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Conserved domains on  [gi|257635248|emb|CBC83529|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

DC1 domain-containing protein( domain architecture ID 10503954)

DC1 (divergent C1) domain-containing protein similar to Capsicum annuum cysteine/histidine-rich DC1 domain protein CaDC1 that binds both RNA and DNA and is required for plant cell death and defense response

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 297-343 2.20e-07

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 47.37  E-value: 2.20e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 257635248  297 DHPLTLCYgeEKASGKYWCDICERETNPKTWFYTCKDCGITLHVFCV 343
Cdd:pfam03107   4 PHPLTLTG--SPRDGSFTCDACGLKIDGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 45-93 6.59e-07

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 45.83  E-value: 6.59e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 257635248   45 NHHDHRVSFKYPLGPGEWRCGVCWEEIDWSYGAYSCSVCpRYAIHSLCA 93
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSEC-DFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 128-176 5.36e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 40.44  E-value: 5.36e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 257635248  128 FAHEHNLTSLGQGGEESSLCGGCVCPI-GSCTFYKCleSKCSFILHETCA 176
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIdGFFGFYSC--SECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 2-36 7.06e-04

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 37.36  E-value: 7.06e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 257635248    2 PKLISFVCDACGTK--GDRSPYICVQCDFMIfHQKCA 36
Cdd:pfam03107  13 PRDGSFTCDACGLKidGFFGFYSCSECDFVL-HERCA 48
Oxidoreductase_nitrogenase super family cl02775
The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. ...
 233-274 9.11e-03

The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster from which, electrons are transferred to the P-cluster of the MoFe and in turn, to FeMoCo at the site of substrate reduction. The V-nitrogenase requires an iron-vanadium cofactor (FeVco), the iron only-nitrogenase an iron only cofactor (FeFeco). These cofactors are analogous to the FeMoco. The V-nitrogenase has P clusters identical to those of MoFe. Pchlide reductase and chlide reductase participate in the Mg-branch of the tetrapyrrole biosynthetic pathway. Pchlide reductase catalyzes the reduction of the D-ring of Pchlide during the synthesis of chlorophylls (Chl) and bacteriochlorophylls (BChl). Chlide-a reductase catalyzes the reduction of the B-ring of Chlide-a during the synthesis of BChl-a. The Pchlide reductase NB complex is a an N2B2 heterotetramer resembling nitrogenase FeMo, N and B proteins are homologous to the FeMo alpha and beta subunits respectively. The NB complex may serve as a catalytic site for Pchlide reduction and, the ZY complex as a site of chlide reduction, similar to MoFe for nitrogen reduction.


The actual alignment was detected with superfamily member pfam00148:

Pssm-ID: 445915 [Multi-domain]  Cd Length: 398  Bit Score: 38.00  E-value: 9.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 257635248  233 TVPLIHGSH---DHHLLYLKQRFGDVKTCQSCGMDETEVVIGCMK 274
Cdd:pfam00148  16 AVPLVHGPQgcaTYVRLLLTRHFREPIPLATTSLTEKDVVFGGEE 60
 
Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 297-343 2.20e-07

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 47.37  E-value: 2.20e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 257635248  297 DHPLTLCYgeEKASGKYWCDICERETNPKTWFYTCKDCGITLHVFCV 343
Cdd:pfam03107   4 PHPLTLTG--SPRDGSFTCDACGLKIDGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 45-93 6.59e-07

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 45.83  E-value: 6.59e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 257635248   45 NHHDHRVSFKYPLGPGEWRCGVCWEEIDWSYGAYSCSVCpRYAIHSLCA 93
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSEC-DFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 128-176 5.36e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 40.44  E-value: 5.36e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 257635248  128 FAHEHNLTSLGQGGEESSLCGGCVCPI-GSCTFYKCleSKCSFILHETCA 176
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIdGFFGFYSC--SECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 2-36 7.06e-04

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 37.36  E-value: 7.06e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 257635248    2 PKLISFVCDACGTK--GDRSPYICVQCDFMIfHQKCA 36
Cdd:pfam03107  13 PRDGSFTCDACGLKidGFFGFYSCSECDFVL-HERCA 48
Oxidored_nitro pfam00148
Nitrogenase component 1 type Oxidoreductase;
233-274 9.11e-03

Nitrogenase component 1 type Oxidoreductase;


Pssm-ID: 395096 [Multi-domain]  Cd Length: 398  Bit Score: 38.00  E-value: 9.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 257635248  233 TVPLIHGSH---DHHLLYLKQRFGDVKTCQSCGMDETEVVIGCMK 274
Cdd:pfam00148  16 AVPLVHGPQgcaTYVRLLLTRHFREPIPLATTSLTEKDVVFGGEE 60
 
Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 297-343 2.20e-07

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 47.37  E-value: 2.20e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 257635248  297 DHPLTLCYgeEKASGKYWCDICERETNPKTWFYTCKDCGITLHVFCV 343
Cdd:pfam03107   4 PHPLTLTG--SPRDGSFTCDACGLKIDGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 45-93 6.59e-07

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 45.83  E-value: 6.59e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 257635248   45 NHHDHRVSFKYPLGPGEWRCGVCWEEIDWSYGAYSCSVCpRYAIHSLCA 93
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSEC-DFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 128-176 5.36e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 40.44  E-value: 5.36e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 257635248  128 FAHEHNLTSLGQGGEESSLCGGCVCPI-GSCTFYKCleSKCSFILHETCA 176
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIdGFFGFYSC--SECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 2-36 7.06e-04

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 37.36  E-value: 7.06e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 257635248    2 PKLISFVCDACGTK--GDRSPYICVQCDFMIfHQKCA 36
Cdd:pfam03107  13 PRDGSFTCDACGLKidGFFGFYSCSECDFVL-HERCA 48
Oxidored_nitro pfam00148
Nitrogenase component 1 type Oxidoreductase;
233-274 9.11e-03

Nitrogenase component 1 type Oxidoreductase;


Pssm-ID: 395096 [Multi-domain]  Cd Length: 398  Bit Score: 38.00  E-value: 9.11e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 257635248  233 TVPLIHGSH---DHHLLYLKQRFGDVKTCQSCGMDETEVVIGCMK 274
Cdd:pfam00148  16 AVPLVHGPQgcaTYVRLLLTRHFREPIPLATTSLTEKDVVFGGEE 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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