|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
42-768 |
1.91e-16 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 84.73 E-value: 1.91e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 42 KRLKDAGFDEQSIKNRDKAALIAYIAKLESEVYDYQHNMGLLLLEKNELSSQYEEIKASVDESDlthmreksayvSALAE 121
Cdd:TIGR02169 279 KKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE-----------REIEE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 122 AKKREESLKkdvgiakECISSLEKTLHEMRAECAETKVSAGSTMSEahvmIEDALKKLADAEAKMraaEALQAEANRYHR 201
Cdd:TIGR02169 348 ERKRRDKLT-------EEYAELKEELEDLRAELEEVDKEFAETRDE----LKDYREKLEKLKREI---NELKRELDRLQE 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 202 IAERKLKEVESREDDLTR---RLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELA 278
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGieaKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 279 ELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEVC--------FYSHNSLLFLV----------LHYRSSKK-- 338
Cdd:TIGR02169 494 EAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGeryataieVAAGNRLNNVVveddavakeaIELLKRRKag 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 339 ---FLG-DKIAVSERESSLLKKEQELLVA------EEKIAS------KESELIQNVLANQEVILRKRKSDVEAELECKSK 402
Cdd:TIGR02169 574 ratFLPlNKMRDERRDLSILSEDGVIGFAvdlvefDPKYEPafkyvfGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSG 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 403 SVeVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEK 482
Cdd:TIGR02169 654 AM-TGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 483 ERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSE-TSELSTLEMKLKEELDDLRAQKLEML-AEADRLKVEKAKFEA 560
Cdd:TIGR02169 733 EKLKERLEELEEDLSSLEQEIENVKSELKELEARIEElEEDLHKLEEALNDLEARLSHSRIPEIqAELSKLEEEVSRIEA 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 561 EWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQhKNDVESLNREREEFMNKmVEEHSEWLSKIQRE 640
Cdd:TIGR02169 813 RLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL-NGKKEELEEELEELEAA-LRDLESRLGDLKKE 890
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 641 RADF---LLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEK-ELEHVQVELKRLDAERLEI 716
Cdd:TIGR02169 891 RDELeaqLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEElSLEDVQAELQRVEEEIRAL 970
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 257640938 717 KLDRERREREWAELKDSVEELKVQREKLEtqrhmlrAERDEIRHEIEELKKL 768
Cdd:TIGR02169 971 EPVNMLAIQEYEEVLKRLDELKEKRAKLE-------EERKAILERIEEYEKK 1015
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
172-774 |
1.88e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 81.52 E-value: 1.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 172 IEDALKKLADAEAKMRAAEALQAE--------------ANRYHRI-AERKLKEVES---REDDLTRRLASFKSECETKEN 233
Cdd:COG1196 174 KEEAERKLEATEENLERLEDILGElerqleplerqaekAERYRELkEELKELEAELlllKLRELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 234 EMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCA 313
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 314 KREEvcfyshnsllflvlhyrsskkflgDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDV 393
Cdd:COG1196 334 ELEE------------------------ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 394 EAELEcksksvEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKsfnLDEKEKNLVATEEDINR 473
Cdd:COG1196 390 EALRA------AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA---LEEAAEEEAELEEEEEA 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 474 KTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSatQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKV 553
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLL--LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 554 EKAKFEAEWEHIDVKREE--LRKEAEYITRQ---REAFSMYLKDERDNIKEERDALRNQHK--NDVESLNREREEFMNKM 626
Cdd:COG1196 539 ALEAALAAALQNIVVEDDevAAAAIEYLKAAkagRATFLPLDKIRARAALAAALARGAIGAavDLVASDLREADARYYVL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 627 VEEHSEWLSKIQRERADfllGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVEL 706
Cdd:COG1196 619 GDTLLGRTLVAARLEAA---LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257640938 707 KRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVA 774
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE 763
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
62-765 |
1.33e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.48 E-value: 1.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 62 LIAYIAKLESEVYDYQHNMGLLLLEKNELSSQYEEIKASVDESDlthmREKSAYVSALAEAKKREESLKKDVGIAKECIS 141
Cdd:TIGR02168 272 LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE----RQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 142 SLEKTLHEMRAECAE---TKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEA-LQAEANRYHRIAERKLKEVESREDDL 217
Cdd:TIGR02168 348 ELKEELESLEAELEEleaELEELESRLEELEEQLETLRSKVAQLELQIASLNNeIERLEARLERLEDRRERLQQEIEELL 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 218 TRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDhifARSQELAELEKGLDTAKTTFEEERKA 297
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALD---AAERELAQLQARLDSLERLQENLEGF 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 298 FEDKKSNLE-------------------------IALALCAKREEVCFYSHNSLLFLVLHYRSSKK----------FLGD 342
Cdd:TIGR02168 505 SEGVKALLKnqsglsgilgvlselisvdegyeaaIEAALGGRLQAVVVENLNAAKKAIAFLKQNELgrvtflpldsIKGT 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 343 KIAVSERESsLLKKEQELLVAEE--KIASKESELIQNVLA------------NQEVILRKRKSDVEAELEC--------- 399
Cdd:TIGR02168 585 EIQGNDREI-LKNIEGFLGVAKDlvKFDPKLRKALSYLLGgvlvvddldnalELAKKLRPGYRIVTLDGDLvrpggvitg 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 400 KSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLE 479
Cdd:TIGR02168 664 GSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVE 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 480 DEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFE 559
Cdd:TIGR02168 744 QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR 823
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 560 AEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKnDVESLNREREEfmnkmVEEHSEWLSKIQR 639
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES-ELEALLNERAS-----LEEALALLRSELE 897
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 640 ERADFLLGIEMQKRELEYCIENKREELENSSRDREKA----------FEQEKKLEEERIQSLKEMAEKELEHVQVELKRL 709
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLevridnlqerLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*.
gi 257640938 710 DAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEEL 765
Cdd:TIGR02168 978 ENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARER 1033
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
172-765 |
2.86e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 2.86e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 172 IEDALKKLA-DAEAKMRAAEaLQAEANRYH--------RIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTL 242
Cdd:COG1196 198 LERQLEPLErQAEKAERYRE-LKEELKELEaellllklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 243 NERRKSLQ--QEHERLLDAQVS-LNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEvc 319
Cdd:COG1196 277 EELELELEeaQAEEYELLAELArLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE-- 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 320 fyshnslLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESElIQNVLANQEVILRKRKSDVEAELEC 399
Cdd:COG1196 355 -------EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ-LEELEEAEEALLERLERLEEELEEL 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 400 KSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQS--RALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTM 477
Cdd:COG1196 427 EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEllEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 478 LEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEmLAEADRLKVEKAK 557
Cdd:COG1196 507 LEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG-RATFLPLDKIRAR 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 558 FEAEWEHIDVKREELRKEAEYITRQREAFsmYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKI 637
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADAR--YYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLT 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 638 QRERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIK 717
Cdd:COG1196 664 GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLE 743
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257640938 718 ---------LDRERREREWAELKDSVEELKVQREKLE---------------------TQRHMLRAERDEIRHEIEEL 765
Cdd:COG1196 744 eeelleeeaLEELPEPPDLEELERELERLEREIEALGpvnllaieeyeeleerydflsEQREDLEEARETLEEAIEEI 821
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
172-768 |
3.66e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 3.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 172 IEDALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQ 251
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 252 EHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEVcfyshnsllfLVL 331
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE----------LEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 332 HYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESK 411
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 412 RRAwELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLE 491
Cdd:COG1196 464 LLA-ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 492 LQQSLtSLEDKRKRVDSATQKLEALKSETSElstlemklkeelddlRAQKLEM-LAEADRLKVEKAKFEAEWEHIDVKRE 570
Cdd:COG1196 543 ALAAA-LQNIVVEDDEVAAAAIEYLKAAKAG---------------RATFLPLdKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 571 ELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEH-SEWLSKIQRERADFLLGIE 649
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSrRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 650 MQKRELEYCIENKREELENSSRDREKafEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAE 729
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEA--EEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 257640938 730 LKDSVEELKVQREKLET-------------QRH-MLRAERDEIRHEIEELKKL 768
Cdd:COG1196 765 LERELERLEREIEALGPvnllaieeyeeleERYdFLSEQREDLEEARETLEEA 817
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
89-766 |
3.95e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.94 E-value: 3.95e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 89 ELSSQYEEIKASVDESDLTHMREK-SAYVSALAEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAEtkvsAGSTMSE 167
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEELREElEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE----LQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 168 AHVMIEDALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKEN---EMVIERQTLNE 244
Cdd:TIGR02168 293 LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAeleELEAELEELES 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 245 RRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIA-----LALCAKREEVC 319
Cdd:TIGR02168 373 RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKelqaeLEELEEELEEL 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 320 FYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVI--LRKRKSD----- 392
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLsgILGVLSElisvd 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 393 ------VEAELECKSKSVEVE-IESKRRAWE------------LREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEK 453
Cdd:TIGR02168 533 egyeaaIEAALGGRLQAVVVEnLNAAKKAIAflkqnelgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDP 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 454 SF---------------NLDE---------KEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKR---- 505
Cdd:TIGR02168 613 KLrkalsyllggvlvvdDLDNalelakklrPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEEleek 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 506 VDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREA 585
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 586 FSMYLKDERDNIkEERDALRNQHKNDVESLNREREEFmnkmveehSEWLSKIQRERADFLLGIEMQKRELEYCienkREE 665
Cdd:TIGR02168 773 AEEELAEAEAEI-EELEAQIEQLKEELKALREALDEL--------RAELTLLNEEAANLRERLESLERRIAAT----ERR 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 666 LENSSRDREKAFEQEKKLEEER--IQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREK 743
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIeeLEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
|
730 740
....*....|....*....|...
