|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13700 |
PRK13700 |
conjugal transfer protein TraD; Provisional |
1-684 |
0e+00 |
|
conjugal transfer protein TraD; Provisional
Pssm-ID: 184256 [Multi-domain] Cd Length: 732 Bit Score: 839.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 1 MSLNPRDLTQGGQVAFMRLKMFLQINNLISY-YVIMGTVLFGLaVVLMRMSIQNLTNGIIYWFVRFMSPFTERMVSQPVY 79
Cdd:PRK13700 1 MSFNAKDMTQGGQIASMRIRMFSQIANIILYcLFIFFWILVGL-VLWVKISWQTFVNGCIYWWCTTLEGMRDLIKSQPVY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 80 NIRYYEHTLQYSARQILSDNYTVYCGQLLKQELVIAGCASLLVAFLATLAVYWYLGRTGRQQSEDEIIGGRVLSESPKDV 159
Cdd:PRK13700 80 EIQYYGKTFRMNAAQVLHDKYMIWCGEQLWSAFVLAAVVALVICLITFFVVSWILGRQGKQQSENEVTGGRQLTDNPKDV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 160 ARLLKKRGEASDIRIDDLPLKLDSEIQNFAMHGTVSTGKSTLMRKILKQLRDRGDLVIIYDKGCTFVEDFCDESRDEVLN 239
Cdd:PRK13700 160 ARMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYYDPSIDKILN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 240 ALDSRCPNWDLWEECRTISELENASTTLIPASSGEDPFWQGSARTIFAEGAERMRKDEGRSYNKFLRTLLAIQLDQLRAF 319
Cdd:PRK13700 240 PLDARCAAWDLWKECLTQPDFDNTANTLIPMGTKEDPFWQGSGRTIFAEAAYLMRNDPNRSYSKLVDTLLSIKIEKLRTY 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 320 LAGTPASTLVDGKIEKTAISIRSVLTNYVKAMRYLQGIDRPGrEKFTIREWMKGQADKSKNGWLFITSDEQNHESLKPLI 399
Cdd:PRK13700 320 LRNSPAANLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEHNG-EPFTIRDWMRGVREDQKNGWLFISSNADTHASLKPVI 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 400 SLWLSIAATSLLAMGPNRQRRVWFFYDELASLHKLSTLPRIISEARKFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNT 479
Cdd:PRK13700 399 SMWLSIAIRGLLAMGENRNRRVWFFCDELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVMNT 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 480 KFFFRSPSAQIAKFVEEDIGETRRLKFSEQTSFGHEQVRDGISFGKEEERVSIVSYSDVQSLNDLQCFVTLPGSYPVVKL 559
Cdd:PRK13700 479 RAFFRSPSHKIAEFAAGEIGEKEHLKASEQYSYGADPVRDGVSTGKDMERQTLVSYSDIQSLPDLTCYVTLPGPYPAVKL 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 560 TMKYDAMPKVADALLLRDVQTSLDKNIEDELVRRTEEERlSLDGLFTPVTPVPESA------------------------ 615
Cdd:PRK13700 559 SLKYQARPKVAPEFIPRDINPEMENRLSAVLAAREAEGR-QMASLFEPDVPEVASGedvtqaeqpqqpqqpqqpqqpqqp 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 616 -----------------SASSGGTERDI----EQDLPREMPPGLNGDGEVVDFAAYEAWEQGQHQT--RDMTRREEVNIN 672
Cdd:PRK13700 638 qqpvspvindkksdagvNVPAGGIEQELkmkpEEEMEQQLPPGISESGEVVDMAAYEAWQQENHPDiqQQMQRREEVNIN 717
|
730
....*....|....
