|
Name |
Accession |
Description |
Interval |
E-value |
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
80-300 |
1.77e-21 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 90.74 E-value: 1.77e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 80 AKAMSRAGNAFQKQGELKTALQWFQRSLSEFRDPELVKKVKEMEKALKEAERLAYINPQLAQEEKNQGNDFFKKGDYPSA 159
Cdd:COG4785 13 ALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 160 MKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDP 239
Cdd:COG4785 93 IADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 187035816 240 SNEEAreGVRTCLRSNDEDPEKAKERSMADPevqeilrdpgmrMILEQMSNDPGAVREHLK 300
Cdd:COG4785 173 NDPER--ALWLYLAERKLDPEKALALLLEDW------------ATAYLLQGDTEEARELFK 219
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
11-264 |
1.32e-20 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 89.40 E-value: 1.32e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 11 LGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYaecvqfcEKAIEIGRETRADYKLIAKAMSRAGNAF 90
Cdd:COG2956 14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEY-------DRAIRIHQKLLERDPDRAEALLELAQDY 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 91 QKQGELKTALQWFQRSLSEFRDP--------ELVKKVKEMEKALKEAERLAYINPQLAQEEKNQGNDFFKKGDYPSAMKH 162
Cdd:COG2956 87 LKAGLLDRAEELLEKLLELDPDDaealrllaEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 163 YNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDPSNE 242
Cdd:COG2956 167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDD 246
|
250 260
....*....|....*....|..
gi 187035816 243 EAREGVRtcLRSNDEDPEKAKE 264
Cdd:COG2956 247 LLLALAD--LLERKEGLEAALA 266
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
3-246 |
4.18e-20 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 87.37 E-value: 4.18e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 3 DAAIAEKDLGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGRETradykliAKA 82
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-------AEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 83 MSRAGNAFQKQGELKTALQWFQRSLSefrdpelvkkvkemekalkeaerlayINPQLAQEEKNQGNDFFKKGDYPSAMKH 162
Cdd:COG0457 79 LNNLGLALQALGRYEEALEDYDKALE--------------------------LDPDDAEALYNLGLALLELGRYDEAIEA 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 163 YNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDPSNE 242
Cdd:COG0457 133 YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
....
gi 187035816 243 EARE 246
Cdd:COG0457 213 ILTL 216
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
32-249 |
1.36e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 83.52 E-value: 1.36e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 32 IELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGREtradyklIAKAMSRAGNAFQKQGELKTALQWFQRSLSefr 111
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD-------DAEALYNLGLAYLRLGRYEEALADYEQALE--- 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 112 dpelvkkvkemekalkeaerlayINPQLAQEEKNQGNDFFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQ 191
Cdd:COG0457 71 -----------------------LDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYD 127
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 187035816 192 RALEDCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDPSNEEAREGVR 249
Cdd:COG0457 128 EAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGE 185
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
80-245 |
5.68e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 84.27 E-value: 5.68e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 80 AKAMSRAGNAFQKQGELKTALQWFQRSLSEFRDPELvkkvkemekALKEAERLAYINPQLAQEEKNQGNDFFKKGDYPSA 159
Cdd:COG3914 61 ALAAGEAAAAAAALLLLAALLELAALLLQALGRYEE---------ALALYRRALALNPDNAEALFNLGNLLLALGRLEEA 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 160 MKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDP 239
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDP 211
|
....*.
gi 187035816 240 SNEEAR 245
Cdd:COG3914 212 DNADAH 217
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
80-264 |
1.74e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 77.35 E-value: 1.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 80 AKAMSRAGNAFQKQGELKTALQWFQRSLSefrdpelvkkvkemekalkeaerlayINPQLAQEEKNQGNDFFKKGDYPSA 159
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALE--------------------------LDPDDAEALYNLGLAYLRLGRYEEA 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 160 MKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDP 239
Cdd:COG0457 62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141
|
170 180
....*....|....*....|....*
gi 187035816 240 SNEEAREGvRTCLRSNDEDPEKAKE 264
Cdd:COG0457 142 DDADALYN-LGIALEKLGRYEEALE 165
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
135-253 |
1.04e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.43 E-value: 1.04e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 135 INPQLAQEEKNQGNDFFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKKDPKFIKGYIRK 214
Cdd:COG0457 3 LDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82
|
90 100 110
....*....|....*....|....*....|....*....