gi 257640938 744 LETQRHMLRAERDEIRHEIEELK 766
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQ 942
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
93-774 |
5.11e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 74.02 E-value: 5.11e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 93 QYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVGIAKEcisslektlhemraecaETKVSAGSTMSEAHVMI 172
Cdd:PTZ00121 1068 QDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEE-----------------ARKAEEAKKKAEDARKA 1130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 173 EDALKkladAEAKMRAAEALQAEANRYHRIAERKlkeVESREDDLTRRLASFKsecETKENEMVIERQTLNERRKSlqQE 252
Cdd:PTZ00121 1131 EEARK----AEDARKAEEARKAEDAKRVEIARKA---EDARKAEEARKAEDAK---KAEAARKAEEVRKAEELRKA--ED 1198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 253 HERLLDAQVSLNQREDHIFARSQELAELE--KGLDTAKTTFEEERKAfEDKKSNLEIalalcaKREEVCFYSHNSLLFLV 330
Cdd:PTZ00121 1199 ARKAEAARKAEEERKAEEARKAEDAKKAEavKKAEEAKKDAEEAKKA-EEERNNEEI------RKFEEARMAHFARRQAA 1271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 331 LHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEV-EIE 409
Cdd:PTZ00121 1272 IKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAaKAE 1351
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 410 SKRRAWELREVDIKQREDLVG---EKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLR 486
Cdd:PTZ00121 1352 AEAAADEAEAAEEKAEAAEKKkeeAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 487 KLDlelqQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEEL-----DDLRAQKLEMLAEADRLKVEKAKFEAE 561
Cdd:PTZ00121 1432 KAD----EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAkkkaeEAKKADEAKKKAEEAKKKADEAKKAAE 1507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 562 WEHidvKREELRK-----------EAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEfmNKMVEEH 630
Cdd:PTZ00121 1508 AKK---KADEAKKaeeakkadeakKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED--KNMALRK 1582
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 631 SEWLSKIQRERadfllgIEMQKRELEYCIENKREELENSSRDREKAfEQEKKLEEERIQSLKEMAEKELEHVQVELKRLD 710
Cdd:PTZ00121 1583 AEEAKKAEEAR------IEEVMKLYEEEKKMKAEEAKKAEEAKIKA-EELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA 1655
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 257640938 711 AERLEIKLDRERREREwaELKDSVEELKVQREKLETQRHMLRAERDEIR-------HEIEELKKLENLKVA 774
Cdd:PTZ00121 1656 EEENKIKAAEEAKKAE--EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKkaeelkkKEAEEKKKAEELKKA 1724
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
85-789 |
9.72e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.87 E-value: 9.72e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 85 LEKNELSSQYEEIKASVDESDLTHMrEKSAYVSALAEAKKREESLKK--------DVGIAKECISSLEKTLHEMRAECAE 156
Cdd:PTZ00121 1084 KEDNRADEATEEAFGKAEEAKKTET-GKAEEARKAEEAKKKAEDARKaeearkaeDARKAEEARKAEDAKRVEIARKAED 1162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 157 TKVSAGSTMSEAHVMIEDALK--------KLADAEAKMRAAEALQAEANRyhRIAERKLKEVESREDDLTRRLASFKSEC 228
Cdd:PTZ00121 1163 ARKAEEARKAEDAKKAEAARKaeevrkaeELRKAEDARKAEAARKAEEER--KAEEARKAEDAKKAEAVKKAEEAKKDAE 1240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 229 ETKENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQEL--------AELEKGLDTAKTTFEEERKAFED 300
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKkkadeakkAEEKKKADEAKKKAEEAKKADEA 1320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 301 KKSNLEI---ALALCAKREEVCFYSHnsllflVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQN 377
Cdd:PTZ00121 1321 KKKAEEAkkkADAAKKKAEEAKKAAE------AAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 378 VLANQEVILRKRKSDVEAELECKSKSVEVE--IESKRRAWELRevdiKQREDLVGEKEHDLEVQSRALAEKEKDITEKSF 455
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKkkAEEKKKADEAK----KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 456 NLDEKEKNlvaTEEdiNRKTTMLEDEKERLRKLDLELQQSltslEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELD 535
Cdd:PTZ00121 1471 KADEAKKK---AEE--AKKADEAKKKAEEAKKKADEAKKA----AEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 536 DLRAQKLEMLAEADRL-------KVEKAKFEAEWEHIDVKREELRKEAEyitRQREAFSMYLKDERDNIKEERDALRNQH 608
Cdd:PTZ00121 1542 AEEKKKADELKKAEELkkaeekkKAEEAKKAEEDKNMALRKAEEAKKAE---EARIEEVMKLYEEEKKMKAEEAKKAEEA 1618
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 609 KNDVESLNRERE-----EFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEyciENKR--EELENSSRDREKAFEQEK 681
Cdd:PTZ00121 1619 KIKAEELKKAEEekkkvEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE---EDKKkaEEAKKAEEDEKKAAEALK 1695
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 682 KLEEE--RIQSLKEMAEKELEHVQvELKRLDAERL----EIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAER 755
Cdd:PTZ00121 1696 KEAEEakKAEELKKKEAEEKKKAE-ELKKAEEENKikaeEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
|
730 740 750
....*....|....*....|....*....|....
gi 257640938 756 DEIRHEIEELKKLENLKVALDDMSMAKMQLSNLE 789
Cdd:PTZ00121 1775 KEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFA 1808
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
85-681 |
1.67e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 72.10 E-value: 1.67e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 85 LEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVGIAKEcisslektlhemRAECAETKVSAGST 164
Cdd:PTZ00121 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK------------KAEEAKKAAEAAKA 1350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 165 MSEAhvmiedALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDdltrrlASFKSECETKENEMVIERQTLNE 244
Cdd:PTZ00121 1351 EAEA------AADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE------AKKKAEEDKKKADELKKAAAAKK 1418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 245 RRKSLQQEHERLLDAQVSLNQREDHIFA-RSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEVCFYSH 323
Cdd:PTZ00121 1419 KADEAKKKAEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 324 NSLLflvlhyrsSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRK--RKSDVEAELECKS 401
Cdd:PTZ00121 1499 ADEA--------KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEelKKAEEKKKAEEAK 1570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 402 KSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRAL--AEKEKDITEKSFNLDEKEK---NLVATEEDINRKTT 476
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAkkAEEAKIKAEELKKAEEEKKkveQLKKKEAEEKKKAE 1650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 477 MLEDEKE----RLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLE-MKLKEELDDLRAQKLEMLAEADRL 551
Cdd:PTZ00121 1651 ELKKAEEenkiKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEeLKKKEAEEKKKAEELKKAEEENKI 1730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 552 KVEKAKFEAEWEhiDVKREELRKEAEyitrQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHS 631
Cdd:PTZ00121 1731 KAEEAKKEAEED--KKKAEEAKKDEE----EKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIF 1804
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 257640938 632 EWLSKIQRERADFLLGIEMQKrELEYCIENKREELENSSRDREKAFEQEK 681
Cdd:PTZ00121 1805 DNFANIIEGGKEGNLVINDSK-EMEDSAIKEVADSKNMQLEEADAFEKHK 1853
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
459-802 |
2.16e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 459 EKEKNLVATEEDINRKTTMLEDEKERLRKL------------------DLELQQSLTSLEDKRKRVDSATQKLEALKSET 520
Cdd:TIGR02168 176 ETERKLERTRENLDRLEDILNELERQLKSLerqaekaerykelkaelrELELALLVLRLEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 521 SELSTLEMKLKEELDDLRAQKLEMLAEADR-------LKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAfsmyLKDE 593
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEElqkelyaLANEISRLEQQKQILRERLANLERQLEELEAQLEE----LESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 594 RDNIKEERDALRNQhkndVESLNREREEFMNKMVEEHSEWlskiqreradfllgiemqkRELEYCIENKREELENSSRDR 673
Cdd:TIGR02168 332 LDELAEELAELEEK----LEELKEELESLEAELEELEAEL-------------------EELESRLEELEEQLETLRSKV 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 674 EKAFEQEKKLEEERIQslkemAEKELEHVQVELKRLDAERLEikLDRERREREWAELKDSVEELKVQREKLETQRHMLRA 753
Cdd:TIGR02168 389 AQLELQIASLNNEIER-----LEARLERLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 257640938 754 ERDEIRHEIEELKklENLKVALDDMSMAKMQLSNLERSWEKVSALKQKV 802
Cdd:TIGR02168 462 ALEELREELEEAE--QALDAAERELAQLQARLDSLERLQENLEGFSEGV 508
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
203-813 |
2.80e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 2.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 203 AERKLKEVE---SREDDLT----RRLASFKSECETKEnemvierqtlneRRKSLQQEhERLLDAQVSLNQREDhifaRSQ 275
Cdd:COG1196 177 AERKLEATEenlERLEDILgeleRQLEPLERQAEKAE------------RYRELKEE-LKELEAELLLLKLRE----LEA 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 276 ELAELEKGLDTAKTTFEEERKAFEDKKSNLEialalcAKREEvcfyshnsllflvlHYRSSKKFLGDKIAVSERESSLLK 355
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELE------ELRLE--------------LEELELELEEAQAEEYELLAELAR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 356 KEQELLVAEEKIASKESELIQnvLANQEVILRKRKSDVEAELEckskSVEVEIESKRRAWELREVDIKQREDLVGEKEhd 435
Cdd:COG1196 300 LEQDIARLEERRRELEERLEE--LEEELAELEEELEELEEELE----ELEEELEEAEEELEEAEAELAEAEEALLEAE-- 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 436 levqsRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEA 515
Cdd:COG1196 372 -----AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 516 LKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSM-----YL 590
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLrglagAV 526
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 591 KDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVeehsEWLSKIQRERADFLLGIEMQKRELEYCIENKREELE-NS 669
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAI----EYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAaVD 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 670 SRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRh 749
Cdd:COG1196 603 LVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAEL- 681
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 257640938 750 mLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSALKQKVVSRDDELDLQN 813
Cdd:COG1196 682 -EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEE 744
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
58-796 |
5.09e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 5.09e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 58 DKAALIAYIAKLESEVYDYQHNMGLLLLEKNELSSQYEEIKASVDESDlthmREKSAYVSALAEAKKREESLKKDVGIAK 137
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE----EEIEELQKELYALANEISRLEQQKQILR 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 138 ECISSLEKTLHEMRAECAETKVSAGSTMSEAHVM---IEDALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESRE 214
Cdd:TIGR02168 309 ERLANLERQLEELEAQLEELESKLDELAEELAELeekLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 215 DDLTRRLASFKSECETKENEMvierQTLNERRKSLQQEHERLLDAQVSLNQREDHifarsQELAELEKGLDTAKTTFEEE 294
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARL----ERLEDRRERLQQEIEELLKKLEEAELKELQ-----AELEELEEELEELQEELERL 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 295 RKAFEDKKSNLEIA-LALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERE---------SSLLKKEQELLVAE 364
Cdd:TIGR02168 460 EEALEELREELEEAeQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSglsgilgvlSELISVDEGYEAAI 539
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 365 EKIASkesELIQNVLANQeviLRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRA-- 442
Cdd:TIGR02168 540 EAALG---GRLQAVVVEN---LNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDpk 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 443 -------------LAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERlRKLDLELQQSLTSLEDKRKR---- 505
Cdd:TIGR02168 614 lrkalsyllggvlVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKT-NSSILERRREIEELEEKIEEleek 692
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 506 VDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREA 585
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 586 FSMYLKDERDNIkEERDALRNQHKNDVESLNREREEFmnkmveehSEWLSKIQRERADFLLGIEMQKRELEYCienkREE 665
Cdd:TIGR02168 773 AEEELAEAEAEI-EELEAQIEQLKEELKALREALDEL--------RAELTLLNEEAANLRERLESLERRIAAT----ERR 839
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 666 LENSSRDREKAFEQEKKLEEER--IQSLKEMAEKELEHVQVELKRLDAERleikldrerrerewaelkdsvEELKVQREK 743
Cdd:TIGR02168 840 LEDLEEQIEELSEDIESLAAEIeeLEELIEELESELEALLNERASLEEAL---------------------ALLRSELEE 898
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*
gi 257640938 744 LETQRHMLRAERDEIRHEIEEL-KKLENLKVALDDmsmAKMQLSNL-ERSWEKVS 796
Cdd:TIGR02168 899 LSEELRELESKRSELRRELEELrEKLAQLELRLEG---LEVRIDNLqERLSEEYS 950
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
120-778 |
1.49e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 69.01 E-value: 1.49e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 120 AEAKKREESLKK--DVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEAN 197
Cdd:PTZ00121 1274 AEEARKADELKKaeEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 198 RYHRIAERKLKEVESreDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDhifarSQEL 277
Cdd:PTZ00121 1354 AAADEAEAAEEKAEA--AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADE-----AKKK 1426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 278 AELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREevcfyshnsllflvlhyrsskkflgdkiAVSERESSLLKKE 357
Cdd:PTZ00121 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK----------------------------AEEAKKADEAKKK 1478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 358 QELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEV-EIESKRRAWELREVDIKQREDLVGEKEHDL 436
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAkKAEEAKKADEAKKAEEKKKADELKKAEELK 1558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 437 EVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEAL 516
Cdd:PTZ00121 1559 KAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQL 1638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 517 KSETSE--LSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHidvKREELRKEAEYITRQREAFSMYLKDER 594
Cdd:PTZ00121 1639 KKKEAEekKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK---KAAEALKKEAEEAKKAEELKKKEAEEK 1715
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 595 DNIKEERDAlRNQHKNDVESLNREREEFMNKMVE--EHSEWLSKIQRERADFLLGIEMQKRELEYCIEnkrEELENSSRD 672
Cdd:PTZ00121 1716 KKAEELKKA-EEENKIKAEEAKKEAEEDKKKAEEakKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE---EELDEEDEK 1791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 673 REKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLR 752
Cdd:PTZ00121 1792 RRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFN 1871
|
650 660
....*....|....*....|....*..
