

Pectate lyase, N terminus; This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes.


Pssm-ID: 398232  Cd Length: 52  Bit Score: 85.75  E-value: 5.40e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 257728011   31 VAVFDSYWTQRQSDALKQTIGSYDPHPLNVTNHFNYHVNIAVDASesrNDTRREL 85
Cdd:pfam04431   1 IAEFDEYWQKRAEEARKAALEAYNPDPENVTDHFNKAVHKALEGS---NSTRRSL 52
Pectate_lyase_4 pfam00544
Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an ...
216-370 6.43e-20

Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.


Pssm-ID: 366158  Cd Length: 211  Bit Score: 87.65  E-value: 6.43e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011  216 VNNVIIHNIYVKHIVPGNgglirdseahiglrtkSDGDGISLFGATNIWIDHVSMT----RCA---------DGMIDAID 282
Cdd:pfam00544  59 SSNVIVRNLYIGTPDGWN----------------KDWDAIRIDNSPNVWVDHVTISdgsfTDDgyttkyvqhDGALDIKK 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011  283 GSTAVTISNSHFTDHQEVMLFG-ARDEHVIDK-KMQITVAFNHFgKRLEQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMN 360
Cdd:pfam00544 123 GSDYVTISYSLFHGHKKTGLIGhSDDNNSQDTgKLRVTYHHNVY-NRVTERAPLVRYGSIHAYNNVYVNIYLYSFGVGQN 201
                         170
                  ....*....|
gi 257728011  361 PTIISQGNRF 370
Cdd:pfam00544 202 GSVLSESNSF 211
 
Name Accession Description Interval E-value
Amb_all smart00656
Amb_all domain;
180-374 1.31e-78

Amb_all domain;


Pssm-ID: 214765  Cd Length: 190  Bit Score: 242.57  E-value: 1.31e-78
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011   180 MIIKLQQ--ELMITSDKTIDGRGARVYImEGAGLTLQFVNNVIIHNIYVKHIVPGNGglirdseahiglrtkSDGDGISL 257
Cdd:smart00656   2 VTITLDNagTIIINSNKTIDGRGSKVEI-KGGGLTIKSVSNVIIRNLTIHDPKPVYG---------------SDGDAISI 65
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011   258 FGATNIWIDHVSMTRCA---------DGMIDAIDGSTAVTISNSHFTDHQEVMLFGARDEHVIDKKMQITVAFNHFGKrL 328
Cdd:smart00656  66 DGSSNVWIDHVSLSGCTvtgfgddtyDGLIDIKNGSTYVTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGN-L 144
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 257728011   329 EQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMNPTIISQGNRFIAPP 374
Cdd:smart00656 145 RQRAPRVRFGYVHVYNNYYTGWTSYAIGGRMGATILSEGNYFEAPI 190
PelB COG3866
Pectate lyase [Carbohydrate transport and metabolism];
130-406 1.40e-50

Pectate lyase [Carbohydrate transport and metabolism];


Pssm-ID: 443075 [Multi-domain]  Cd Length: 326  Bit Score: 174.41  E-value: 1.40e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011 130 GFGR---RTTGGKDGPIYVVKDASDndlinpkpgtLRHAVTRDGPLWIIFarSMIIKL-QQELMITSDKTIDGRGARVYI 205
Cdd:COG3866   37 GFASvngGTTGGAGGTVVTVTTLAD----------LRAALEASGPRIIVV--SGTIDLsKSPLKVNSNKTIAGQGDGATI 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011 206 mEGAGLTLQFVNNVIIHNIYVKHIVPGNGglirdseahiglrtkSDGDGISLFGATNIWIDHVSMTRCADGMIDAIDGST 285
Cdd:COG3866  105 -TGGGLNIKGASNVIIRNLRFRNGDDGGG---------------SGGDAIGIEGAHNVWIDHCTFSWGYDGLLDIKRGSD 168
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011 286 AVTISNSHF----TDHQEVMLFGARDEHvIDKKMQITVAFNHFgKRLEQRMPRCRYGTIHVVNNDYTHW-EMYAIGGNMN 360
Cdd:COG3866  169 NVTVSWNIFaegkGDHGKGMLIGSSDSD-TTGKLRVTFHHNLF-ANNDSRNPRVRFGQVHVYNNYFYNWgNNYGIGSGGG 246
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 257728011 361 PTIISQGNRFIAPPNEEAKQITKREYTPYgewkswNWQSEGDYFLN 406
Cdd:COG3866  247 AQVLVENNYFENVKGPLATSDGSSLLDPG------YLYARGNVFDN 286
Pec_lyase_N pfam04431
Pectate lyase, N terminus; This region is found N terminal to the pectate lyase domain ...
31-85 5.40e-21

Pectate lyase, N terminus; This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes.


Pssm-ID: 398232  Cd Length: 52  Bit Score: 85.75  E-value: 5.40e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 257728011   31 VAVFDSYWTQRQSDALKQTIGSYDPHPLNVTNHFNYHVNIAVDASesrNDTRREL 85
Cdd:pfam04431   1 IAEFDEYWQKRAEEARKAALEAYNPDPENVTDHFNKAVHKALEGS---NSTRRSL 52
Pectate_lyase_4 pfam00544
Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an ...
216-370 6.43e-20

Pectate lyase; This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.


Pssm-ID: 366158  Cd Length: 211  Bit Score: 87.65  E-value: 6.43e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011  216 VNNVIIHNIYVKHIVPGNgglirdseahiglrtkSDGDGISLFGATNIWIDHVSMT----RCA---------DGMIDAID 282
Cdd:pfam00544  59 SSNVIVRNLYIGTPDGWN----------------KDWDAIRIDNSPNVWVDHVTISdgsfTDDgyttkyvqhDGALDIKK 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011  283 GSTAVTISNSHFTDHQEVMLFG-ARDEHVIDK-KMQITVAFNHFgKRLEQRMPRCRYGTIHVVNNDYTHWEMYAIGGNMN 360
Cdd:pfam00544 123 GSDYVTISYSLFHGHKKTGLIGhSDDNNSQDTgKLRVTYHHNVY-NRVTERAPLVRYGSIHAYNNVYVNIYLYSFGVGQN 201
                         170
                  ....*....|
gi 257728011  361 PTIISQGNRF 370
Cdd:pfam00544 202 GSVLSESNSF 211
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
146-296 1.17e-05

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 47.22  E-value: 1.17e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011 146 VKDASDNDLINPKPGTLRHAVTRDGPLWIIFARSMIIKLQQE---LMITSDK------TIDGRGaRVYIMEGAGLTLQFV 216
Cdd:COG3420   28 IDAAPPGDTIEVPPGTYEGNIVIDKPLTLIGEGGAVIDGGGKgtvITITADNvtvrglTITGSG-DSLTDDDAGIYVRGA 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257728011 217 NNVIIHN---------IYVKHivpGNGGLIRDSEAHiGLRTKSD--GDGISLFGATNIWIDHVSMTRCADGMIdaIDGST 285
Cdd:COG3420  107 DNAVIENnriennlfgIYLEG---SDNNVIRNNTIS-GNRDLRAdrGNGIHLWNSPGNVIEGNTISGGRDGIY--LEFSD 180
                        170
                 ....*....|.
gi 257728011 286 AVTISNSHFTD 296
Cdd:COG3420  181 NNVIRNNTIRN 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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