gi 187035816 215 GACLVAMREWSKAQRAYEDALAVDPSNEEAREGVRTCLR 253
Cdd:COG0457 83 GLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALL 121
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
1-258 |
1.01e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.56 E-value: 1.01e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 1 MSDAAIAEKDLGNAAYKQKDfetAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGRETRADYKLIA 80
Cdd:COG3914 2 AAAALLALAALAAAALLAAA---AAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 81 KAMSRAGNAFQKQGELKTALQWFQRSLSefRDPELVK----------KVKEMEKALKEAERLAYINPQLAQEEKNQGNDF 150
Cdd:COG3914 79 ALLELAALLLQALGRYEEALALYRRALA--LNPDNAEalfnlgnlllALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 151 FKKGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQRA 230
Cdd:COG3914 157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF 236
|
250 260
....*....|....*....|....*...
gi 187035816 231 YEDALAVDPSNEEAREGVRTCLRSNDED 258
Cdd:COG3914 237 EELLAALARGPSELSPFALLYLPDDDPA 264
|
|
| STI1 |
pfam17830 |
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ... |
259-311 |
3.30e-12 |
|
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.
Pssm-ID: 436075 Cd Length: 55 Bit Score: 60.65 E-value: 3.30e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 187035816 259 PEKAKERSMADPEVQEILRDPGMRMILEQMSNDPGAVREHLKNPEIFQKLMKL 311
Cdd:pfam17830 1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVL 53
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
123-241 |
4.55e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 62.52 E-value: 4.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 123 EKALKEAERLAYINPQLAQEEKNQGNDFFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIK 202
Cdd:COG4783 21 DEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALK 100
|
90 100 110
....*....|....*....|....*....|....*....
gi 187035816 203 KDPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDPSN 241
Cdd:COG4783 101 LDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
99-264 |
7.83e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 61.67 E-value: 7.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 99 ALQWFQRSLSEFRDPELVKKVKEMEKALKeaerlayINPQLAQEEKNQGNDFFKKGDYPSAMKHYNEAVKRDPENAVLYS 178
Cdd:COG2956 8 ALGWYFKGLNYLLNGQPDKAIDLLEEALE-------LDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 179 NRAACLTKLMEFQRALEDCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDPSNEEAREGVRTCLRSNDeD 258
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQG-D 159
|
....*.
gi 187035816 259 PEKAKE 264
Cdd:COG2956 160 YDEAIE 165
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
124-245 |
8.12e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.86 E-value: 8.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 124 KALKEAERLAYINPQLAQEEKNQGNDFFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKK 203
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 187035816 204 DPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDPSNEEAR 245
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
138-260 |
1.32e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.66 E-value: 1.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 138 QLAQEEKNQGNDFFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKKDPKFIKGYIRKGAC 217
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 187035816 218 LVAMREWSKAQRAYEDALAVDPSNEEAREGVRTCLRSNDEDPE 260
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDE 124
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
139-274 |
3.90e-10 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 60.19 E-value: 3.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 139 LAQEEKNQGNDFFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKKDPKFIKGYIRKGACL 218
Cdd:PLN03088 1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 187035816 219 VAMREWSKAQRAYEDALAVDPSNEEAREGVRTCLRSNDEDPEKAKERSMADPEVQE 274
Cdd:PLN03088 81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQPVPSDLPSSV 136
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
150-240 |
1.53e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.41 E-value: 1.53e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 150 FFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEdCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQR 229
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 187035816 230 AYEDALAVDPS 240
Cdd:COG3063 81 YLERALELDPS 91
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
88-239 |
1.87e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.74 E-value: 1.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 88 NAFQKQGELKTALQWFQRSLSEFRDPELVKKVKEMEKALKEAERLAYINPQLAQEEKNQGNDFFKKGDYPSAMKHYNEAV 167
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 187035816 168 KRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDP 239
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| STI1 |
smart00727 |
Heat shock chaperonin-binding motif; |
269-308 |
5.01e-09 |
|
Heat shock chaperonin-binding motif;
Pssm-ID: 128966 Cd Length: 41 Bit Score: 51.11 E-value: 5.01e-09
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 187035816 269 DPEVQEILRDPGMRMILEQMSNDPGAVREHLK-NPEIFQKL 308
Cdd:smart00727 1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQeNPQLLQLI 41
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
2-173 |
9.75e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.27 E-value: 9.75e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 2 SDAAIAEKDLGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGRETRADYKLIAK 81
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 82 AMSRAGNAfqkqgelktalqwfqrslsefrdpelvkkvkemEKALKEAERLAYINPQLAQEEKNQGNDFFKKGDYPSAMK 161
Cdd:COG4783 81 ALLKAGDY---------------------------------DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIA 127
|
170
....*....|..