gi 257640938 753 AERDEIRHEIEELKKL-ENLKVALDDM 778
Cdd:PTZ00121 1872 KEKDLKEDDEEEIEEAdEIEKIDKDDI 1898
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
340-778 |
4.63e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 66.99 E-value: 4.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 340 LGDKIAVSERESSLLKKEQELLVAEEKIASKESEliqnVLANQEVILRKRKSDVEAELECKSKSVEV---EIESKRRAWE 416
Cdd:PRK02224 277 LAEEVRDLRERLEELEEERDDLLAEAGLDDADAE----AVEARREELEDRDEELRDRLEECRVAAQAhneEAESLREDAD 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 417 LREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSL 496
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 497 TSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIdVKREELRKEA 576
Cdd:PRK02224 433 ATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA-EDLVEAEDRI 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 577 EYITRQREAFSMYLKDERDNIKEERDALRNQHKN--DVESLNREREEFMNKM---VEEHSEWLSKIQRERADFLLGIEMQ 651
Cdd:PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEELRERaaELEAEAEEKREAAAEAeeeAEEAREEVAELNSKLAELKERIESL 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 652 KReleycIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKrLDAERLE-IKLDRERREREWAEL 730
Cdd:PRK02224 592 ER-----IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAE-FDEARIEeAREDKERAEEYLEQV 665
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 257640938 731 KDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDM 778
Cdd:PRK02224 666 EEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALEAL 713
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
379-711 |
5.63e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.55 E-value: 5.63e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 379 LANQEVILRKRKSDVEAELECKSKSVEV---EIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSF 455
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDasrKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 456 NLDEKEKNLVATEEDINRKTTMLEDEKERlrkldlELQQSLTSLEDKRKRVDSATQKLEA-LKSETSELSTLEMK---LK 531
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLEARLSHSRIP------EIQAELSKLEEEVSRIEARLREIEQkLNRLTLEKEYLEKEiqeLQ 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 532 EELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNI---------KEERD 602
Cdd:TIGR02169 840 EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIeeleaqiekKRKRL 919
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 603 ALRNQHKNDVESLNREREEFMNKMVEEHSEWLS--KIQRERadflLGIEMQKRELEYCIENKREELENSSRDREKAFEQE 680
Cdd:TIGR02169 920 SELKAKLEALEEELSEIEDPKGEDEEIPEEELSleDVQAEL----QRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKR 995
|
330 340 350
....*....|....*....|....*....|.
gi 257640938 681 KKLEEERIQSLKEMAEKELEHVQVELKRLDA 711
Cdd:TIGR02169 996 AKLEEERKAILERIEEYEKKKREVFMEAFEA 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
247-789 |
8.92e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 8.92e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 247 KSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEvcfyshnsl 326
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQ--------- 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 327 lfLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILrKRKSDVEAELECKSKSVEV 406
Cdd:TIGR02168 303 --QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL-EELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 407 EIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEedINRKTTMLEDEKERLR 486
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAE--LEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 487 KLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKV--EKAKFEAEWE- 563
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlsELISVDEGYEa 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 564 -----------HIDVKREELRKEAEYITRQREAFS---MYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEE 629
Cdd:TIGR02168 538 aieaalggrlqAVVVENLNAAKKAIAFLKQNELGRvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKA 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 630 HSEWLSK------------------------------------IQRERADFLLGIEMQKRELEYCiENKREELENSSRDR 673
Cdd:TIGR02168 618 LSYLLGGvlvvddldnalelakklrpgyrivtldgdlvrpggvITGGSAKTNSSILERRREIEEL-EEKIEELEEKIAEL 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 674 EKAFeQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRA 753
Cdd:TIGR02168 697 EKAL-AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
570 580 590
....*....|....*....|....*....|....*.
gi 257640938 754 ERDEIRHEIEELKklENLKVALDDMSMAKMQLSNLE 789
Cdd:TIGR02168 776 ELAEAEAEIEELE--AQIEQLKEELKALREALDELR 809
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
83-712 |
1.08e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 62.63 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 83 LLLEKNELSSQYEEIKASVDE-----SDLTHMREKSAYVSALAEAKKREESLKKDVGIAKECISSL-----EKTLHEMRA 152
Cdd:COG4913 216 YMLEEPDTFEAADALVEHFDDlerahEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALrlwfaQRRLELLEA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 153 ECAETKVSAGSTMSEahvmIEDALKKLADAEAKMRAAEAlQAEANRYHRIA--ERKLKEVESREDDLTRRLASFKSECET 230
Cdd:COG4913 296 ELEELRAELARLEAE----LERLEARLDALREELDELEA-QIRGNGGDRLEqlEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 231 KENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAElekgldtAKTTFEEERKAFEDKKSNL----- 305
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRR-------ELRELEAEIASLERRKSNIparll 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 306 ----EIALALCAKREEVCF--------------------YSHN---SLLFLVLHYRSSKKFL----------GDKIAVSE 348
Cdd:COG4913 444 alrdALAEALGLDEAELPFvgelievrpeeerwrgaierVLGGfalTLLVPPEHYAAALRWVnrlhlrgrlvYERVRTGL 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 349 RESSLLKKEQELLVaeEKIASKESEL---IQNVLANQEVIlrkRKSDVEAELECKSKSVEVE--IESKRRAWELREVDIK 423
Cdd:COG4913 524 PDPERPRLDPDSLA--GKLDFKPHPFrawLEAELGRRFDY---VCVDSPEELRRHPRAITRAgqVKGNGTRHEKDDRRRI 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 424 QREDLVGEKehdlevQSRALAEKEKDITEksfnLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDlELQQSLTSLEDKR 503
Cdd:COG4913 599 RSRYVLGFD------NRAKLAALEAELAE----LEEELAEAEERLEALEAELDALQERREALQRLA-EYSWDEIDVASAE 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 504 KRVDSATQKLEALKSETSELSTLEmklkEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQR 583
Cdd:COG4913 668 REIAELEAELERLDASSDDLAALE----EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 584 EAFSMYLKDER-------DNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADfLLGIEmqkrelE 656
Cdd:COG4913 744 RLELRALLEERfaaalgdAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDAD-LESLP------E 816
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 257640938 657 YciENKREELENSS--RDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAE 712
Cdd:COG4913 817 Y--LALLDRLEEDGlpEYEERFKELLNENSIEFVADLLSKLRRAIREIKERIDPLNDS 872
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
389-789 |
1.61e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 1.61e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 389 RKSDVEAELEcksksvEVEIESKRRAWELREVdIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATE 468
Cdd:TIGR02169 171 KKEKALEELE------EVEENIERLDLIIDEK-RQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 469 EDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQklealkSETSELSTLEMKLKEELDDLRAQKLEMLAEA 548
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE------EEQLRVKEKIGELEAEIASLERSIAEKEREL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 549 DRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAfsmyLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVE 628
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK----LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 629 ehsewlskiqreradfllgIEMQKRELEycienkreelenssrdrekafeqEKKLEEERIQSLKEMAEKELEHVQVELKR 708
Cdd:TIGR02169 394 -------------------LEKLKREIN-----------------------ELKRELDRLQEELQRLSEELADLNAAIAG 431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 709 LDAERLEIKldrerrerewAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLEnlkvalDDMSMAKMQLSNL 788
Cdd:TIGR02169 432 IEAKINELE----------EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE------KELSKLQRELAEA 495
|
.
gi 257640938 789 E 789
Cdd:TIGR02169 496 E 496
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
437-768 |
1.65e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.98 E-value: 1.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 437 EVQSRALAEKEKDITEKsfnLDEKEKNLVATEEDINRkttmLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEAL 516
Cdd:PRK02224 191 QLKAQIEEKEEKDLHER---LNGLESELAELDEEIER----YEEQREQARETRDEADEVLEEHEERREELETLEAEIEDL 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 517 KSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYItrqreafsmylkdeRDN 596
Cdd:PRK02224 264 RETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL--------------RDR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 597 IKEERDALRnQHKNDVESLN---REREEFMNKMVEEHSEWLSKIQRERADFLLGiEMQKRELEYCIENKREELENSSRDR 673
Cdd:PRK02224 330 LEECRVAAQ-AHNEEAESLRedaDDLEERAEELREEAAELESELEEAREAVEDR-REEIEELEEEIEELRERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 674 EKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERL--EIKLDRERREREWAELKDSVEELKVQREKLETQRHML 751
Cdd:PRK02224 408 GNAEDFLEELREERDELREREAELEATLRTARERVEEAEALleAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDL 487
|
330
....*....|....*..
gi 257640938 752 RAERDEIRHEIEELKKL 768
Cdd:PRK02224 488 EEEVEEVEERLERAEDL 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
276-604 |
4.35e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 4.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 276 ELAELEKGLDTAKTTFEE---ERKAFEDKKSNLEIALALCAKREEVCFYSHnsllflvlhyRSSKKFLGDKIAVSERESS 352
Cdd:TIGR02169 178 ELEEVEENIERLDLIIDEkrqQLERLRREREKAERYQALLKEKREYEGYEL----------LKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 353 LLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEK 432
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 433 EHDLEVQSRALAEKEKDITEKsfnldEKEKNLVATEedinrkttmLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQK 512
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIEEE-----RKRRDKLTEE---------YAELKEELEDLRAELEEVDKEFAETRDELKDYREK 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 513 LEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAfsmyLKD 592
Cdd:TIGR02169 394 LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK----YEQ 469
|
330
....*....|..
