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Conserved domains on  [gi|2244956496|emb|CAH4155209|]
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hypothetical protein AI2755V2_5206 (plasmid) [Klebsiella pneumoniae]

Protein Classification

tRNA1(Val) (adenine(37)-N6)-methyltransferase( domain architecture ID 1903359)

tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase is a class I SAM-dependent methyltransferase that specifically methylates the adenine in position 37 of tRNA(1)(Val)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3963 super family cl42483
Phosphatidylethanolamine N-methyltransferase [Lipid transport and metabolism];
33-145 5.75e-13

Phosphatidylethanolamine N-methyltransferase [Lipid transport and metabolism];


The actual alignment was detected with superfamily member COG3963:

Pssm-ID: 478234  Cd Length: 193  Bit Score: 64.08  E-value: 5.75e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  33 VTPSPE--CRRLVELADVRETDRILEPSAGTGAILQAIRDA-VPRAKCDAVELHAGLARHLQAHFPEVRIWCGD------ 103
Cdd:COG3963    26 IAPSSRalARAMASEVDWSGAGPVVELGPGTGVFTRAILARgVPDARLLAVEINPEFAEHLRRRFPRVTVVNGDaedlae 105

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2244956496 104 FLEYHPERRYTRII-----MNPPFHRGDDIrhIRRALTLLEPGGILT 145
Cdd:COG3963   106 LLAEHGIGKVDAVVsglplLSFPPELRRAI--LDAAFRVLAPGGVFV 150
 
Name Accession Description Interval E-value
COG3963 COG3963
Phosphatidylethanolamine N-methyltransferase [Lipid transport and metabolism];
33-145 5.75e-13

Phosphatidylethanolamine N-methyltransferase [Lipid transport and metabolism];


Pssm-ID: 443163  Cd Length: 193  Bit Score: 64.08  E-value: 5.75e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  33 VTPSPE--CRRLVELADVRETDRILEPSAGTGAILQAIRDA-VPRAKCDAVELHAGLARHLQAHFPEVRIWCGD------ 103
Cdd:COG3963    26 IAPSSRalARAMASEVDWSGAGPVVELGPGTGVFTRAILARgVPDARLLAVEINPEFAEHLRRRFPRVTVVNGDaedlae 105

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2244956496 104 FLEYHPERRYTRII-----MNPPFHRGDDIrhIRRALTLLEPGGILT 145
Cdd:COG3963   106 LLAEHGIGKVDAVVsglplLSFPPELRRAI--LDAAFRVLAPGGVFV 150
rADc smart00650
Ribosomal RNA adenine dimethylases;
39-135 9.10e-10

Ribosomal RNA adenine dimethylases;


Pssm-ID: 128898  Cd Length: 169  Bit Score: 54.82  E-value: 9.10e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496   39 CRRLVELADVRETDRILEPSAGTGAILQAIrdaVPRAK-CDAVELHAGLARHLQAHFPE---VRIWCGDFLEYH-PERRY 113
Cdd:smart00650   2 IDKIVRAANLRPGDTVLEIGPGKGALTEEL---LERAKrVTAIEIDPRLAPRLREKFAAadnLTVIHGDALKFDlPKLQP 78

                           90       100
                   ....*....|....*....|..
gi 2244956496  114 TRIIMNPPFHRGDDIrhIRRAL 135
Cdd:smart00650  79 YKVVGNLPYNISTPI--LFKLL 98
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 53-144 7.85e-09

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 51.28  E-value: 7.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  53 RILEPSAGTGAILQAIRDAvPRAKCDAVELHAGLARHLQ-----AHFPEVRIWCGDFLEYH--PERRYTRIIMNPPFHRG 125
Cdd:cd02440     1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARkaaaaLLADNVEVLKGDAEELPpeADESFDVIISDPPLHHL 79

                          90       100
                  ....*....|....*....|.
gi 2244956496 126 DDIRH--IRRALTLLEPGGIL 144
Cdd:cd02440    80 VEDLArfLEEARRLLKPGGVL 100
MTS pfam05175
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ...
 42-144 2.85e-08

Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.