gi 187035816 162 HYNEAVKRDPEN 173
Cdd:COG4783 128 ALEKALELDPDD 139
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
126-214 |
1.20e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 56.15 E-value: 1.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 126 LKEAERLAYinpqlAQEEKNQGNDFFKKGDYPSAMKHYNEAV--KRDPenaVLYSNRAACLTKLMEFQRALEDCDTCIKK 203
Cdd:TIGR00990 118 LSEEERKKY-----AAKLKEKGNKAYRNKDFNKAIKLYSKAIecKPDP---VYYSNRAACHNALGDWEKVVEDTTAALEL 189
|
90
....*....|.
gi 187035816 204 DPKFIKGYIRK 214
Cdd:TIGR00990 190 DPDYSKALNRR 200
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
5-241 |
4.49e-08 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 54.22 E-value: 4.49e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 5 AIAEKDLGNAAYKQKDFETAHLHYDKAIELDSTNItFYNNKAAVFFEEKKYAECVQFCEKAIEIgretRADYkliAKAMS 84
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALEL----DPDY---SKALN 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 85 RAGNAFQKQGELKTAL------------------QWFQRSLSEFRDPELVKKVKEMEKALKEAERLA----YINPQL--- 139
Cdd:TIGR00990 199 RRANAYDGLGKYADALldltasciidgfrneqsaQAVERLLKKFAESKAKEILETKPENLPSVTFVGnylqSFRPKPrpa 278
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 140 -----AQEEKNQGNDFFKKG----------DYPSAMKHYNEAV---KRDPENAVLYSNRAACLTKLMEFQRALEDCDTCI 201
Cdd:TIGR00990 279 gledsNELDEETGNGQLQLGlkspeskadeSYEEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 187035816 202 KKDPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDPSN 241
Cdd:TIGR00990 359 ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED 398
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
14-108 |
6.73e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.78 E-value: 6.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 14 AAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFcEKAIEIGREtradyklIAKAMSRAGNAFQKQ 93
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPN-------NAEALLNLAELLLEL 72
|
90
....*....|....*
gi 187035816 94 GELKTALQWFQRSLS 108
Cdd:COG3063 73 GDYDEALAYLERALE 87
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
3-168 |
6.94e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 52.22 E-value: 6.94e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 3 DAAIAEKDLGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIgretRADYkliAKA 82
Cdd:COG4785 71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALEL----DPDY---AYA 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 83 MSRAGNAFQKQGELKTALQWFQRSLSEfrDPELVkkvkemEKALKEAERLAYINPQLAQEEKNQ--GNDFFKKGDYPSAM 160
Cdd:COG4785 144 YLNRGIALYYLGRYELAIADLEKALEL--DPNDP------ERALWLYLAERKLDPEKALALLLEdwATAYLLQGDTEEAR 215
|
....*...