gi 257640938 593 ERDNIKEERDAL 604
Cdd:TIGR02169 470 ELYDLKEEYDRV 481
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
407-800 |
1.93e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 58.24 E-value: 1.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 407 EIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEknLVATEEDINRKTTMLEDEKERLR 486
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP--LYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 487 KLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMK-LKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHI 565
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQdLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 566 DVKREELRKEAEYITRQREAFSM---------------------------------------YLKDERDNIKEERDALRN 606
Cdd:COG4717 233 ENELEAAALEERLKEARLLLLIAaallallglggsllsliltiagvlflvlgllallflllaREKASLGKEAEELQALPA 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 607 QHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELEN--------SSRDREKAFE 678
Cdd:COG4717 313 LEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAllaeagveDEEELRAALE 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 679 QEKKLEE--ERIQSLKEMAEKELEHVQVELKRLDAERLEIKLdrerrerewaelkdsvEELKVQREKLETQRHMLRAERD 756
Cdd:COG4717 393 QAEEYQElkEELEELEEQLEELLGELEELLEALDEEELEEEL----------------EELEEELEELEEELEELREELA 456
|
410 420 430 440
....*....|....*....|....*....|....*....|....
gi 257640938 757 EIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSALKQ 800
Cdd:COG4717 457 ELEAELEQLEEDGELAELLQELEELKAELRELAEEWAALKLALE 500
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
62-780 |
4.55e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.44 E-value: 4.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 62 LIAYIAK--LESEVYDYQHNMGLLLLEKNELSSQYEEIKASVDESDL---THMREKSAYVSALAEAKKREESLKKDVGia 136
Cdd:pfam15921 67 IIAYPGKehIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIdlqTKLQEMQMERDAMADIRRRESQSQEDLR-- 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 137 keciSSLEKTLHEMRAecaeTKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEanrYHRIAERKLKEVESREDD 216
Cdd:pfam15921 145 ----NQLQNTVHELEA----AKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVD---FEEASGKKIYEHDSMSTM 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 217 LTRRLASFKS----ECETKENEMVIERQTLNERRKSLQQEHERLLdaQVSLNQREDHIfarSQELAELEKGLDTAKTTFE 292
Cdd:pfam15921 214 HFRSLGSAISkilrELDTEISYLKGRIFPVEDQLEALKSESQNKI--ELLLQQHQDRI---EQLISEHEVEITGLTEKAS 288
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 293 EERKAFEDKKSNLEIaLALCAKREEVCFYSHNSLL-----FLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKI 367
Cdd:pfam15921 289 SARSQANSIQSQLEI-IQEQARNQNSMYMRQLSDLestvsQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQ 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 368 ASKESELIQNVLANQEVILRKRKSDVEAELECKSK------SVEVEIESKRRAWELREVDIKQREDLV----GEKEHDLE 437
Cdd:pfam15921 368 FSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdrdtGNSITIDHLRRELDDRNMEVQRLEALLkamkSECQGQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 438 VQSRALAEKEKDIteksfnldekeknlvateEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLE--- 514
Cdd:pfam15921 448 RQMAAIQGKNESL------------------EKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQeke 509
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 515 -ALKSETSELSTLEMKLkeeldDLRAQKLEMLA-EADRLKVEKAKFEA---EWEHIDVKREELRKEAEYITR-------- 581
Cdd:pfam15921 510 rAIEATNAEITKLRSRV-----DLKLQELQHLKnEGDHLRNVQTECEAlklQMAEKDKVIEILRQQIENMTQlvgqhgrt 584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 582 ------QREAFSMYLKDERDNIKE------ERDALRNQHKNDVESLNREREEFMNKMvEEHSEWLSKIQRERADFLLGIE 649
Cdd:pfam15921 585 agamqvEKAQLEKEINDRRLELQEfkilkdKKDAKIRELEARVSDLELEKVKLVNAG-SERLRAVKDIKQERDQLLNEVK 663
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 650 MQKRELEYCIE----------NKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVEL---KRLDAERLEI 716
Cdd:pfam15921 664 TSRNELNSLSEdyevlkrnfrNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMgmqKQITAKRGQI 743
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 257640938 717 KLDRERREREWAELKDSVEE---LKVQREKLETQRHMLRAERDEIRHEIEELK--------KLENLKVALDDMSM 780
Cdd:pfam15921 744 DALQSKIQFLEEAMTNANKEkhfLKEEKNKLSQELSTVATEKNKMAGELEVLRsqerrlkeKVANMEVALDKASL 818
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
172-765 |
1.15e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 1.15e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 172 IEDALKKLADAEAKMRAAEALQAEANRYHriAERKLKEVESREDDLTRRLASFKSECETKENEmvieRQTLNERRKSLQQ 251
Cdd:COG4913 257 IRELAERYAAARERLAELEYLRAALRLWF--AQRRLELLEAELEELRAELARLEAELERLEAR----LDALREELDELEA 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 252 EH-----ERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEvcfyshnsl 326
Cdd:COG4913 331 QIrgnggDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELE--------- 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 327 lflvlhyrsskkflgdkiAVSERESSLLKKEQELlvaEEKIASKESELIQnvlanqeviLRKRKSDVEAEL--------- 397
Cdd:COG4913 402 ------------------ALEEALAEAEAALRDL---RRELRELEAEIAS---------LERRKSNIPARLlalrdalae 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 398 ECKSKSVE-------VEIESKRRAWE------------------------LREVD-IKQREDLVGEKEHDLEVQSRALAE 445
Cdd:COG4913 452 ALGLDEAElpfvgelIEVRPEEERWRgaiervlggfaltllvppehyaaaLRWVNrLHLRGRLVYERVRTGLPDPERPRL 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 446 KEKDITEKsfnLDEKEKNL----------------VATEEDINR------KTTMLEDEKERLRKldlelqqsltsleDKR 503
Cdd:COG4913 532 DPDSLAGK---LDFKPHPFrawleaelgrrfdyvcVDSPEELRRhpraitRAGQVKGNGTRHEK-------------DDR 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 504 KRVDS-------ATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMlaeADRLKVEKAKFEAEWEHIDVkrEELRKEA 576
Cdd:COG4913 596 RRIRSryvlgfdNRAKLAALEAELAELEEELAEAEERLEALEAELDAL---QERREALQRLAEYSWDEIDV--ASAEREI 670
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 577 EYITRQREAFS------MYLKDERDNIKEERDALRNQhkndVESLNREREEfmnkMVEEHSEWLSKIQRERADFLLGIEM 650
Cdd:COG4913 671 AELEAELERLDassddlAALEEQLEELEAELEELEEE----LDELKGEIGR----LEKELEQAEEELDELQDRLEAAEDL 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 651 QKRELEYCIENKREEL--ENSSRDREKAFEQEKKLEEERIQSLKEMAEK---------------------ELEHVQVELK 707
Cdd:COG4913 743 ARLELRALLEERFAAAlgDAVERELRENLEERIDALRARLNRAEEELERamrafnrewpaetadldadleSLPEYLALLD 822
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 257640938 708 RLDAERLEikldreRREREWAELKDSVEElkvqrEKLETQRHMLRAERDEIRHEIEEL 765
Cdd:COG4913 823 RLEEDGLP------EYEERFKELLNENSI-----EFVADLLSKLRRAIREIKERIDPL 869
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
84-589 |
3.23e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 3.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 84 LLEKNELSSQYEEIKASVDESDlTHMREKSAYVSALAEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAEtkvsags 163
Cdd:PRK03918 206 LREINEISSELPELREELEKLE-KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE------- 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 164 tmseahvmIEDALKKLADAEAKMRAAEALQAEANRYhriaERKLKEVESREDDLTRRLASFK------SECETKENEMVI 237
Cdd:PRK03918 278 --------LEEKVKELKELKEKAEEYIKLSEFYEEY----LDELREIEKRLSRLEEEINGIEerikelEEKEERLEELKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 238 ERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARS----QELAELEKGLDTAKTTFEEERKAFEDKKSNLE------- 306
Cdd:PRK03918 346 KLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTgltpEKLEKELEELEKAKEEIEEEISKITARIGELKkeikelk 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 307 IALALCAKREEVC------FYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELlvaeEKIASKESELIQN-VL 379
Cdd:PRK03918 426 KAIEELKKAKGKCpvcgreLTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL----EKVLKKESELIKLkEL 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 380 ANQEVILRKRKSDVEAElECKSKSVEVEiESKRRAWELR------EVDIKQREDLVGEK---EHDLEVQSRALAEKEKDI 450
Cdd:PRK03918 502 AEQLKELEEKLKKYNLE-ELEKKAEEYE-KLKEKLIKLKgeikslKKELEKLEELKKKLaelEKKLDELEEELAELLKEL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 451 TEKSF-NLDEKEKNLVATEEDINRKTTM------LEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSE- 522
Cdd:PRK03918 580 EELGFeSVEELEERLKELEPFYNEYLELkdaekeLEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEe 659
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 257640938 523 ----LSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREE---LRKEAEYITRQREAFSMY 589
Cdd:PRK03918 660 eyeeLREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKElekLEKALERVEELREKVKKY 733
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
205-769 |
1.16e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 205 RKLKEVESREDDLTRRLASFKSECETKE---NEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELE 281
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLreiNEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 282 KGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEvcfyshnsllflvlhYRSSKKFLGD-KIAVSERESSLLKKEQEL 360
Cdd:PRK03918 259 EKIRELEERIEELKKEIEELEEKVKELKELKEKAEE---------------YIKLSEFYEEyLDELREIEKRLSRLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 361 LVAEEKIA---SKESELIQnvlanqeviLRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLE 437
Cdd:PRK03918 324 NGIEERIKeleEKEERLEE---------LKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELE 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 438 VQSRA---LAEKEKDITEKSFNLDEKEKNLVATEEDIN---------RKTTMLEDEKERLRKLDLELQQS---LTSLEDK 502
Cdd:PRK03918 395 ELEKAkeeIEEEISKITARIGELKKEIKELKKAIEELKkakgkcpvcGRELTEEHRKELLEEYTAELKRIekeLKEIEEK 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 503 RKRVDSATQKLEALKSETSELSTLE------MKLKEELDDLRAQKLEMLA-EADRLKVEKAKFEAEwehIDVKREELRKE 575
Cdd:PRK03918 475 ERKLRKELRELEKVLKKESELIKLKelaeqlKELEEKLKKYNLEELEKKAeEYEKLKEKLIKLKGE---IKSLKKELEKL 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 576 AEYITRQREafsmyLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSkiqreradfLLGIEMQKREL 655
Cdd:PRK03918 552 EELKKKLAE-----LEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLE---------LKDAEKELERE 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 656 EYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAErleikldrerrereWAELKDSVE 735
Cdd:PRK03918 618 EKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRE--------------LAGLRAELE 683
|
570 580 590
....*....|....*....|....*....|....
gi 257640938 736 ELKVQREKLETQRHMLRAERDEIRHEIEELKKLE 769
Cdd:PRK03918 684 ELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
204-636 |
4.14e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 204 ERKLKEVESRE---DDLTRRLASFKSECETKENEMviERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAEL 280
Cdd:TIGR04523 270 SEKQKELEQNNkkiKELEKQLNQLKSEISDLNNQK--EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 281 EKGLDTAKTTFEEERKAFEDKKSNLE-IALALCAKREEV--CFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKE 357
Cdd:TIGR04523 348 KKELTNSESENSEKQRELEEKQNEIEkLKKENQSYKQEIknLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 358 QELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEaELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEkehdLE 437
Cdd:TIGR04523 428 IERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRE-SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKK----LN 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 438 VQSRALAEKEKDITEKSFNLDEKEKNLvatEEDINRKTTMLEDEKERLRKLDLELQQSLTsledkRKRVDSATQKLEALK 517
Cdd:TIGR04523 503 EEKKELEEKVKDLTKKISSLKEKIEKL---ESEKKEKESKISDLEDELNKDDFELKKENL-----EKEIDEKNKEIEELK 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 518 SETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREafsmYLKDERDNI 597
Cdd:TIGR04523 575 QTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKN----KLKQEVKQI 650
|
410 420 430
....*....|....*....|....*....|....*....