gi 2243556099 673 --HATDKTHEIDGD 684
Cdd:PRK13700 718 vhRERGEDVEPGDD 731
|
|
| TraD_Ftype |
TIGR02759 |
type IV conjugative transfer system coupling protein TraD; The TraD protein performs an ... |
9-578 |
0e+00 |
|
type IV conjugative transfer system coupling protein TraD; The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Pssm-ID: 131806 Cd Length: 566 Bit Score: 690.29 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 9 TQGGQVAFMRLKMFLQINNLISYYVIMG-TVLFGLAVVLMRMsiQNLTNGIIYWFVRFMSPFTERMVSQPVYNIRYYEHT 87
Cdd:TIGR02759 2 TRGGQITFHNIRMFFQVTKTLFYWMFILfIILTGLILWFMAS--VNTFLGNIYYWEAQLFTLVGHIKTQEVFTPWFGKTY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 88 LQYSArQILSDNYTVYCGQLLKQELVIAGCASLLVAFLATLAVYWYLGRTGRQQSEDEIIGGRVLSeSPKDVARLLKKRG 167
Cdd:TIGR02759 80 TTYQA-QILTNPYVIRAYDQLWQALQKSALAALAISLVVFLLFMFFFIKRGEQQSKDHFIRGSQLS-SPKELIKKLKKSR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 168 EASDIRIDDLPL-KLDSEIQNFAMHGTVSTGKSTLMRKILKQLRDRGDLVIIYDKGCTFVEDFCDESRDEVLNALDSRCP 246
Cdd:TIGR02759 158 RASDIKIGGLPLiKFGSETQHILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKGCTFTSRFYDPSQDVILNPFDERCA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 247 NWDLWEECRTISELENASTTLIPASSGEDPFWQGSARTIFAEGAERMRKDEGRSYNKFLRTLLAIQLDQLRAFLAGTPAS 326
Cdd:TIGR02759 238 NWDVWRECKDKTDFENMAEALIPMHGDGDPFWVDSARTIFTSTAYKMRNDPKRSTSKLLDLLLTSELEELRDYLKGTESA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 327 TLVDGKIEKTAISIRSVLTNYVKAMRYLQGIDRPGREKFTIREWMKgqaDKSKNGWLFITSDEQNHESLKPLISLWLSIA 406
Cdd:TIGR02759 318 SLVSDKIEKTAISIKSVLATYLKSLRFLEGLDRKGREPFSIRDWIL---NEQKNGWLFISSNAQQHASLKPLISMWLSIA 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 407 ATSLLAMGPNRQRRVWFFYDELASLHKLSTLPRIISEARKFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNTKFFFRSP 486
Cdd:TIGR02759 395 SRGLLSLPPNDDRRIWFIMDELPSLHKLPDLDETIAEVRKFGGCYVLGIQSFAQLEKIYGQNGAATLFDLLNTRFFFRSP 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 487 SAQIAKFVEEDIGETRRLKFSEQTSFGHEQVRDGISFGKEEERVSIVSYSDVQSLNDLQCFVTLPGSYPVVKLTMKYDAM 566
Cdd:TIGR02759 475 SAKMAKIVSDDLGEQEIEESKENYSYGANSVRDGVSLGSQTITRPLVSYSDIQFLDDLQCYVRLPGNYPITKLKLKYDER 554
|
570
....*....|..
gi 2243556099 567 PKVADALLLRDV 578
Cdd:TIGR02759 555 PKICPPFIPRDI 566
|
|
| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
177-562 |
3.29e-118 |
|
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 358.92 E-value: 3.29e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 177 LPLKLDSEIQNFAMHGTVSTGKSTLMRKILKQLRDRGDLVIIYDKGCTFVEDFCDESRDEVLNALDSRCPNWDLWEECRT 256
Cdd:pfam10412 7 VPLPKRSETRHTLIIGTTGSGKTQALRGLLDQARARGDRAIIFDLTGAFTERFYDPGRDILLNPLDARSPAWSPFAECKT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 257 ISELENASTTLIPAS-SGEDPFWQGSARTIFAEGAERMRKDEGRSYNKFLRTLLAIQLDQLRAFLAGTPASTLVDGKIEK 335