gi 187035816 161 KHYNEAVK 168
Cdd:COG4785 216 ELFKLALA 223
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
3-142 |
1.02e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 52.42 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 3 DAAIAEKDLGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGRETradykliAKA 82
Cdd:COG2956 142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDY-------LPA 214
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 187035816 83 MSRAGNAFQKQGELKTALQWFQRSLSEFRDPELVKKVKEMEKALKEAER-LAYINPQLAQE 142
Cdd:COG2956 215 LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAaLALLERQLRRH 275
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
42-107 |
3.33e-07 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.00 E-value: 3.33e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 187035816 42 YNNKAAVFFEEKKYAECVQFCEKAIEIGRETR-ADYKLIAKAMSRAGNAFQKQGELKTALQWFQRSL 107
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLgPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
11-265 |
4.62e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 51.24 E-value: 4.62e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 11 LGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAEC-----------------------VQFCEKAIE 67
Cdd:TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAekhadallkkapnsplahylkalVDFQKKNYE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 68 IGRETRADYKLIA----KAMSRAGNAFQKQGELKTALQWFQRSLSEFRDPELVKKV--------KEMEKALKEAERLAYI 135
Cdd:TIGR02917 279 DARETLQDALKSApeylPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLlasiqlrlGRVDEAIATLSPALGL 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 136 NPQLAQEEKNQGNDFFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAacLTKLM--EFQRALEDCDTCIKKDPK------- 206
Cdd:TIGR02917 359 DPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG--ISKLSqgDPSEAIADLETAAQLDPElgradll 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 207 FIKGYIR---------------------------KGACLVAMREWSKAQRAYEDALAVDPSNEEAREGVRTcLRSNDEDP 259
Cdd:TIGR02917 437 LILSYLRsgqfdkalaaakklekkqpdnaslhnlLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR-IDIQEGNP 515
|
....*.
gi 187035816 260 EKAKER 265
Cdd:TIGR02917 516 DDAIQR 521
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
11-108 |
4.29e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 4.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 11 LGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGRETradykliAKAMSRAGNAF 90
Cdd:COG4235 23 LGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDN-------PEALYLLGLAA 95
|
90
....*....|....*...
gi 187035816 91 QKQGELKTALQWFQRSLS 108
Cdd:COG4235 96 FQQGDYAEAIAAWQKLLA 113
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
73-205 |
4.70e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 4.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 73 RADYKLIAKAMSRAGNAFQKQGELKTALQWFQRSLSEFRDPELVKKVKEMEKALKEAERLAYINPQLAQEEKNQGNDFFK 152
Cdd:COG5010 21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 187035816 153 KGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKKDP 205
Cdd:COG5010 101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
3-107 |
6.26e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.72 E-value: 6.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 3 DAAIAEKDLGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGRETradykliAKA 82
Cdd:COG5010 52 KAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN-------PNA 124
|
90 100
....*....|....*....|....*
gi 187035816 83 MSRAGNAFQKQGELKTALQWFQRSL 107
Cdd:COG5010 125 YSNLAALLLSLGQDDEAKAALQRAL 149
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
3-170 |
7.07e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 46.65 E-value: 7.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 3 DAAIAEKDLGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIgretradYKLIAKA 82
Cdd:COG2956 108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL-------DPDCARA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 83 MSRAGNAFQKQGELKTALQWFQRSLSefRDPELV----------KKVKEMEKALKEAERLAYINPQLAQEEkNQGNDFFK 152
Cdd:COG2956 181 LLLLAELYLEQGDYEEAIAALERALE--QDPDYLpalprlaelyEKLGDPEEALELLRKALELDPSDDLLL-ALADLLER 257
|
170
....*....|....*...
gi 187035816 153 KGDYPSAMKHYNEAVKRD 170
Cdd:COG2956 258 KEGLEAALALLERQLRRH 275
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
147-182 |
1.32e-05 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 41.69 E-value: 1.32e-05
10 20 30
....*....|....*....|....*....|....*.