gi 257640938 598 KEERDALRNQhKNDVESLNREREEFMNKMVEEHSEWLSK 636
Cdd:TIGR04523 651 KETIKEIRNK-WPEIIKKIKESKTKIDDIIELMKDWLKE 688
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
117-545 |
4.21e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 4.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 117 SALAEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAETKVSAgSTMSEAHVMIEDALKKLADAEAKMR-AAEALQAE 195
Cdd:PRK02224 265 ETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADA-EAVEARREELEDRDEELRDRLEECRvAAQAHNEE 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 196 ANRYHRIAerklKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQ 275
Cdd:PRK02224 344 AESLREDA----DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELRE 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 276 ELAELEKGLDTAKTTFEEERKAFEDKKSNLE---------------IALALCAKREEVcfyshNSLLFLVLHYRSSKKFL 340
Cdd:PRK02224 420 ERDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvegspHVETIEEDRERV-----EELEAELEDLEEEVEEV 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 341 GDKI----AVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEviLRKRKSDVEAELECKSKSV-EVEIESKRRAW 415
Cdd:PRK02224 495 EERLeraeDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEE--LRERAAELEAEAEEKREAAaEAEEEAEEARE 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 416 ELREVDIKQRE---------------DLVGEKEHDLEvqsrALAEKEKDITEK--------------------SFN---- 456
Cdd:PRK02224 573 EVAELNSKLAElkerieslerirtllAAIADAEDEIE----RLREKREALAELnderrerlaekrerkreleaEFDeari 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 457 --LDEKEKNLVATEEDINRKTTMLEDEKERLRK----LDLELQQsLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKL 530
Cdd:PRK02224 649 eeAREDKERAEEYLEQVEEKLDELREERDDLQAeigaVENELEE-LEELRERREALENRVEALEALYDEAEELESMYGDL 727
|
490
....*....|....*
gi 257640938 531 KEElddLRAQKLEML 545
Cdd:PRK02224 728 RAE---LRQRNVETL 739
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
394-562 |
5.52e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.16 E-value: 5.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 394 EAELECKSKSVEVEIESKRRAWELREvdikqredlvgekehdlevqsralaEKEKDITEKSFNLDEKEKNLVATEEDINR 473
Cdd:PRK12704 46 EAKKEAEAIKKEALLEAKEEIHKLRN-------------------------EFEKELRERRNELQKLEKRLLQKEENLDR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 474 KTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMK---LKEELDDLRAQKLEMLAEADR 550
Cdd:PRK12704 101 KLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKeilLEKVEEEARHEAAVLIKEIEE 180
|
170
....*....|..
gi 257640938 551 LKVEKAKFEAEW 562
Cdd:PRK12704 181 EAKEEADKKAKE 192
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
55-281 |
6.83e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 6.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 55 KNRDKAALIAYIAKLESEVYDYQHNMGLLLLEKNELSSQYEEIKASVDESDlthmreksayvSALAEAKKREESLKKDVG 134
Cdd:TIGR02168 724 LSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE-----------EELAEAEAEIEELEAQIE 792
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 135 IAKECISSLEKTLHEMRAECAETKVSAGST----------MSEAHVMIEDALKKLADAEAKMRAAEALQAEANRYHRIAE 204
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANLrerleslerrIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 205 RKLKEVESREDDLTRRLASFKSECETKE---NEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELE 281
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSELEELSeelRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
350-777 |
1.43e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.27 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 350 ESSLLKKEQELLVAEEKIASKESELIQNVLANqeviLRKRKSDVEAELEcksksvevEIESKRRAWELREVDIKQREDLV 429
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEKEEKDLHERLNG----LESELAELDEEIE--------RYEEQREQARETRDEADEVLEEH 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 430 GEKEHDLEVQSRALAEKEKDITEksfnlDEKEKnlvateedinrkttmlEDEKERLRKLDLELQQSLTSLEDKRKRVDSA 509
Cdd:PRK02224 247 EERREELETLEAEIEDLRETIAE-----TERER----------------EELAEEVRDLRERLEELEEERDDLLAEAGLD 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 510 TQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMY 589
Cdd:PRK02224 306 DADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREE 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 590 LKDERDNIKEERDALRN--QHKNDVESLNREREEFMNKMVEEHSEWLSKIQ-----RERADFLL--------GIEMQKRE 654
Cdd:PRK02224 386 IEELEEEIEELRERFGDapVDLGNAEDFLEELREERDELREREAELEATLRtarerVEEAEALLeagkcpecGQPVEGSP 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 655 LEYCIENKREELENSSRDREKAFEQEKKLEE--ERIQSLKEMA---EKELEHVQVELKRLDAERLEIKLDRERREREWAE 729
Cdd:PRK02224 466 HVETIEEDRERVEELEAELEDLEEEVEEVEErlERAEDLVEAEdriERLEERREDLEELIAERRETIEEKRERAEELRER 545
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 257640938 730 LKDSVEELKVQREKLETQRH----------MLRAERDEIRHEIEELKKLENLKVALDD 777
Cdd:PRK02224 546 AAELEAEAEEKREAAAEAEEeaeeareevaELNSKLAELKERIESLERIRTLLAAIAD 603
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
40-830 |
2.48e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 2.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 40 MWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVYDYQHNMGLLLLEKNELSSQYEEIKASVDE---SDLTHMREKSAYV 116
Cdd:pfam02463 150 MKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYqlkEKLELEEEYLLYL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 117 SALAEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEA 196
Cdd:pfam02463 230 DYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 197 NRYHRIAERKLKEVESREDDLTRRLASF-------KSECETKENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDH 269
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKKEKEEIeelekelKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 270 IFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSER 349
Cdd:pfam02463 390 AKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 350 ESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLV 429
Cdd:pfam02463 470 SEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAV 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 430 GEKEHDLEVQSRALAEKEKDITEksfnldekeknlvaTEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSA 509
Cdd:pfam02463 550 IVEVSATADEVEERQKLVRALTE--------------LPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 510 TQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMY 589
Cdd:pfam02463 616 DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEIL 695
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 590 LKDERDNIKEERDALRnqhkndVESLNREREEFMNKMVEEHSEWLSKIQRERadfllgiEMQKRELEYCIENKREELENS 669
Cdd:pfam02463 696 RRQLEIKKKEQREKEE------LKKLKLEAEELLADRVQEAQDKINEELKLL-------KQKIDEEEEEEEKSRLKKEEK 762
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 670 SRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRH 749
Cdd:pfam02463 763 EEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALEL 842
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 750 MLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSALKQKVVSRDDELDLQNGVSTVSNSEDGYNSSM 829
Cdd:pfam02463 843 KEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEER 922
|
.
gi 257640938 830 E 830
Cdd:pfam02463 923 I 923
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
82-773 |
4.95e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 4.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 82 LLLLEKNELSSQYEEIKAsVDESDLTHMREksayvsALAEAKKREESLKKDVGIAKECiSSLEKTLHEMRAECAETKVSa 161
Cdd:TIGR00618 205 LLTLCTPCMPDTYHERKQ-VLEKELKHLRE------ALQQTQQSHAYLTQKREAQEEQ-LKKQQLLKQLRARIEELRAQ- 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 162 gstmseahvmiEDALKKLADAEAKMRAAEALQAEANRYHRI---AERKLKEVESREDDLTRRLAsfksecetKENEMVIE 238
Cdd:TIGR00618 276 -----------EAVLEETQERINRARKAAPLAAHIKAVTQIeqqAQRIHTELQSKMRSRAKLLM--------KRAAHVKQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 239 RQTLNERRKSLQQ---EHERLLDAQVSLNQREDHiFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKR 315
Cdd:TIGR00618 337 QSSIEEQRRLLQTlhsQEIHIRDAHEVATSIREI-SCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 316 EEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVaeeKIASKESELIQNvLANQEVILRK--RKSDV 393
Cdd:TIGR00618 416 TSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQ---ESAQSLKEREQQ-LQTKEQIHLQetRKKAV 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 394 EA-------ELECKSKSVEVEIESKRRAWELREVDikQREDLVGEKEHDLEVQSRALAEKEKD-ITEKSFNLDEKEKNLV 465
Cdd:TIGR00618 492 VLarllelqEEPCPLCGSCIHPNPARQDIDNPGPL--TRRMQRGEQTYAQLETSEEDVYHQLTsERKQRASLKEQMQEIQ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 466 ATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSEtsELSTLEMKLKEELDDLRAQKLEML 545
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP--EQDLQDVRLHLQQCSQELALKLTA 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 546 AEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNdVESLNREREEF--- 622
Cdd:TIGR00618 648 LHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETH-IEEYDREFNEIena 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 623 -------MNKMVEEHSEWLSKIQRERADFLlgiemQKRELEYCIENKREELENSSRDREKAFEQE----KKLEEERIQSL 691
Cdd:TIGR00618 727 ssslgsdLAAREDALNQSLKELMHQARTVL-----KARTEAHFNNNEEVTAALQTGAELSHLAAEiqffNRLREEDTHLL 801
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 692 KEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENL 771
Cdd:TIGR00618 802 KTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKLNGI 881
|
..
gi 257640938 772 KV 773
Cdd:TIGR00618 882 NQ 883
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
569-810 |
5.13e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 5.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 569 REELRKEAEYITRQREAFSMY--LKDERDNIK--------EERDALRNQHKNDVESLNREREEFMNKMVEEHSEW----- 633
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERYkeLKAELRELElallvlrlEELREELEELQEELKEAEEELEELTAELQELEEKLeelrl 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 634 ----LSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQslkemAEKELEHVQVELKRL 709
Cdd:TIGR02168 275 evseLEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE-----LAEELAELEEKLEEL 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 710 DAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELK-KLENLKVALDdmsmaKMQLSNL 788
Cdd:TIGR02168 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEaRLERLEDRRE-----RLQQEIE 424
|
250 260
....*....|....*....|..
