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Conserved domains on  [gi|257718141|emb|CBC96908|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

HPP family protein( domain architecture ID 10523216)

HPP family protein is an integral membrane protein with four transmembrane spanning helices

Gene Ontology:  GO:0016020

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HPP pfam04982
HPP family; These proteins are integral membrane proteins with four transmembrane spanning ...
 134-236 2.69e-22

HPP family; These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of the alignment is a motif HPP. The function of these proteins is uncertain but they may be transporters.


:

Pssm-ID: 461506  Cd Length: 122  Bit Score: 88.73  E-value: 2.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257718141  134 VAPLGAVSAILFTTPSAPAARKYNMFTAQIGCAAIGVLAFSAFGPS--WLARSTALAASIAFMVITRANHPPAASLPLLF 211
Cdd:pfam04982   2 IASFGASAVLLFGAPESPLAQPRNVVGGHLISALIGVAIAKLFGLSllWLAAALAVALAIALMQLTRTLHPPAGATALLA 81

                          90       100
                  ....*....|....*....|....*
gi 257718141  212 IDGAKLHKLNFWYALFPGAAACILL 236
Cdd:pfam04982  82 VLGGPIHALGWWFVLVPVLLGSLLL 106
 
Name Accession Description Interval E-value
HPP pfam04982
HPP family; These proteins are integral membrane proteins with four transmembrane spanning ...
 134-236 2.69e-22

HPP family; These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of the alignment is a motif HPP. The function of these proteins is uncertain but they may be transporters.


Pssm-ID: 461506  Cd Length: 122  Bit Score: 88.73  E-value: 2.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257718141  134 VAPLGAVSAILFTTPSAPAARKYNMFTAQIGCAAIGVLAFSAFGPS--WLARSTALAASIAFMVITRANHPPAASLPLLF 211
Cdd:pfam04982   2 IASFGASAVLLFGAPESPLAQPRNVVGGHLISALIGVAIAKLFGLSllWLAAALAVALAIALMQLTRTLHPPAGATALLA 81

                          90       100
                  ....*....|....*....|....*
gi 257718141  212 IDGAKLHKLNFWYALFPGAAACILL 236
Cdd:pfam04982  82 VLGGPIHALGWWFVLVPVLLGSLLL 106
 
Name Accession Description Interval E-value
HPP pfam04982
HPP family; These proteins are integral membrane proteins with four transmembrane spanning ...
 134-236 2.69e-22

HPP family; These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of the alignment is a motif HPP. The function of these proteins is uncertain but they may be transporters.


Pssm-ID: 461506  Cd Length: 122  Bit Score: 88.73  E-value: 2.69e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257718141  134 VAPLGAVSAILFTTPSAPAARKYNMFTAQIGCAAIGVLAFSAFGPS--WLARSTALAASIAFMVITRANHPPAASLPLLF 211
Cdd:pfam04982   2 IASFGASAVLLFGAPESPLAQPRNVVGGHLISALIGVAIAKLFGLSllWLAAALAVALAIALMQLTRTLHPPAGATALLA 81

                          90       100
                  ....*....|....*....|....*
gi 257718141  212 IDGAKLHKLNFWYALFPGAAACILL 236
Cdd:pfam04982  82 VLGGPIHALGWWFVLVPVLLGSLLL 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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