gi 187035816 147 GNDFFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAA 182
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGL 36
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
3-245 |
2.75e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 45.84 E-value: 2.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 3 DAAIAEKDLGNAAYK--QKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGRETRADYKLIA 80
Cdd:TIGR02917 155 DPRSLYAKLGLAQLAlaENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALA 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 81 KAMSRAGNAFQKQGELKTALQWF-QRSLSEFRDPELVKKVKEMEKALKEAERLAYINPQLAQEEKNQGNDFFKKGDYPSA 159
Cdd:TIGR02917 235 TILIEAGEFEEAEKHADALLKKApNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQA 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 160 MKHYNEAVKRDPENavLYSNRAACLTKL-----MEFQRALEDCDTCIKKDPKF--IKGYIrkgacLVAMREWSKAQRAYE 232
Cdd:TIGR02917 315 YQYLNQILKYAPNS--HQARRLLASIQLrlgrvDEAIATLSPALGLDPDDPAAlsLLGEA-----YLALGDFEKAAEYLA 387
|
250
....*....|...
gi 187035816 233 DALAVDPSNEEAR 245
Cdd:TIGR02917 388 KATELDPENAAAR 400
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
3-140 |
3.45e-05 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.61 E-value: 3.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 3 DAAIAEKDLGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGRETRADYKLIAKA 82
Cdd:COG0457 108 DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAA 187
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 187035816 83 MSRAGNAFQKQGELKTALQWFQRSLSEFRDPELVKKVKEMEKALKEAERLAYINPQLA 140
Cdd:COG0457 188 LALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
5-248 |
9.25e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 43.82 E-value: 9.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 5 AIAEKDLGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGRET------RADYKL 78
Cdd:TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDpdiyyhRAQLHF 410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 79 IAKAMSRAGNAFQKQGELktalqwfqrslsefrDPELVkkvkemekalkeaerLAYInpQLAQEEknqgndfFKKGDYPS 158
Cdd:TIGR00990 411 IKGEFAQAGKDYQKSIDL---------------DPDFI---------------FSHI--QLGVTQ-------YKEGSIAS 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 159 AMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCI----KKDPKF--IKGYIRKGACLVAMRE-WSKAQRAY 231
Cdd:TIGR00990 452 SMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIelekETKPMYmnVLPLINKALALFQWKQdFIEAENLC 531
|
250
....*....|....*..
gi 187035816 232 EDALAVDPSNEEAREGV 248
Cdd:TIGR00990 532 EKALIIDPECDIAVATM 548
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
12-51 |
1.55e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 38.61 E-value: 1.55e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 187035816 12 GNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFE 51
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
10-130 |
1.86e-04 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 42.85 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 10 DLGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGREtradyklIAKAMSRAGNA 89
Cdd:PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-------LAKAYLRKGTA 79
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 187035816 90 FQKQGELKTALQWFQRSLS-EFRDPELVKKVKEMEKALKEAE 130
Cdd:PLN03088 80 CMKLEEYQTAKAALEKGASlAPGDSRFTKLIKECDEKIAEEE 121
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
10-86 |
2.06e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 2.06e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 187035816 10 DLGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGREtRADYKLIAKAMSRA 86
Cdd:COG4235 56 DLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA-DAPARLLEASIAEA 131
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
104-245 |
2.57e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.79 E-value: 2.57e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 104 QRSLSEFRDPElvKKVKEMEKALKEAE----RLayinpQLAQEeknqgndFFKKGDYPSAMKHYNEAVKRD-PENAVLYS 178
Cdd:COG4700 63 QRAARNALDPG--RELRELEKALEFADtvqnRV-----RLADA-------LLELGRYDEAIELYEEALTGIfADDPHILL 128
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 187035816 179 NRAACLTKLMEFQRALEDCDTCIKKDPKFIK--GYIRKGACLVAMREWSKAQRAYEdALAVDPSNEEAR 245
Cdd:COG4700 129 GLAQALFELGRYAEALETLEKLIAKNPDFKSsdAHLLYARALEALGDLEAAEAELE-ALARRYSGPEAR 196
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
46-260 |
3.65e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.38 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 46 AAVFFEEKKYAECVQFCEKAIEIGRETRADYKLIAKAMSRAGnAFQKQGELKTALQWFQ----------RSLSEFRDPEL 115
Cdd:TIGR02917 63 GKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQG-KFQQVLDELPGKTLLDdegaaellalRGLAYLGLGQL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 116 VKKVKEMEKALKEAERLAYINPQLAQEEKNQGndffkkgDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALE 195
Cdd:TIGR02917 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAEN-------RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALA 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 196 DCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDPSN-----------------EEAREGVRTCLRSNDED 258
Cdd:TIGR02917 215 AYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSplahylkalvdfqkknyEDARETLQDALKSAPEY 294
|
..