gi 257640938 789 ERSWEKVSALKQKVVSRDDELD 810
Cdd:TIGR02168 425 ELLKKLEEAELKELQAELEELE 446
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
617-810 |
1.44e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 617 REREEFMNKMVEEHSEWLSKIQRERADFL--LGIEMQKRELEYCI-----ENKREELENSSRDREKAFEQEKKLEEERIQ 689
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRREREKAEryQALLKEKREYEGYEllkekEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 690 SLKEMAEKE--LEHVQVELKRLDAER--------LEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIR 759
Cdd:TIGR02169 263 LEKRLEEIEqlLEELNKKIKDLGEEEqlrvkekiGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 257640938 760 HEIEELKK-LENLKVALDDMSMAKMQL-SNLERSWEKVSALKQKVVSRDDELD 810
Cdd:TIGR02169 343 REIEEERKrRDKLTEEYAELKEELEDLrAELEEVDKEFAETRDELKDYREKLE 395
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
566-777 |
1.70e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 1.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 566 DVKREELRKEAEYITRQREAFSmYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKI-------- 637
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALD-KLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEIseleneik 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 638 ----QRERADFL--LGIEMQK-RELEYCI----ENKREELENSSRDREKAFEQEKKLEEER----IQSLKEMAEKELEhv 702
Cdd:PRK05771 118 eleqEIERLEPWgnFDLDLSLlLGFKYVSvfvgTVPEDKLEELKLESDVENVEYISTDKGYvyvvVVVLKELSDEVEE-- 195
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257640938 703 qvELKRLDAERLEIKldrerrerewaELKDSVEELKVQREKLETqrhmLRAERDEIRHEIEEL-KKLENLKVALDD 777
Cdd:PRK05771 196 --ELKKLGFERLELE-----------EEGTPSELIREIKEELEE----IEKERESLLEELKELaKKYLEELLALYE 254
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
481-774 |
1.71e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 481 EKERLRKldlELQQSLTSLEDKRKRVDSATQKLEALKSETS---ELSTLEMKLKEELDdlRAQKLEMLAEADRLKVEKAK 557
Cdd:pfam17380 297 EQERLRQ---EKEEKAREVERRRKLEEAEKARQAEMDRQAAiyaEQERMAMERERELE--RIRQEERKRELERIRQEEIA 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 558 FEA----EWEHIDVKR----EELRKEAEYITRQR---EAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKM 626
Cdd:pfam17380 372 MEIsrmrELERLQMERqqknERVRQELEAARKVKileEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERV 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 627 VEEHSEWLSKIQRERADfllgiEMQKRELEYCIENKREELENSSRDREKAFEQEKK------LEEERIQSL--KEMAEKE 698
Cdd:pfam17380 452 RLEEQERQQQVERLRQQ-----EEERKRKKLELEKEKRDRKRAEEQRRKILEKELEerkqamIEEERKRKLleKEMEERQ 526
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257640938 699 LEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEElkvqREKLETqrhmLRAERDEIRHEIEELKKLENLKVA 774
Cdd:pfam17380 527 KAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEE----RSRLEA----MEREREMMRQIVESEKARAEYEAT 594
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
350-715 |
1.93e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 350 ESSLLKKEQELLVAEEKIASKESELIQNVLANQEV-ILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQR-ED 427
Cdd:pfam17380 241 ESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNQLLhIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKlEE 320
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 428 LVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATE-EDINRKTTMLEDEKER-LRKLDLELQQsltsledKRKR 505
Cdd:pfam17380 321 AEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRElERIRQEEIAMEISRMReLERLQMERQQ-------KNER 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 506 VDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKlemlAEADRLKVEKAKFEAEWEHIDVKREEL-RKEAEYITRQRE 584
Cdd:pfam17380 394 VRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQ----EEARQREVRRLEEERAREMERVRLEEQeRQQQVERLRQQE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 585 AFSMYLKDERDNIKEERDALRNQHKNDVEslnREREEFMNKMVEEhsewlskiqreradfllgiemqkreleyciENKRE 664
Cdd:pfam17380 470 EERKRKKLELEKEKRDRKRAEEQRRKILE---KELEERKQAMIEE------------------------------ERKRK 516
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 257640938 665 ELENSSRDREKAF--EQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLE 715
Cdd:pfam17380 517 LLEKEMEERQKAIyeEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLE 569
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
348-494 |
2.52e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 45.07 E-value: 2.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 348 ERESSLLKKEQELLVAEEKIASKEseliqnvlanqevilrkRKSDVEAELEckskSVEVEIESKRRAWELRevdiKQRED 427
Cdd:COG0542 417 ERRLEQLEIEKEALKKEQDEASFE-----------------RLAELRDELA----ELEEELEALKARWEAE----KELIE 471
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257640938 428 LVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVA--TEEDI----NRKT-----TMLEDEKERLRKLDLELQQ 494
Cdd:COG0542 472 EIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREevTEEDIaevvSRWTgipvgKLLEGEREKLLNLEEELHE 549
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
225-769 |
3.62e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.51 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 225 KSECETKENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSN 304
Cdd:PRK01156 189 EEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLSME 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 305 LEIALALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESEliqnvlANQEV 384
Cdd:PRK01156 269 LEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKD------YNDYI 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 385 ILRKRKSDVEAEL------ECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAE-------KEKDIT 451
Cdd:PRK01156 343 KKKSRYDDLNNQIlelegyEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKelneinvKLQDIS 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 452 EKSFNLDEKEKNLVATEEDINRKTTMLEDE-KERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKL 530
Cdd:PRK01156 423 SKVSSLNQRIRALRENLDELSRNMEMLNGQsVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDL 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 531 KEELDDLRAQKLEMLAEADRLKVEKakfEAEWEHIDVKREELR-KEAEYITRQREAFSMYLKDERDNIKEERDALRNQHK 609
Cdd:PRK01156 503 KKRKEYLESEEINKSINEYNKIESA---RADLEDIKIKINELKdKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISL 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 610 NDVESlNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELE---YCIENKREELENSSRDREKAFEQEKKLEEE 686
Cdd:PRK01156 580 IDIET-NRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIEneaNNLNNKYNEIQENKILIEKLRGKIDNYKKQ 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 687 riqslkemaEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELK 766
Cdd:PRK01156 659 ---------IAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMK 729
|
...
gi 257640938 767 KLE 769
Cdd:PRK01156 730 KIK 732
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
477-793 |
3.72e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 477 MLEdEKERLRKLDlELQQSLTSLEDKRKRVDSATQKLEALksetSELSTLEMKLKEELDDLRAQKlemlAEADRLKVEKA 556
Cdd:COG4913 217 MLE-EPDTFEAAD-ALVEHFDDLERAHEALEDAREQIELL----EPIRELAERYAAARERLAELE----YLRAALRLWFA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 557 kfEAEWEHIDVKREELRKEAEYITRQREAfsmyLKDERDNIKEERDALRNQHKN----DVESLNREreefmnkmveehse 632
Cdd:COG4913 287 --QRRLELLEAELEELRAELARLEAELER----LEARLDALREELDELEAQIRGnggdRLEQLERE-------------- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 633 wlskiqreradfllgiemqkreleycIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEkELEHVQVELKRLDAE 712
Cdd:COG4913 347 --------------------------IERLERELEERERRRARLEALLAALGLPLPASAEEFAA-LRAEAAALLEALEEE 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 713 RLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEelkklENLKVALDDMSMAK--MQLSNLER 790
Cdd:COG4913 400 LEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALA-----EALGLDEAELPFVGelIEVRPEEE 474
|
...
gi 257640938 791 SWE 793
Cdd:COG4913 475 RWR 477
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
206-809 |
4.60e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 4.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 206 KLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKgld 285
Cdd:TIGR04523 90 KLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKK--- 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 286 tAKTTFEEERKAFEDKKSNLEIALALCAKREevcfYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKK----EQELL 361
Cdd:TIGR04523 167 -QKEELENELNLLEKEKLNIQKNIDKIKNKL----LKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDniekKQQEI 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 362 VAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEvqsr 441
Cdd:TIGR04523 242 NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELK---- 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 442 alaEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETS 521
Cdd:TIGR04523 318 ---NQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 522 ELSTlEMKLKEELDDLRAQKLEmlaeadRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFsmylkderDNIKEER 601
Cdd:TIGR04523 395 DLES-KIQNQEKLNQQKDEQIK------KLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVK--------ELIIKNL 459
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 602 DALRNQHKNDVESLNREReefmnKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELEnSSRDREKAFEQEK 681
Cdd:TIGR04523 460 DNTRESLETQLKVLSRSI-----NKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKIS-SLKEKIEKLESEK 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 682 KLEEERIQSLkemaEKELEHVQVELKRldaERLEIKLDRERREREwaELKDSVEELKVQREKLETQRHMLRAERDEIRHE 761
Cdd:TIGR04523 534 KEKESKISDL----EDELNKDDFELKK---ENLEKEIDEKNKEIE--ELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKE 604
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 257640938 762 IEELKKLenlkvalddMSMAKMQLSNLERSWEKVSALKQKVVSRDDEL 809
Cdd:TIGR04523 605 IEEKEKK---------ISSLEKELEKAKKENEKLSSIIKNIKSKKNKL 643
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
680-903 |
5.90e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 680 EKKLEEERIQSLKEMAEKELEHVqVELKR-LDAERLEIKLDRERREREWAELKDSVEE--LKVQRE--KLETQRHMLRAE 754
Cdd:PRK05771 37 KEELSNERLRKLRSLLTKLSEAL-DKLRSyLPKLNPLREEKKKVSVKSLEELIKDVEEelEKIEKEikELEEEISELENE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 755 RDEIRHEIEELKKLENLKVALDDmsmakmqLSNLERSWEKVSALKQKVVSRDDELDLQNGVSTVSNSEDGYNSSMerqNG 834
Cdd:PRK05771 116 IKELEQEIERLEPWGNFDLDLSL-------LLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVV---VV 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 835 LTPSSATPFSWIKRCTNLIFKTSPEK--STLMHHYEEE-GGVPSEKLKLESS--------RREEKAYTEGLSIAVERLEA 903
Cdd:PRK05771 186 LKELSDEVEEELKKLGFERLELEEEGtpSELIREIKEElEEIEKERESLLEElkelakkyLEELLALYEYLEIELERAEA 265
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
473-688 |
7.71e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 7.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 473 RKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTlemklkeelddlRAQKLEMLAEADRLK 552
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELRE------------ELEKLEKLLQLLPLY 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 553 VEKAKFEAEWEHIDVKREELRKEAEYITRQREafsmylkdERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSE 632
Cdd:COG4717 132 QELEALEAELAELPERLEELEERLEELRELEE--------ELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEE 203
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 257640938 633 WLSKIQRERADFllgiemqkRELEYCIENKREELENSSRDREKAFEQEKKLEEERI 688
Cdd:COG4717 204 LQQRLAELEEEL--------EEAQEELEELEEELEQLENELEAAALEERLKEARLL 251
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
116-807 |
8.73e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 8.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 116 VSALAEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAETKvsagSTMSEAHVMIEDALKKLADA--EAKMRAAEALQ 193
Cdd:pfam12128 243 FTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETS----AELNQLLRTLDDQWKEKRDElnGELSAADAAVA 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 194 AEANRYHRIAERKLK----EVESREDDLTRrLASFKSECETKENEMvierQTLNERRKSLQQEHERLLDAQVSLNQREdh 269
Cdd:pfam12128 319 KDRSELEALEDQHGAfldaDIETAAADQEQ-LPSWQSELENLEERL----KALTGKHQDVTAKYNRRRSKIKEQNNRD-- 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 270 ifarsqeLAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAKREEVCFYSHNSLLFLVLHyrSSKKFLGDKIAVSER 349
Cdd:pfam12128 392 -------IAGIKDKLAKIREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLG--ELKLRLNQATATPEL 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 350 ESSLLKKEQELLVAEEKIASKESEliQNVLANQEVILRKRKSDVEAELECKSKSVEveiESKRRAWELREVDIKQ----- 424
Cdd:pfam12128 463 LLQLENFDERIERAREEQEAANAE--VERLQSELRQARKRRDQASEALRQASRRLE---ERQSALDELELQLFPQagtll 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 425 ---REDLVGEKEHDLEVQSRAL------------AEKEKDITEKSFNLDEKE---KNLVATEEDINRK----TTMLEDEK 482
Cdd:pfam12128 538 hflRKEAPDWEQSIGKVISPELlhrtdldpevwdGSVGGELNLYGVKLDLKRidvPEWAASEEELRERldkaEEALQSAR 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 483 ERLRKLDLELQQSLTSLEDKRKRVDSATQKL----EALKSETSELSTLEMKLKEELDDLRAQKLEMLAEAD-RLKVEKAK 557
Cdd:pfam12128 618 EKQAAAEEQLVQANGELEKASREETFARTALknarLDLRRLFDEKQSEKDKKNKALAERKDSANERLNSLEaQLKQLDKK 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 558 FEAEWEHIDVKREELRKEAEYITRQREAfsmYLKDERDNIKEERDALRNQHKNDVESLNRERE-EFMNKMVEEhsEWLSK 636
Cdd:pfam12128 698 HQAWLEEQKEQKREARTEKQAYWQVVEG---ALDAQLALLKAAIAARRSGAKAELKALETWYKrDLASLGVDP--DVIAK 772
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 637 IQRERADFllgiemqKRELEYCIENKREELenssrdREKAFEQEK-KLEEERIQSLKEMAEKELEHVQVELKRLDAErle 715
Cdd:pfam12128 773 LKREIRTL-------ERKIERIAVRRQEVL------RYFDWYQETwLQRRPRLATQLSNIERAISELQQQLARLIAD--- 836
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 716 ikldrerrerewaelkdsveeLKVQREKLETQRHMLRAERDEIRHEIEELK----KLENLKVALDDMSMAKM------QL 785
Cdd:pfam12128 837 ---------------------TKLRRAKLEMERKASEKQQVRLSENLRGLRcemsKLATLKEDANSEQAQGSigerlaQL 895
|
730 740
....*....|....*....|..