Cdd:pfam10412 87 PADFAAIAAALIPEDgGGSDPFWALAARTVLVDTLRALQRTGRKTNAALLRALLTADLDELHELLAGTAAAPLTAPEAER 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 336 TAISIRSVLTNYVKAMRYLqgidRPGREKFTIREWMKGQAdksKNGWLFITSDEQNHESLKPLISLWLSIAATSLLAMGP 415
Cdd:pfam10412 167 TTASIRATLATNLRALRFL----APDGERFSIREWITEED---PGGWLFITYRADQRAALRPLLSCWLDLAIRALLSLPP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 416 NRQRRVWFFYDELASLHKLSTLPRIISEARKFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNTKFFFRSPSAQIAKFVE 495
Cdd:pfam10412 240 SRDRRLWFFLDELPALGRLPSLKDLLAEGRKFGGAVVLGLQSIAQLREIYGEDGAQTILSNCGTKLILRVSDGETAELCS 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2243556099 496 EDIG--ETRRLkfSEQTSFGHEQVRDGISFGKEEERVSIVSYSDVQSLNDLQCFVTLPGSYPVVKLTMK 562
Cdd:pfam10412 320 DLLGdrEVERM--DESLSYGANNSRDGVTLGRQRRVRPLVLPSEIMNLPRLHGYLKFPDGFPVARVTLP 386
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
187-580 |
5.54e-71 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 236.42 E-value: 5.54e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 187 NFAMHGTVSTGKST-LMRKILKQLRdRGDLVIIYDKGCTFVE---DFCDESRDEV--LNALD-SRCPNWDLWEECRTISE 259
Cdd:COG3505 1 HVLVIGPTGSGKTVgLVIPNLTQLA-RGESVVVTDPKGDLAEltaGFRRRAGYDVyvFDPFDpERSHRWNPLDEIRDPAD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 260 LENASTTLIPA---SSGEDPFWQGSARTIFAEGAERMRKDEGRSYNKfLRTLLAIQLDQLRAFLAGTP-------ASTLV 329
Cdd:COG3505 80 AQELAEALIPAlggGGGGDPFWREAARALLAALILALAEEGRRTLAD-VYRLLSEPEEELRELLEALPesphppvADTLA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 330 D--GKIEKTAISIRSVLTNYVKAMRYLQGIDRPGREKFTIREWMKgqadksKNGWLFITSDEQNHESLKPLISLWLSIAA 407
Cdd:COG3505 159 AflNAAEKTRSSVLSTLASALELLSDPEVAALTSGSDFDLRDLIR------EKGTLYLVLPPDDLSTLAPLLRLLLSQLI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 408 TSLLAMGPNR---QRRVWFFYDELASLHKLSTLPRIISEARKFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNTKFFFR 484
Cdd:COG3505 233 RALLRRAERSgrlPRPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAETILGNCGTKIFLG 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 485 SPSAQIAKFVEEDIGETRRLKFSEQTSFGHEqvrdgiSFGKEEERVSIVSYSDVQSLNDLQCFVTLPGSYPVVKLTMKYD 564
Cdd:COG3505 313 VNDPETAEYLSELLGKRTVERRSESRSRGSR------SRSRSEQERPLLTPDELRRLPDGEAIVLVRGGPPIRAKKIRYY 386
|
410
....*....|....*.
gi 2243556099 565 AMPKVADALLLRDVQT 580
Cdd:COG3505 387 KDPEPAPAFEPRDAEA 402
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
366-485 |
3.18e-31 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 118.86 E-value: 3.18e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 366 TIREWMKGQA----DKSKNGWLFITSDEQNHESLKPLISLWLSIAATSLLAMGPNR-QRRVWFFYDELASLHKLSTLPRI 440
Cdd:cd01127 20 LLDQAARGGSviitDPKGELFLVIPDRDDSFAALRALFFNQLFRALTELASLSPGRlPRRVWFILDEFANLGRIPNLPNL 99