gi 187035816 259 PE 260
Cdd:TIGR02917 295 LP 296
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
78-245 |
4.31e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.99 E-value: 4.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 78 LIAKAMSRAGNAFQKQGELKTALQwfQRSLSEFRDPELVK---KVKEMEKALKEAERLAYI-NPQLAQEEKNQGNDFFKK 153
Cdd:TIGR02917 61 LLGKIYLALGDYAAAEKELRKALS--LGYPKNQVLPLLARaylLQGKFQQVLDELPGKTLLdDEGAAELLALRGLAYLGL 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 154 GDYPSAMKHYNEAVKRDPENavLYSNRAACLTKLMEFQ--RALEDCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQRAY 231
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRS--LYAKLGLAQLALAENRfdEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY 216
|
170
....*....|....
gi 187035816 232 EDALAVDPSNEEAR 245
Cdd:TIGR02917 217 RKAIALRPNNIAVL 230
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
11-74 |
4.86e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 4.86e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 187035816 11 LGNAAYKQKDFETAhLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGRETRA 74
Cdd:COG3063 32 LGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
14-126 |
5.22e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 14 AAYKQKDFETAHLHYDKAIELDSTNITF---YNNKAAVFFEEKKYAECVQFCEKAIEigreTRADYKLIAKAMSRAGNAF 90
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLK----RYPDSPKAPDALLKLGLSY 77
|
90 100 110
....*....|....*....|....*....|....*.
gi 187035816 91 QKQGELKTALQWFQRSLSEFRDPELVKKVKEMEKAL 126
Cdd:COG1729 78 LELGDYDKARATLEELIKKYPDSEAAKEARARLARL 113
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
11-264 |
6.29e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 41.61 E-value: 6.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 11 LGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEI-----------------GRETR 73
Cdd:TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELkpdnteaqiglaqlllaAKRTE 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 74 ADYKLI-----AKAMSRAGNAFQ-----KQGELKTALQWFQRSLSEFRDPELVKKV-------KEMEKALKEAERLAYIN 136
Cdd:TIGR02917 687 SAKKIAkslqkQHPKAALGFELEgdlylRQKDYPAAIQAYRKALKRAPSSQNAIKLhrallasGNTAEAVKTLEAWLKTH 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 137 PQLAQEEKNQGNDFFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEfQRALEDCDTCIK---KDPKFIKGYir 213
Cdd:TIGR02917 767 PNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKlapNIPAILDTL-- 843
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 187035816 214 kGACLVAMREWSKAQRAYEDALAVDPSNEEAREGVRTCLRSNDEDPEKAKE 264
Cdd:TIGR02917 844 -GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKE 893
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
17-175 |
6.53e-04 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 40.40 E-value: 6.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 17 KQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEigretRADYKLIAKAMSRAGNAFQKQGEL 96
Cdd:TIGR02521 77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE-----DPLYPQPARSLENAGLCALKAGDF 151
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 187035816 97 KTALQWFQRSLSefRDPELVKKVKEMekalkeAERlayinpqlaqeeknqgndFFKKGDYPSAMKHYNEAVKRDPENAV 175
Cdd:TIGR02521 152 DKAEKYLTRALQ--IDPQRPESLLEL------AEL------------------YYLRGQYKDARAYLERYQQTYNQTAE 204
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
149-246 |
7.05e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 38.82 E-value: 7.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 149 DFFKKGDYPSAMKHYNEAVKRDPENAVL---YSNRAACLTKLMEFQRALEDCDTCIKKDPKFIK---GYIRKGACLVAMR 222
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPLApdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81
|
90 100
....*....|....*....|....