gi 257640938 786 SNLERSWEKVSALKQKVVSRDD 807
Cdd:pfam12128 896 EDLKLKRDYLSESVKKYVEHFK 917
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
211-804 |
9.64e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 9.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 211 ESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLdtakTT 290
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDL----SK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 291 FEEERKAFEDKKSNLEIALAlcakreevcfyshnsllflvlhyRSSKKFLGDKIAVSERESSLLKKEQELlvaeEKIASK 370
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELN-----------------------KLEKQKKENKKNIDKFLTEIKKKEKEL----EKLNNK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 371 ESELIQNV--LANQEVILRKRKSDVEAELEcksksvevEIESKRRAWELREVDIKQREdlvgEKEHDLEVQSRALAEKEK 448
Cdd:TIGR04523 161 YNDLKKQKeeLENELNLLEKEKLNIQKNID--------KIKNKLLKLELLLSNLKKKI----QKNKSLESQISELKKQNN 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 449 DITeksfnldekeKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSElstlem 528
Cdd:TIGR04523 229 QLK----------DNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQ------ 292
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 529 kLKEELDDLRAQKlemlaEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRqreafsmyLKDERDNIKEERDALRnqh 608
Cdd:TIGR04523 293 -LKSEISDLNNQK-----EQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQ--------LNEQISQLKKELTNSE--- 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 609 kNDVESLNREREEFMNKmveehsewLSKIQRERADFLLGIemqkreleycienkrEELENSSRDREKAFEQEKKLEEERI 688
Cdd:TIGR04523 356 -SENSEKQRELEEKQNE--------IEKLKKENQSYKQEI---------------KNLESQINDLESKIQNQEKLNQQKD 411
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 689 QSLKEmAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKl 768
Cdd:TIGR04523 412 EQIKK-LQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK- 489
|
570 580 590
....*....|....*....|....*....|....*.
gi 257640938 769 eNLKVALDDMSMAKMQLSNLErswEKVSALKQKVVS 804
Cdd:TIGR04523 490 -ELKSKEKELKKLNEEKKELE---EKVKDLTKKISS 521
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
443-605 |
1.05e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 443 LAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETsE 522
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK-E 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 523 LSTLEM---KLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQreafsmyLKDERDNIKE 599
Cdd:COG1579 91 YEALQKeieSLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAE-------LEAELEELEA 163
|
....*.
gi 257640938 600 ERDALR 605
Cdd:COG1579 164 EREELA 169
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
497-700 |
1.13e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.51 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 497 TSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEwehIDVKREELRKEA 576
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE---IEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 577 EYITRQREAFSMY-----------LKDERDNIkeerDALRNQHKNDVESLNREREEFMNKMVEehsewLSKIQRERADFL 645
Cdd:COG3883 93 RALYRSGGSVSYLdvllgsesfsdFLDRLSAL----SKIADADADLLEELKADKAELEAKKAE-----LEAKLAELEALK 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 257640938 646 LGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELE 700
Cdd:COG3883 164 AELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| PRK00106 |
PRK00106 |
ribonuclease Y; |
343-470 |
1.19e-03 |
|
ribonuclease Y;
Pssm-ID: 178867 [Multi-domain] Cd Length: 535 Bit Score: 42.55 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 343 KIAVSERESSLLKKEQELLVAEEKiASKESELIQNVlANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVD- 421
Cdd:PRK00106 27 KSAKEAAELTLLNAEQEAVNLRGK-AERDAEHIKKT-AKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIEs 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 257640938 422 -IKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEED 470
Cdd:PRK00106 105 rLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQ 154
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
201-309 |
1.27e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 201 RIAERKLKEVESREDDL----TRRLASFKSECETKENEMVIERQT-----LNERRKSLQQEHERLLDAQVSLNQREDHIF 271
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRIleeaKKEAEAIKKEALLEAKEEIHKLRNefekeLRERRNELQKLEKRLLQKEENLDRKLELLE 106
|
90 100 110
....*....|....*....|....*....|....*...
gi 257640938 272 ARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIAL 309
Cdd:PRK12704 107 KREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
353-779 |
1.30e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 353 LLKKEQELLVAEEKIASKESELiqNVLANQEVILRKRKSDVEAELEcksksvevEIESKRRAWELREVDIKQREdlVGEK 432
Cdd:COG4913 283 LWFAQRRLELLEAELEELRAEL--ARLEAELERLEARLDALREELD--------ELEAQIRGNGGDRLEQLERE--IERL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 433 EHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRkttMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQK 512
Cdd:COG4913 351 ERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAA---LLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 513 LEALKSETSELStlemklkEELDDLRAQklemLAEADRLKVEKAKFEAEweHIDVKREELRkeaeyitrQREAFSMYLKD 592
Cdd:COG4913 428 IASLERRKSNIP-------ARLLALRDA----LAEALGLDEAELPFVGE--LIEVRPEEER--------WRGAIERVLGG 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 593 ERDNI----KEERDALR--NQHKN----DVESLNREREEFMNKMVEEHS-------------EWLSKI------------ 637
Cdd:COG4913 487 FALTLlvppEHYAAALRwvNRLHLrgrlVYERVRTGLPDPERPRLDPDSlagkldfkphpfrAWLEAElgrrfdyvcvds 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 638 -----------------------------QRERADFLLGIEMQKReleycIENKREELENSSRDREKAFEQEKKLEEER- 687
Cdd:COG4913 567 peelrrhpraitragqvkgngtrhekddrRRIRSRYVLGFDNRAK-----LAALEAELAELEEELAEAEERLEALEAELd 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 688 --------IQSLKEM---------AEKELEHVQVELKRLDAERLEIkldrerrerewAELKDSVEELKVQREKLETQRHM 750
Cdd:COG4913 642 alqerreaLQRLAEYswdeidvasAEREIAELEAELERLDASSDDL-----------AALEEQLEELEAELEELEEELDE 710
|
490 500 510
....*....|....*....|....*....|
gi 257640938 751 LRAERDEIRHEIEELK-KLENLKVALDDMS 779
Cdd:COG4913 711 LKGEIGRLEKELEQAEeELDELQDRLEAAE 740
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
173-601 |
1.39e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 173 EDALKKLADAEAKMRAAEALQAEanryHRIAERKLKEVESREDDLTRRLASFKSECETKEN-----EMVIERQTLNERRK 247
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEE----YAELQEELEELEEELEELEAELEELREELEKLEKllqllPLYQELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 248 SLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTF-EEERKAFEDKKSNLEIALALCAKREEvcfyshnsl 326
Cdd:COG4717 143 ELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQRLAELEE--------- 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 327 lfLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEK---------IASKESELIQNVLANQEVIL----------- 386
Cdd:COG4717 214 --ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLlliaaallaLLGLGGSLLSLILTIAGVLFlvlgllallfl 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 387 ---RKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKN 463
Cdd:COG4717 292 llaREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 464 L--------VATEEDINRKTTMLEDEKERLRKLDlELQQSLTSLEDKRkRVDSATQKLEALKSETSELSTLEMKLKEELD 535
Cdd:COG4717 372 IaallaeagVEDEEELRAALEQAEEYQELKEELE-ELEEQLEELLGEL-EELLEALDEEELEEELEELEEELEELEEELE 449
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 257640938 536 DLRAQKLEMLAEADRLKVEKAKFEAEwEHIDVKREELRKEAEYITRQREAFSMyLKDERDNIKEER 601
Cdd:COG4717 450 ELREELAELEAELEQLEEDGELAELL-QELEELKAELRELAEEWAALKLALEL-LEEAREEYREER 513
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
459-809 |
2.10e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 42.20 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 459 EKEKNLVATEEDINRKTTMLEDEKERLRKLDL----ELQQSLTSLEDKRKRVDSatQKLEALKSETSELSTlEMKLKEEL 534
Cdd:PLN02939 49 KRGKNIAPKQRSSNSKLQSNTDENGQLENTSLrtvmELPQKSTSSDDDHNRASM--QRDEAIAAIDNEQQT-NSKDGEQL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 535 DDLRAQKL-EML--AEADRLKVEKAKFEAeWEHIDvkreELRKEAEYITRQREAFSMYLKDERDNIKeerdaLRNQHKND 611
Cdd:PLN02939 126 SDFQLEDLvGMIqnAEKNILLLNQARLQA-LEDLE----KILTEKEALQGKINILEMRLSETDARIK-----LAAQEKIH 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 612 VESLNREREEFMNKMVEEHSEWLSKIQRERADFLLgIEMQKRELEYCIENKREELENSSRDREKAFeqekKLEEERiqSL 691
Cdd:PLN02939 196 VEILEEQLEKLRNELLIRGATEGLCVHSLSKELDV-LKEENMLLKDDIQFLKAELIEVAETEERVF----KLEKER--SL 268
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 692 KEMAEKELEHvqvelKRLDAERLEIKLDRERREREWaelkdsveelkvqrEKLETQRHMLRAERDEIRHEIEEL------ 765
Cdd:PLN02939 269 LDASLRELES-----KFIVAQEDVSKLSPLQYDCWW--------------EKVENLQDLLDRATNQVEKAALVLdqnqdl 329
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 257640938 766 -KKLENLKVALDDMSMAKMQLSNLERSWEKVSALKQKVVSRDDEL 809
Cdd:PLN02939 330 rDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEI 374
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
143-579 |
2.11e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 143 LEKTLHEMRAECAETKvSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEANRYHRIaERKLKEVESREDDLTRRLA 222
Cdd:COG4717 93 LQEELEELEEELEELE-AELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEEL-EERLEELRELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 223 SFKSECETKENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKK 302
Cdd:COG4717 171 ELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARL 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 303 SNLEIALALCAKREEVCFYSHNSLLFLVLHYRSSkkFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQ 382
Cdd:COG4717 251 LLLIAAALLALLGLGGSLLSLILTIAGVLFLVLG--LLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAAL 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 383 EVILRKRKSDVEAELEC--KSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLE------VQSRALAEKEKDITEKS 454
Cdd:COG4717 329 GLPPDLSPEELLELLDRieELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEelraalEQAEEYQELKEELEELE 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 455 FNLDEKEKNLVATEEDINrkttmLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETsELStlemKLKEEL 534
Cdd:COG4717 409 EQLEELLGELEELLEALD-----EEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDG-ELA----ELLQEL 478
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 257640938 535 DDLRAQKLEMLAEADRLKVEKAKFE-AEWEHIDVKREELRKEAEYI 579
Cdd:COG4717 479 EELKAELRELAEEWAALKLALELLEeAREEYREERLPPVLERASEY 524
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
172-522 |
2.34e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 2.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 172 IEDALKKLADAEAKMRAAEALQAE-ANRYHRIAERKLKEVesREDDLTRRLASFK-SECETKENEMVIERQTLNERRKSL 249
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEkRQQLERLRREREKAE--RYQALLKEKREYEgYELLKEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 250 QQEHERLldaQVSLNQREDHIFARSQELAELEKGLDTAKttfEEERKAFEDKKSNLEIALALCAKREEVCFYSHNSLLFL 329
Cdd:TIGR02169 250 EEELEKL---TEEISELEKRLEEIEQLLEELNKKIKDLG---EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 330 VLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRkrksdveaELECKSKSVEVEIE 409
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA--------ETRDELKDYREKLE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 410 SKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLd 489
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL- 474
|
330 340 350
....*....|....*....|....*....|...