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2243556099 441 ISEARKFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNTKFFFRS 485
Cdd:cd01127 100 LATGRKRGISVVLILQSLAQLEAVYGKDGAQTILGNCNTKLYLGT 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13700 |
PRK13700 |
conjugal transfer protein TraD; Provisional |
1-684 |
0e+00 |
|
conjugal transfer protein TraD; Provisional
Pssm-ID: 184256 [Multi-domain] Cd Length: 732 Bit Score: 839.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 1 MSLNPRDLTQGGQVAFMRLKMFLQINNLISY-YVIMGTVLFGLaVVLMRMSIQNLTNGIIYWFVRFMSPFTERMVSQPVY 79
Cdd:PRK13700 1 MSFNAKDMTQGGQIASMRIRMFSQIANIILYcLFIFFWILVGL-VLWVKISWQTFVNGCIYWWCTTLEGMRDLIKSQPVY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 80 NIRYYEHTLQYSARQILSDNYTVYCGQLLKQELVIAGCASLLVAFLATLAVYWYLGRTGRQQSEDEIIGGRVLSESPKDV 159
Cdd:PRK13700 80 EIQYYGKTFRMNAAQVLHDKYMIWCGEQLWSAFVLAAVVALVICLITFFVVSWILGRQGKQQSENEVTGGRQLTDNPKDV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 160 ARLLKKRGEASDIRIDDLPLKLDSEIQNFAMHGTVSTGKSTLMRKILKQLRDRGDLVIIYDKGCTFVEDFCDESRDEVLN 239
Cdd:PRK13700 160 ARMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYYDPSIDKILN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 240 ALDSRCPNWDLWEECRTISELENASTTLIPASSGEDPFWQGSARTIFAEGAERMRKDEGRSYNKFLRTLLAIQLDQLRAF 319
Cdd:PRK13700 240 PLDARCAAWDLWKECLTQPDFDNTANTLIPMGTKEDPFWQGSGRTIFAEAAYLMRNDPNRSYSKLVDTLLSIKIEKLRTY 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 320 LAGTPASTLVDGKIEKTAISIRSVLTNYVKAMRYLQGIDRPGrEKFTIREWMKGQADKSKNGWLFITSDEQNHESLKPLI 399
Cdd:PRK13700 320 LRNSPAANLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEHNG-EPFTIRDWMRGVREDQKNGWLFISSNADTHASLKPVI 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 400 SLWLSIAATSLLAMGPNRQRRVWFFYDELASLHKLSTLPRIISEARKFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNT 479
Cdd:PRK13700 399 SMWLSIAIRGLLAMGENRNRRVWFFCDELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVMNT 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 480 KFFFRSPSAQIAKFVEEDIGETRRLKFSEQTSFGHEQVRDGISFGKEEERVSIVSYSDVQSLNDLQCFVTLPGSYPVVKL 559
Cdd:PRK13700 479 RAFFRSPSHKIAEFAAGEIGEKEHLKASEQYSYGADPVRDGVSTGKDMERQTLVSYSDIQSLPDLTCYVTLPGPYPAVKL 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 560 TMKYDAMPKVADALLLRDVQTSLDKNIEDELVRRTEEERlSLDGLFTPVTPVPESA------------------------ 615
Cdd:PRK13700 559 SLKYQARPKVAPEFIPRDINPEMENRLSAVLAAREAEGR-QMASLFEPDVPEVASGedvtqaeqpqqpqqpqqpqqpqqp 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 616 -----------------SASSGGTERDI----EQDLPREMPPGLNGDGEVVDFAAYEAWEQGQHQT--RDMTRREEVNIN 672
Cdd:PRK13700 638 qqpvspvindkksdagvNVPAGGIEQELkmkpEEEMEQQLPPGISESGEVVDMAAYEAWQQENHPDiqQQMQRREEVNIN 717
|
730
....*....|....
