NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|218418692|emb|CAV27940|]
View 

unnamed protein product [Arabidopsis thaliana]

Protein Classification

DC1 domain-containing protein( domain architecture ID 10503954)

DC1 (divergent C1) domain-containing protein similar to Capsicum annuum cysteine/histidine-rich DC1 domain protein CaDC1 that binds both RNA and DNA and is required for plant cell death and defense response

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 682-732 5.50e-11

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 58.54  E-value: 5.50e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 218418692  682 FSHDHHhLKLDeniDRDYNENKLCQACITPI-YFGNFYSCMQCDFILHEECA 732
Cdd:pfam03107   1 PSHPHP-LTLT---GSPRDGSFTCDACGLKIdGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 544-588 7.32e-09

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 52.38  E-value: 7.32e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 218418692  544 KWHEHTLAQF--PRKTSLTCNVCAL-THSSCPFYMCPPCDFVVHQKCI 588
Cdd:pfam03107   1 PSHPHPLTLTgsPRDGSFTCDACGLkIDGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 597-646 6.14e-08

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 49.68  E-value: 6.14e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 218418692  597 SRHFHRIHFTPSFDQEVRCCGVCRRKIDNDYGGYSCNKdgCWYAAHSKCA 646
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSE--CDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 856-906 5.68e-07

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 46.99  E-value: 5.68e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 218418692  856 YKHDkHMLTLSYgeETSTMTYWCEVCEKKINPKERFYMCDEyCCVTLHIEC 906
Cdd:pfam03107   1 PSHP-HPLTLTG--SPRDGSFTCDACGLKIDGFFGFYSCSE-CDFVLHERC 47
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 487-532 3.42e-06

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 44.68  E-value: 3.42e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 218418692  487 LHPkHSLQLVLLNGDTTRECYCCDKDL--EEVFYYCSACDYAMNIACI 532
Cdd:pfam03107   2 SHP-HPLTLTGSPRDGSFTCDACGLKIdgFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 741-792 7.48e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 41.21  E-value: 7.48e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 218418692  741 PVHPHLLTLVGRSDlvmDATKSCSICSWR-CTTGFFYECSEreCRFKVHVQCA 792
Cdd:pfam03107   1 PSHPHPLTLTGSPR---DGSFTCDACGLKiDGFFGFYSCSE--CDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 802-848 6.45e-04

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


:

Pssm-ID: 427141  Cd Length: 48  Bit Score: 38.51  E-value: 6.45e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 218418692  802 SHMDPLFLTSKPGEERRCC-VCKELGHCSTNeTFNCIECDFALCFKCA 848
Cdd:pfam03107   2 SHPHPLTLTGSPRDGSFTCdACGLKIDGFFG-FYSCSECDFVLHERCA 48
 
Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 682-732 5.50e-11

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 58.54  E-value: 5.50e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 218418692  682 FSHDHHhLKLDeniDRDYNENKLCQACITPI-YFGNFYSCMQCDFILHEECA 732
Cdd:pfam03107   1 PSHPHP-LTLT---GSPRDGSFTCDACGLKIdGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 544-588 7.32e-09

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 52.38  E-value: 7.32e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 218418692  544 KWHEHTLAQF--PRKTSLTCNVCAL-THSSCPFYMCPPCDFVVHQKCI 588
Cdd:pfam03107   1 PSHPHPLTLTgsPRDGSFTCDACGLkIDGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 597-646 6.14e-08

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 49.68  E-value: 6.14e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 218418692  597 SRHFHRIHFTPSFDQEVRCCGVCRRKIDNDYGGYSCNKdgCWYAAHSKCA 646
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSE--CDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 856-906 5.68e-07

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 46.99  E-value: 5.68e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 218418692  856 YKHDkHMLTLSYgeETSTMTYWCEVCEKKINPKERFYMCDEyCCVTLHIEC 906
Cdd:pfam03107   1 PSHP-HPLTLTG--SPRDGSFTCDACGLKIDGFFGFYSCSE-CDFVLHERC 47
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 487-532 3.42e-06

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 44.68  E-value: 3.42e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 218418692  487 LHPkHSLQLVLLNGDTTRECYCCDKDL--EEVFYYCSACDYAMNIACI 532
Cdd:pfam03107   2 SHP-HPLTLTGSPRDGSFTCDACGLKIdgFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 741-792 7.48e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 41.21  E-value: 7.48e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 218418692  741 PVHPHLLTLVGRSDlvmDATKSCSICSWR-CTTGFFYECSEreCRFKVHVQCA 792
Cdd:pfam03107   1 PSHPHPLTLTGSPR---DGSFTCDACGLKiDGFFGFYSCSE--CDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 802-848 6.45e-04

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 38.51  E-value: 6.45e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 218418692  802 SHMDPLFLTSKPGEERRCC-VCKELGHCSTNeTFNCIECDFALCFKCA 848
Cdd:pfam03107   2 SHPHPLTLTGSPRDGSFTCdACGLKIDGFFG-FYSCSECDFVLHERCA 48
 
Name Accession Description Interval E-value
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 682-732 5.50e-11

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 58.54  E-value: 5.50e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 218418692  682 FSHDHHhLKLDeniDRDYNENKLCQACITPI-YFGNFYSCMQCDFILHEECA 732
Cdd:pfam03107   1 PSHPHP-LTLT---GSPRDGSFTCDACGLKIdGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 544-588 7.32e-09

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 52.38  E-value: 7.32e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 218418692  544 KWHEHTLAQF--PRKTSLTCNVCAL-THSSCPFYMCPPCDFVVHQKCI 588
Cdd:pfam03107   1 PSHPHPLTLTgsPRDGSFTCDACGLkIDGFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 597-646 6.14e-08

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 49.68  E-value: 6.14e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 218418692  597 SRHFHRIHFTPSFDQEVRCCGVCRRKIDNDYGGYSCNKdgCWYAAHSKCA 646
Cdd:pfam03107   1 PSHPHPLTLTGSPRDGSFTCDACGLKIDGFFGFYSCSE--CDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 856-906 5.68e-07

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 46.99  E-value: 5.68e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 218418692  856 YKHDkHMLTLSYgeETSTMTYWCEVCEKKINPKERFYMCDEyCCVTLHIEC 906
Cdd:pfam03107   1 PSHP-HPLTLTG--SPRDGSFTCDACGLKIDGFFGFYSCSE-CDFVLHERC 47
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 487-532 3.42e-06

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 44.68  E-value: 3.42e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 218418692  487 LHPkHSLQLVLLNGDTTRECYCCDKDL--EEVFYYCSACDYAMNIACI 532
Cdd:pfam03107   2 SHP-HPLTLTGSPRDGSFTCDACGLKIdgFFGFYSCSECDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 741-792 7.48e-05

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 41.21  E-value: 7.48e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 218418692  741 PVHPHLLTLVGRSDlvmDATKSCSICSWR-CTTGFFYECSEreCRFKVHVQCA 792
Cdd:pfam03107   1 PSHPHPLTLTGSPR---DGSFTCDACGLKiDGFFGFYSCSE--CDFVLHERCA 48
C1_2 pfam03107
C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation ...
 802-848 6.45e-04

C1 domain; This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins.


Pssm-ID: 427141  Cd Length: 48  Bit Score: 38.51  E-value: 6.45e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 218418692  802 SHMDPLFLTSKPGEERRCC-VCKELGHCSTNeTFNCIECDFALCFKCA 848
Cdd:pfam03107   2 SHPHPLTLTGSPRDGSFTCdACGLKIDGFFG-FYSCSECDFVLHERCA 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH