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Conserved domains on  [gi|147866231|emb|CAN79943|]
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hypothetical protein VITISV_021078 [Vitis vinifera]

Protein Classification

PAM68 family protein( domain architecture ID 10571573)

PAM68 family protein is a DUF3464 domain-containing protein; similar to Arabidopsis thaliana chloroplastic protein PAM68 (PHOTOSYNTHESIS AFFECTED MUTANT 68), which is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3464 pfam11947
Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the ...
 94-190 2.14e-53

Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the Sll0933 homolog from Cyanobacteria (blue-green algae). PAM68 is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.


:

Pssm-ID: 432211  Cd Length: 150  Bit Score: 167.47  E-value: 2.14e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147866231   94 IPEIVTNRMISRMGFSVGIPLMIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPLREGSFL 173
Cdd:pfam11947  51 IPEVVSQRMIRRMAFFSGIPTALGVATFVVFYLLVSGAWFDLPPWAVLLVSMGFFGLGVLGLSYGVLSASWDEEREGSLL 130

                          90       100
                  ....*....|....*....|
gi 147866231  174 GWTEAQNNWPVF---WQSLW 190
Cdd:pfam11947 131 GWEEFKTNWGRMieaWRSAR 150
 
Name Accession Description Interval E-value
DUF3464 pfam11947
Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the ...
 94-190 2.14e-53

Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the Sll0933 homolog from Cyanobacteria (blue-green algae). PAM68 is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.


Pssm-ID: 432211  Cd Length: 150  Bit Score: 167.47  E-value: 2.14e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147866231   94 IPEIVTNRMISRMGFSVGIPLMIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPLREGSFL 173
Cdd:pfam11947  51 IPEVVSQRMIRRMAFFSGIPTALGVATFVVFYLLVSGAWFDLPPWAVLLVSMGFFGLGVLGLSYGVLSASWDEEREGSLL 130

                          90       100
                  ....*....|....*....|
gi 147866231  174 GWTEAQNNWPVF---WQSLW 190
Cdd:pfam11947 131 GWEEFKTNWGRMieaWRSAR 150
Pam68 COG5778
Photosystem II assembly factor PAM68, DUF3464 (PF11947) domain [Energy production and ...
 94-182 2.49e-28

Photosystem II assembly factor PAM68, DUF3464 (PF11947) domain [Energy production and conversion];


Pssm-ID: 444488  Cd Length: 158  Bit Score: 103.49  E-value: 2.49e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147866231  94 IPEIVTNRMISRMGFSVGIPLMIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPLREGSFL 173
Cdd:COG5778   53 IPEVVSQRMVRRMALFSGIPTALGILTFVVSYLIVSNDWFELPNTAVLLVSMGFFGLGVLGLSYGVLSASWDEERSGSLL 132


                 ....*....
gi 147866231 174 GWTEAQNNW 182
Cdd:COG5778  133 GWQEFKTNF 141
 
Name Accession Description Interval E-value
DUF3464 pfam11947
Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the ...
 94-190 2.14e-53

Photosynthesis affected mutant 68; This entry includes chloroplastic protein PAM68 and the Sll0933 homolog from Cyanobacteria (blue-green algae). PAM68 is involved in early steps in photosystem II (PSII) biogenesis and in maturation and stability of newly synthesized psbA protein.


Pssm-ID: 432211  Cd Length: 150  Bit Score: 167.47  E-value: 2.14e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147866231   94 IPEIVTNRMISRMGFSVGIPLMIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPLREGSFL 173
Cdd:pfam11947  51 IPEVVSQRMIRRMAFFSGIPTALGVATFVVFYLLVSGAWFDLPPWAVLLVSMGFFGLGVLGLSYGVLSASWDEEREGSLL 130

                          90       100
                  ....*....|....*....|
gi 147866231  174 GWTEAQNNWPVF---WQSLW 190
Cdd:pfam11947 131 GWEEFKTNWGRMieaWRSAR 150
Pam68 COG5778
Photosystem II assembly factor PAM68, DUF3464 (PF11947) domain [Energy production and ...
 94-182 2.49e-28

Photosystem II assembly factor PAM68, DUF3464 (PF11947) domain [Energy production and conversion];


Pssm-ID: 444488  Cd Length: 158  Bit Score: 103.49  E-value: 2.49e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 147866231  94 IPEIVTNRMISRMGFSVGIPLMIGLLFFPFFYYLKVGLKIDVPTWVPFIVSFFFFGSALLGVSYGIVSSSWDPLREGSFL 173
Cdd:COG5778   53 IPEVVSQRMVRRMALFSGIPTALGILTFVVSYLIVSNDWFELPNTAVLLVSMGFFGLGVLGLSYGVLSASWDEERSGSLL 132


                 ....*....
gi 147866231 174 GWTEAQNNW 182
Cdd:COG5778  133 GWQEFKTNF 141
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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