gi 2243556099 673 --HATDKTHEIDGD 684
Cdd:PRK13700 718 vhRERGEDVEPGDD 731
|
|
| TraD_Ftype |
TIGR02759 |
type IV conjugative transfer system coupling protein TraD; The TraD protein performs an ... |
9-578 |
0e+00 |
|
type IV conjugative transfer system coupling protein TraD; The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Pssm-ID: 131806 Cd Length: 566 Bit Score: 690.29 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 9 TQGGQVAFMRLKMFLQINNLISYYVIMG-TVLFGLAVVLMRMsiQNLTNGIIYWFVRFMSPFTERMVSQPVYNIRYYEHT 87
Cdd:TIGR02759 2 TRGGQITFHNIRMFFQVTKTLFYWMFILfIILTGLILWFMAS--VNTFLGNIYYWEAQLFTLVGHIKTQEVFTPWFGKTY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 88 LQYSArQILSDNYTVYCGQLLKQELVIAGCASLLVAFLATLAVYWYLGRTGRQQSEDEIIGGRVLSeSPKDVARLLKKRG 167
Cdd:TIGR02759 80 TTYQA-QILTNPYVIRAYDQLWQALQKSALAALAISLVVFLLFMFFFIKRGEQQSKDHFIRGSQLS-SPKELIKKLKKSR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 168 EASDIRIDDLPL-KLDSEIQNFAMHGTVSTGKSTLMRKILKQLRDRGDLVIIYDKGCTFVEDFCDESRDEVLNALDSRCP 246
Cdd:TIGR02759 158 RASDIKIGGLPLiKFGSETQHILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKGCTFTSRFYDPSQDVILNPFDERCA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 247 NWDLWEECRTISELENASTTLIPASSGEDPFWQGSARTIFAEGAERMRKDEGRSYNKFLRTLLAIQLDQLRAFLAGTPAS 326
Cdd:TIGR02759 238 NWDVWRECKDKTDFENMAEALIPMHGDGDPFWVDSARTIFTSTAYKMRNDPKRSTSKLLDLLLTSELEELRDYLKGTESA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 327 TLVDGKIEKTAISIRSVLTNYVKAMRYLQGIDRPGREKFTIREWMKgqaDKSKNGWLFITSDEQNHESLKPLISLWLSIA 406
Cdd:TIGR02759 318 SLVSDKIEKTAISIKSVLATYLKSLRFLEGLDRKGREPFSIRDWIL---NEQKNGWLFISSNAQQHASLKPLISMWLSIA 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 407 ATSLLAMGPNRQRRVWFFYDELASLHKLSTLPRIISEARKFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNTKFFFRSP 486
Cdd:TIGR02759 395 SRGLLSLPPNDDRRIWFIMDELPSLHKLPDLDETIAEVRKFGGCYVLGIQSFAQLEKIYGQNGAATLFDLLNTRFFFRSP 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 487 SAQIAKFVEEDIGETRRLKFSEQTSFGHEQVRDGISFGKEEERVSIVSYSDVQSLNDLQCFVTLPGSYPVVKLTMKYDAM 566
Cdd:TIGR02759 475 SAKMAKIVSDDLGEQEIEESKENYSYGANSVRDGVSLGSQTITRPLVSYSDIQFLDDLQCYVRLPGNYPITKLKLKYDER 554
|
570
....*....|..
gi 2243556099 567 PKVADALLLRDV 578
Cdd:TIGR02759 555 PKICPPFIPRDI 566
|
|
| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
177-562 |
3.29e-118 |
|
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 358.92 E-value: 3.29e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 177 LPLKLDSEIQNFAMHGTVSTGKSTLMRKILKQLRDRGDLVIIYDKGCTFVEDFCDESRDEVLNALDSRCPNWDLWEECRT 256
Cdd:pfam10412 7 VPLPKRSETRHTLIIGTTGSGKTQALRGLLDQARARGDRAIIFDLTGAFTERFYDPGRDILLNPLDARSPAWSPFAECKT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 257 ISELENASTTLIPAS-SGEDPFWQGSARTIFAEGAERMRKDEGRSYNKFLRTLLAIQLDQLRAFLAGTPASTLVDGKIEK 335
Cdd:pfam10412 87 PADFAAIAAALIPEDgGGSDPFWALAARTVLVDTLRALQRTGRKTNAALLRALLTADLDELHELLAGTAAAPLTAPEAER 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 336 TAISIRSVLTNYVKAMRYLqgidRPGREKFTIREWMKGQAdksKNGWLFITSDEQNHESLKPLISLWLSIAATSLLAMGP 415
Cdd:pfam10412 167 TTASIRATLATNLRALRFL----APDGERFSIREWITEED---PGGWLFITYRADQRAALRPLLSCWLDLAIRALLSLPP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 416 NRQRRVWFFYDELASLHKLSTLPRIISEARKFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNTKFFFRSPSAQIAKFVE 495
Cdd:pfam10412 240 SRDRRLWFFLDELPALGRLPSLKDLLAEGRKFGGAVVLGLQSIAQLREIYGEDGAQTILSNCGTKLILRVSDGETAELCS 319