gi 187035816 223 EWSKAQRAYEDALAVDPSNEEARE 246
Cdd:COG1729 82 DYDKARATLEELIKKYPDSEAAKE 105
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
5-38 |
9.14e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 36.24 E-value: 9.14e-04
10 20 30
....*....|....*....|....*....|....
gi 187035816 5 AIAEKDLGNAAYKQKDFETAHLHYDKAIELDSTN 38
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
121-206 |
9.51e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.83 E-value: 9.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 121 EMEKALKEAERLAYINPQLAQEEKNQGNDFFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTC 200
Cdd:COG4235 32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
....*.
gi 187035816 201 IKKDPK 206
Cdd:COG4235 112 LALLPA 117
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
174-207 |
1.57e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.47 E-value: 1.57e-03
10 20 30
....*....|....*....|....*....|....
gi 187035816 174 AVLYSNRAACLTKLMEFQRALEDCDTCIKKDPKF 207
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
10-114 |
1.60e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 39.48 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 10 DLGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAA-VFFEEKKYAECVQFCEKAIEIGRETRADYKLIAKAMsragn 88
Cdd:COG4700 94 RLADALLELGRYDEAIELYEEALTGIFADDPHILLGLAqALFELGRYAEALETLEKLIAKNPDFKSSDAHLLYAR----- 168
|
90 100
....*....|....*....|....*.
gi 187035816 89 AFQKQGELKTALQWFQRSLSEFRDPE 114
Cdd:COG4700 169 ALEALGDLEAAEAELEALARRYSGPE 194
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
144-173 |
2.09e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 35.11 E-value: 2.09e-03
10 20 30
....*....|....*....|....*....|
gi 187035816 144 KNQGNDFFKKGDYPSAMKHYNEAVKRDPEN 173
Cdd:smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
3-68 |
2.59e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.02 E-value: 2.59e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 187035816 3 DAAIAEKDLGNAAYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEI 68
Cdd:COG5010 86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
192-264 |
3.68e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 36.91 E-value: 3.68e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 187035816 192 RALEDCDTCIKKDPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDPSNEEAREGVRTCLRSNDeDPEKAKE 264
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-DTEEAEE 72
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
3-263 |
3.82e-03 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 38.91 E-value: 3.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 3 DAAIAEKDLGNA-------AYKQKDFETAHLHYDKAIELDSTNITFYNNKAAVFFEEKKYAECVQFCEKAIEIGRETrad 75
Cdd:TIGR02917 422 TAAQLDPELGRAdlllilsYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF--- 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 76 ykliAKAMSRAGNAFQKQGELKTALQWFQRSLSEfrDPELVKKVKEM----------EKALKEAERLAYINPQLAQEEKN 145
Cdd:TIGR02917 499 ----FPAAANLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALaglylrtgneEEAVAWLEKAAELNPQEIEPALA 572
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 146 QGNDFFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKKDPKFIKGYIRKGACLVAMREWS 225
Cdd:TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYA 652
|
250 260 270
....*....|....*....|....*....|....*...
gi 187035816 226 KAQRAYEDALAVDPSNEEAREGVrTCLRSNDEDPEKAK 263
Cdd:TIGR02917 653 KAITSLKRALELKPDNTEAQIGL-AQLLLAAKRTESAK 689
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
140-173 |
5.64e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 33.93 E-value: 5.64e-03
10 20 30
....*....|....*....|....*....|....
gi 187035816 140 AQEEKNQGNDFFKKGDYPSAMKHYNEAVKRDPEN 173
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
124-260 |
7.38e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 36.48 E-value: 7.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 187035816 124 KALKEAERLAYINPQLAQEEKNQGNDFFKKGDYPSAMKHYNEAVKRDPENAVLYSNRAACLTKLMEFQRALEDCDTCIKK 203
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 187035816 204 DPKFIKGYIRKGACLVAMREWSKAQRAYEDALAVDPSNEEAREGVRTCLRSNDEDPE 260
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
|
|
| |