gi 257640938 490 lelQQSLTSLEDKRKRVDSATQKLEALKSETSE 522
Cdd:TIGR02169 475 ---KEEYDRVEKELSKLQRELAEAEAQARASEE 504
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
90-293 |
2.78e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.54 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 90 LSSQYEEIKASVDESD--LTHMREKSAYVSALAEAK---KREESLKKDVGIAKECISSLEKTLHEMRAECAETKVSAGST 164
Cdd:COG3206 180 LEEQLPELRKELEEAEaaLEEFRQKNGLVDLSEEAKlllQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 165 MSEAhvMIEDALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASfksecetkenEMVIERQTLNE 244
Cdd:COG3206 260 LQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILA----------SLEAELEALQA 327
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 257640938 245 RRKSLQQEHERLLDAQVSLNQREdhifarsQELAELEKGLDTAKTTFEE 293
Cdd:COG3206 328 REASLQAQLAQLEARLAELPELE-------AELRRLEREVEVARELYES 369
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
190-764 |
3.00e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.88 E-value: 3.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 190 EALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDAQVSLNQREDH 269
Cdd:TIGR00618 179 TQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKK 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 270 IFARSQELAELEKgldtakttFEEERKAFEDKKSNLEIAlalcakreevcfyshnsllflvlhyRSSKKFLGDKIAVSER 349
Cdd:TIGR00618 259 QQLLKQLRARIEE--------LRAQEAVLEETQERINRA-------------------------RKAAPLAAHIKAVTQI 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 350 ESSLLKKEQELLVAEEKIAsKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLV 429
Cdd:TIGR00618 306 EQQAQRIHTELQSKMRSRA-KLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 430 GEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSA 509
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 510 TQKLEALKSETSELSTLEMKLKEelddlraQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITR--QREAFS 587
Cdd:TIGR00618 465 AQSLKEREQQLQTKEQIHLQETR-------KKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRmqRGEQTY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 588 MYLKDERDNIKEERDALRNQHKNDVESLNREREEF--MNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREE 665
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFsiLTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHAL 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 666 LEnssRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRlDAERLEIKLDRERREREWAELKDSVEELKVQREKLE 745
Cdd:TIGR00618 618 LR---KLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQ-ERVREHALSIRVLPKELLASRQLALQKMQSEKEQLT 693
|
570
....*....|....*....
gi 257640938 746 TQRHMLrAERDEIRHEIEE 764
Cdd:TIGR00618 694 YWKEML-AQCQTLLRELET 711
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
655-771 |
3.65e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 3.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 655 LEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQV---ELKRLDA--ERLEIKLDRERREREWAE 729
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEEleaELEEKDEriERLERELSEARSEERREI 461
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 257640938 730 LKDS-VEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENL 771
Cdd:COG2433 462 RKDReISRLDREIERLERELEEERERIEELKRKLERLKELWKL 504
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
529-767 |
3.72e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 529 KLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAfsmyLKDERDNIKEERDALRNQH 608
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA----LEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 609 KNDVESL-NREREEFMNKMVEEHSEWLSkiQRERADFLLGIEMQKRELEYcienkreelenssrDREKAFEQEKKLEEer 687
Cdd:COG4942 100 EAQKEELaELLRALYRLGRQPPLALLLS--PEDFLDAVRRLQYLKYLAPA--------------RREQAEELRADLAE-- 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 688 IQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKK 767
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
355-562 |
3.75e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 355 KKEQELLVAEEKIASKESELIQnvlanqeviLRKRKSDVEAELecksKSVEVEIESKRRAWELREVDIKQREDLVGEKEH 434
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAA---------LKKEEKALLKQL----AALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 435 DLEVQSRALAEKEKDITE--------------------KSFN---------------LDEKEKNLVATEEDINRKTTMLE 479
Cdd:COG4942 91 EIAELRAELEAQKEELAEllralyrlgrqpplalllspEDFLdavrrlqylkylapaRREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 480 DEKERLRKLDLELQQSLTSLE----DKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEK 555
Cdd:COG4942 171 AERAELEALLAELEEERAALEalkaERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAA 250
|
....*..
gi 257640938 556 AKFEAEW 562
Cdd:COG4942 251 LKGKLPW 257
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
435-812 |
4.43e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 4.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 435 DLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRkttmLEDEKERLRKLdLELQQSLTSLEDKRKRVDSATQKLE 514
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEE----LREELEKLEKL-LQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 515 ALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKakfEAEWEHIDVKREELRKEAEYITRQREAfsmyLKDER 594
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEELEELLEQLSLAT---EEELQDLAEELEELQQRLAELEEELEE----AQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 595 DNIKEERDALRNQH--KNDVESLNREREEFM-----------NKMVEEHSEWLSKIQRERADFLLgiemqkreLEYCIEN 661
Cdd:COG4717 223 EELEEELEQLENELeaAALEERLKEARLLLLiaaallallglGGSLLSLILTIAGVLFLVLGLLA--------LLFLLLA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 662 KREELENSSRDREKAFEQEKKLEEERIQSLKEmaekelehvqvELKRLDAERLEIKLDRERREREWAELKDSVEELK--V 739
Cdd:COG4717 295 REKASLGKEAEELQALPALEELEEEELEELLA-----------ALGLPPDLSPEELLELLDRIEELQELLREAEELEeeL 363
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 257640938 740 QREKLETQRHMLRAE-----RDEIRHEIEELKKLENLKVALDDmsmAKMQLSNLERSWEKVSALKQKVVSRDDELDLQ 812
Cdd:COG4717 364 QLEELEQEIAALLAEagvedEEELRAALEQAEEYQELKEELEE---LEEQLEELLGELEELLEALDEEELEEELEELE 438
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
664-833 |
4.66e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 664 EELENSSRDREKAFEQEKKLEEERIQslKEMAEKELEHVQVELKRLDAE--RLEIKLDRERREREWAELKDSVEELKVQR 741
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEE--LEELEEELEELEAELEELREEleKLEKLLQLLPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 742 EKLETQRHMLRAERDEIRHEIEELKKLEN-LKVALDDMSMAKmqLSNLERSWEKVSALKQKVVSRDDELD-LQNGVSTVS 819
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEeLEELLEQLSLAT--EEELQDLAEELEELQQRLAELEEELEeAQEELEELE 226
|
170
....*....|....
gi 257640938 820 NSEDGYNSSMERQN 833
Cdd:COG4717 227 EELEQLENELEAAA 240
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
343-452 |
4.89e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 40.63 E-value: 4.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 343 KIAVSERESSLLKKEQELLVAEEKIASKESEL-IQNVLANQEVILRKRKSDVEAELE--CKSKSVEVEIESKRRAwelRE 419
Cdd:COG2268 215 AIAQANREAEEAELEQEREIETARIAEAEAELaKKKAEERREAETARAEAEAAYEIAeaNAEREVQRQLEIAERE---RE 291
|
90 100 110
....*....|....*....|....*....|...
gi 257640938 420 VDIKQREDLVGEKEHDLEVQSRALAEKEKDITE 452
Cdd:COG2268 292 IELQEKEAEREEAELEADVRKPAEAEKQAAEAE 324
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
362-548 |
5.61e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 5.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 362 VAEEKIASKESE---LIQNvlANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWEL--REVDIKQREDLvgekehdL 436
Cdd:PRK12704 28 IAEAKIKEAEEEakrILEE--AKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELqkLEKRLLQKEEN-------L 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 437 EVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLdlelqqsltSLEDKRKRVdsatqkLEAL 516
Cdd:PRK12704 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGL---------TAEEAKEIL------LEKV 163
|
170 180 190
....*....|....*....|....*....|....
gi 257640938 517 KSETSELSTLEMKLKEELDDLRAQKL--EMLAEA 548
Cdd:PRK12704 164 EEEARHEAAVLIKEIEEEAKEEADKKakEILAQA 197
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
457-618 |
7.55e-03 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 39.99 E-value: 7.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 457 LDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDD 536
Cdd:pfam05262 187 REDNEKGVNFRRDMTDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADT 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 537 LRAQKLEMLAEADRLKVEKAKFEAE------WEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKN 610
Cdd:pfam05262 267 SSPKEDKQVAENQKREIEKAQIEIKkndeeaLKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEA 346
|
....*...
gi 257640938 611 DVESLNRE 618
Cdd:pfam05262 347 QPTSLNED 354
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
441-643 |
7.71e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 7.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 441 RALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSET 520
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 257640938 521 SEL----------STLEMKLK-EELDDL--RAQKLEMLAEADRLKVEkaKFEAEWEHIDVKREELRKEAEYITRQREAfs 587
Cdd:COG4942 107 AELlralyrlgrqPPLALLLSpEDFLDAvrRLQYLKYLAPARREQAE--ELRADLAELAALRAELEAERAELEALLAE-- 182
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 257640938 588 myLKDERDNI---KEERDALRNQHKNDVESLNREREEfMNKMVEEHSEWLSKIQRERAD 643
Cdd:COG4942 183 --LEEERAALealKAERQKLLARLEKELAELAAELAE-LQQEAEELEALIARLEAEAAA 238
|
|
| |