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2243556099 496 EDIG--ETRRLkfSEQTSFGHEQVRDGISFGKEEERVSIVSYSDVQSLNDLQCFVTLPGSYPVVKLTMK 562
Cdd:pfam10412 320 DLLGdrEVERM--DESLSYGANNSRDGVTLGRQRRVRPLVLPSEIMNLPRLHGYLKFPDGFPVARVTLP 386
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
187-580 |
5.54e-71 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 236.42 E-value: 5.54e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 187 NFAMHGTVSTGKST-LMRKILKQLRdRGDLVIIYDKGCTFVE---DFCDESRDEV--LNALD-SRCPNWDLWEECRTISE 259
Cdd:COG3505 1 HVLVIGPTGSGKTVgLVIPNLTQLA-RGESVVVTDPKGDLAEltaGFRRRAGYDVyvFDPFDpERSHRWNPLDEIRDPAD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 260 LENASTTLIPA---SSGEDPFWQGSARTIFAEGAERMRKDEGRSYNKfLRTLLAIQLDQLRAFLAGTP-------ASTLV 329
Cdd:COG3505 80 AQELAEALIPAlggGGGGDPFWREAARALLAALILALAEEGRRTLAD-VYRLLSEPEEELRELLEALPesphppvADTLA 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 330 D--GKIEKTAISIRSVLTNYVKAMRYLQGIDRPGREKFTIREWMKgqadksKNGWLFITSDEQNHESLKPLISLWLSIAA 407
Cdd:COG3505 159 AflNAAEKTRSSVLSTLASALELLSDPEVAALTSGSDFDLRDLIR------EKGTLYLVLPPDDLSTLAPLLRLLLSQLI 232
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 408 TSLLAMGPNR---QRRVWFFYDELASLHKLSTLPRIISEARKFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNTKFFFR 484
Cdd:COG3505 233 RALLRRAERSgrlPRPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIYGEEGAETILGNCGTKIFLG 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 485 SPSAQIAKFVEEDIGETRRLKFSEQTSFGHEqvrdgiSFGKEEERVSIVSYSDVQSLNDLQCFVTLPGSYPVVKLTMKYD 564
Cdd:COG3505 313 VNDPETAEYLSELLGKRTVERRSESRSRGSR------SRSRSEQERPLLTPDELRRLPDGEAIVLVRGGPPIRAKKIRYY 386
|
410
....*....|....*.
gi 2243556099 565 AMPKVADALLLRDVQT 580
Cdd:COG3505 387 KDPEPAPAFEPRDAEA 402
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
366-485 |
3.18e-31 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 118.86 E-value: 3.18e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 366 TIREWMKGQA----DKSKNGWLFITSDEQNHESLKPLISLWLSIAATSLLAMGPNR-QRRVWFFYDELASLHKLSTLPRI 440
Cdd:cd01127 20 LLDQAARGGSviitDPKGELFLVIPDRDDSFAALRALFFNQLFRALTELASLSPGRlPRRVWFILDEFANLGRIPNLPNL 99
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2243556099 441 ISEARKFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNTKFFFRS 485
Cdd:cd01127 100 LATGRKRGISVVLILQSLAQLEAVYGKDGAQTILGNCNTKLYLGT 144
|
|
| TraG-D_C |
pfam12696 |
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as ... |
420-541 |
2.65e-18 |
|
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.
Pssm-ID: 432726 [Multi-domain] Cd Length: 125 Bit Score: 81.16 E-value: 2.65e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 420 RVWFFYDELASLHKLSTLPRIISEARKFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNTKFFFRSPSAQIAKFVEEDIG 499
Cdd:pfam12696 1 PVLFVLDEFANLGKIPDLEKLISTGRSRGISLMLILQSIAQLEELYGKDGAETILGNCNTKVFLGGGDEETAKYLSKLLG 80
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2243556099 500 ETRRLKFSEQTSFGHEQVRDGI-SFGKEEERVSIVSYSDVQSL 541
Cdd:pfam12696 81 KYTVVSTTTSSSSSGSGGSGSSsSSSSQLVGRPLLTPDELRRL 123
|
|
| TraD_N |
pfam12615 |
F sex factor protein N terminal; This domain family is found in bacteria, and is typically ... |
34-124 |
2.62e-11 |
|
F sex factor protein N terminal; This domain family is found in bacteria, and is typically between 96 and 107 amino acids in length. The family is found in association with pfam10412. TraD is a cytoplasmic membrane protein with possible DNA binding domains. It is part of the bacterial F sex factor complex.
Pssm-ID: 432671 [Multi-domain] Cd Length: 97 Bit Score: 60.53 E-value: 2.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 34 IMGTVLFGLaVVLMRMSIQNLTNGIIYWFVRFMSPFTERMVSQPVYNIRYYEHTLQYSARQILSDNYTVYCGQLLKQELV 113
Cdd:pfam12615 4 ILFLVLTGL-WLWCRLSQQTFVNGLYYWWCTTYGQMKDLIGEQHVYTIWYYGQTYGINFYQILFDKYTIWNAEQFWEFLI 82
|
90
....*....|.
gi 2243556099 114 IAGCASLLVAF 124
Cdd:pfam12615 83 LSALAALVICF 93
|
|
| T4SS-DNA_transf |
pfam02534 |
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and ... |
198-513 |
9.44e-11 |
|
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.
Pssm-ID: 367119 [Multi-domain] Cd Length: 468 Bit Score: 64.73 E-value: 9.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 198 KSTLMRKILKQLRDRGDLVIIYDkgctfvedFCDESRDEVLNALDsrcpnW-DLWEECRTISELENASTTLIPASSGEDP 276
Cdd:pfam02534 79 KGELWELTSGIREKQGRKVFVLE--------PFNPKTSDRYNPLD-----YiDRGSEQETEDILKVASLIMPGKGGGRDD 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 277 FWQGSARTIF-AEGAERMRKDEGRSYNKFLRTLLAIQLDQ------LRAFLAGT-------PASTLVDGKIEKTAISIRS 342
Cdd:pfam02534 146 FFNNTARQLLvALIALVLRSKPTRTIGQTLRFVRNMLSEPnlienkELAVLLNEldgshhdRVGDNLRFYVNKTDETRSS 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 343 VLTNYVKAMR--YLQGIDR-PGREKFTIREWMKGQADkskngwLFITSDEQNHESLKPLISLwLSIAATSLLAMG-PN-- 416
Cdd:pfam02534 226 VIGTAVSELAlyADPEVRNaTSGSDFDLRDLRRDKTS------VYVILNPKDLTVVSPLLRV-FFQMVVELLYLKlPNgd 298
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 417 -RQRRVWFFYDELASLHKLSTLPRIISEARKFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNTKFFFRSPSA-QIAKFV 494
Cdd:pfam02534 299 gRPKEVLFLLDEFPSLGKLEILEEALATIRGYGIRLTTICQSISQLKETYGGEGAKSILSNHAVVICFAASNDeETAKYI 378
|
330
....*....|....*....
gi 2243556099 495 EEDIGETRRLKFSEQTSFG 513
Cdd:pfam02534 379 SKLLGKTTVEVESSSKSTD 397
|
|
| VirB4 |
COG3451 |
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ... |
187-509 |
4.11e-08 |
|
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain] Cd Length: 546 Bit Score: 56.49 E-value: 4.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 187 NFAMHGTVSTGKSTLMRKILKQLRDRGDLVIIYDKGCTFvEDFCDesrdevlnALDSrcpnwdlweecrTISELENASTT 266
Cdd:COG3451 206 NTLILGPSGSGKSFLLKLLLLQLLRYGARIVIFDPGGSY-EILVR--------ALGG------------TYIDLSPGSPT 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 267 LIpassgeDPFwqgsarTIFAEGAERmrkdegrsynKFLRTLLAIqldqlrafLAGTPASTLvdGKIEKTAIS--IRSVL 344
Cdd:COG3451 265 GL------NPF------DLEDTEEKR----------DFLLELLEL--------LLGREGEPL--TPEERAAIDraVRALY 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 345 TNYVKAMR--------YLQGIDRPGREKFTIREWMKGQADksknGWLF------------IT----SDEQNHESLKPLIS 400
Cdd:COG3451 313 RRADPEERttlsdlyeLLKEQPEAKDLAARLEPYTKGGSY----GWLFdgptnldlsdarFVvfdlTELLDNPELRPPVL 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 401 LWLsIAATSLLAMGPNRQRRVWFFYDELaslHKL-------STLPRIISEARKFGGCFALGFQNFAQmenIYGPKGAAEI 473
Cdd:COG3451 389 LYL-LHRIWNRLRKNNDGRPTLIVIDEA---WLLldnpafaEFLEEWLKTLRKYNGAVIFATQSVED---FLSSPIAEAI 461
|
330 340 350
....*....|....*....|....*....|....*.
gi 2243556099 474 FDLLNTKFFFRSPSAQIAKFVEedigetrRLKFSEQ 509
Cdd:COG3451 462 IENSATKILLPQPKADIEDYAE-------LLGLSER 490
|
|
| HerA |
COG0433 |
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ... |
147-503 |
2.04e-07 |
|
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain] Cd Length: 388 Bit Score: 53.84 E-value: 2.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 147 IGGRVLSESPKDVARLLKKRGEAS--DIRIDDLPLKLD-SEIQNfaMHGTVS----TGKSTLMRKILKQLRDRGDLVIIY 219
Cdd:COG0433 4 PGSPVYLADDEELEELLGDGGGILigKLLSPGVPVYLDlDKLLN--RHILILgatgSGKSNTLQVLLEELSRAGVPVLVF 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 220 D-KG--CTFVEDFCDESRDEVLNALDSRCPNWDLWEECRTISELENastTLIPASSGEDPfwqgsARTIFAEGAERMRKD 296
Cdd:COG0433 82 DpHGeySGLAEPGAERADVGVFDPGAGRPLPINPWDLFATASELGP---LLLSRLDLNDT-----QRGVLREALRLADDK 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 297 EGRSYNkflrtllaiqLDQLRAFLAGTPASTLVDGKIEKTaiSIRSVLtNYVKAMRYLQGIDRPgrEKFTIREWMKgqad 376
Cdd:COG0433 154 GLLLLD----------LKDLIALLEEGEELGEEYGNVSAA--SAGALL-RRLESLESADGLFGE--PGLDLEDLLR---- 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 377 ksKNGWLFITSDEQNHESLKPLISLWLSIAATSLLAMGP---NRQRRVWFFYDEL------ASLHKLSTLPRIISEARKF 447
Cdd:COG0433 215 --TDGRVTVIDLSGLPEELQSTFVLWLLRELFEARPEVGdadDRKLPLVLVIDEAhllapaAPSALLEILERIAREGRKF 292
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2243556099 448 GgcFALGF--QNFAQMENiygpkgaaEIFDLLNTKFFFR--SPSAQ--IAKFVEEDIGETRR 503
Cdd:COG0433 293 G--VGLILatQRPSDIDE--------DVLSQLGTQIILRlfNPRDQkaVKAAAETLSEDLLE 344
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
191-324 |
3.05e-04 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 41.17 E-value: 3.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 191 HGTVSTGKSTLMRKILKQLRDRGDLVIIYD--KGCTfVEDFCdesrDEVLNALDSRCPNWDLWEECRtiSELENASTTli 268
Cdd:pfam13401 11 TGESGTGKTTLLRRLLEQLPEVRDSVVFVDlpSGTS-PKDLL----RALLRALGLPLSGRLSKEELL--AALQQLLLA-- 81
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2243556099 269 passgedpfwQGSARTIFAEGAERMRKDegrSYNkFLRTLLAIQLDQLRAFLAGTP 324
Cdd:pfam13401 82 ----------LAVAVVLIIDEAQHLSLE---ALE-ELRDLLNLSSKLLQLILVGTP 123
|
|
| PRK13822 |
PRK13822 |
conjugal transfer coupling protein TraG; Provisional |
418-501 |
2.68e-03 |
|
conjugal transfer coupling protein TraG; Provisional
Pssm-ID: 237522 [Multi-domain] Cd Length: 641 Bit Score: 41.10 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2243556099 418 QRRVWFFYDELASLHKLstlpRIISEAR----KFGGCFALGFQNFAQMENIYGPKGAAEIFDLLNtkffFRSPSA----Q 489
Cdd:PRK13822 476 KGRALFLLDEVARLGYM----RILETARdagrKYGITLMLIYQSIGQLREHFGGRGATSWFESAS----WISFAAikdlD 547
|
90
....*....|..
gi 2243556099 490 IAKFVEEDIGET 501
Cdd:PRK13822 548 TADYISERCGEM 559
|
|
| |