Pssm-ID: 428349 [Multi-domain]  Cd Length: 170  Bit Score: 51.05  E-value: 2.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  42 LVELADVRETDRILEPSAGTGAILQAIRDAVPRAKCDAVELHA---GLAR-HLQAH-FPEVRIWCGDFLEYHPERRYTRI 116
Cdd:pfam05175  23 LLEHLPKDLSGKVLDLGCGAGVLGAALAKESPDAELTMVDINAralESAReNLAANgLENGEVVASDVYSGVEDGKFDLI 102

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2244956496 117 IMNPPFHRGDDI------RHIRRALTLLEPGGIL 144
Cdd:pfam05175 103 ISNPPFHAGLATtynvaqRFIADAKRHLRPGGEL 136
ksgA PRK14896
16S ribosomal RNA methyltransferase A;
41-106 5.37e-03

16S ribosomal RNA methyltransferase A;


Pssm-ID: 237852 [Multi-domain]  Cd Length: 258  Bit Score: 36.42  E-value: 5.37e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2244956496  41 RLVELADVRETDRILEPSAGTGAILQAIRDavpRAKCD-AVELHAGLARHLQAHFPEVR----IWcGDFLE 106
Cdd:PRK14896   20 RIVEYAEDTDGDPVLEIGPGKGALTDELAK---RAKKVyAIELDPRLAEFLRDDEIAAGnveiIE-GDALK 86
 
Name Accession Description Interval E-value
COG3963 COG3963
Phosphatidylethanolamine N-methyltransferase [Lipid transport and metabolism];
33-145 5.75e-13

Phosphatidylethanolamine N-methyltransferase [Lipid transport and metabolism];


Pssm-ID: 443163  Cd Length: 193  Bit Score: 64.08  E-value: 5.75e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  33 VTPSPE--CRRLVELADVRETDRILEPSAGTGAILQAIRDA-VPRAKCDAVELHAGLARHLQAHFPEVRIWCGD------ 103
Cdd:COG3963    26 IAPSSRalARAMASEVDWSGAGPVVELGPGTGVFTRAILARgVPDARLLAVEINPEFAEHLRRRFPRVTVVNGDaedlae 105

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2244956496 104 FLEYHPERRYTRII-----MNPPFHRGDDIrhIRRALTLLEPGGILT 145
Cdd:COG3963   106 LLAEHGIGKVDAVVsglplLSFPPELRRAI--LDAAFRVLAPGGVFV 150
Tam COG4106
Trans-aconitate methyltransferase [Energy production and conversion];
53-144 3.69e-12

Trans-aconitate methyltransferase [Energy production and conversion];


Pssm-ID: 443282 [Multi-domain]  Cd Length: 100  Bit Score: 59.84  E-value: 3.69e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  53 RILEPSAGTGAILQAIRDAVPRAKCDAVELHAGLARHLQAHFPEVRIWCGDFLEYHPERRYTRIIMNPPFHRGDDIRH-I 131
Cdd:COG4106     4 RVLDLGCGTGRLTALLAERFPGARVTGVDLSPEMLARARARLPNVRFVVADLRDLDPPEPFDLVVSNAALHWLPDHAAlL 83

                          90
                  ....*....|...
gi 2244956496 132 RRALTLLEPGGIL 144
Cdd:COG4106    84 ARLAAALAPGGVL 96
HsdM COG0286
Type I restriction-modification system, DNA methylase subunit [Defense mechanisms];
32-183 7.92e-11

Type I restriction-modification system, DNA methylase subunit [Defense mechanisms];


Pssm-ID: 440055 [Multi-domain]  Cd Length: 243  Bit Score: 59.05  E-value: 7.92e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  32 FVTPSPECRRLVELADVRETDRILEPSAGTGAIL-QAIRDAVPRAKCDAVELH----------AGLAR-HLQAH-FPEVR 98
Cdd:COG0286    25 FYTPREVVRLMVELLDPKPGETVYDPACGSGGFLvEAAEYLKEHGGDERKKLSlygqeinpttYRLAKmNLLLHgIGDPN 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  99 IWCGDFL--EYHPERRYTRIIMNPPF---HRGDDIRH--------------------IRRALTLLEPGGILTGICLDGP- 152
Cdd:COG0286   105 IELGDTLsnDGDELEKFDVVLANPPFggkWKKEELKDdllgrfgyglppksnadllfLQHILSLLKPGGRAAVVLPDGVl 184

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2244956496 153 --------RQQ----KALESLADvwepLPRGTFTYTQVATAIL 183
Cdd:COG0286   185 frgaekeiRKKllenDLLEAIIG----LPSNLFYNTGIPTCIL 223
COG2263 COG2263
Predicted RNA methylase [General function prediction only];
32-135 5.48e-10

Predicted RNA methylase [General function prediction only];


Pssm-ID: 441864 [Multi-domain]  Cd Length: 199  Bit Score: 56.07  E-value: 5.48e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  32 FVTPSPECRRLVELADVR---ETDRILEPSAGTG--AILQAIRDAvprAKCDAVEL---HAGLARHLQA-HFPEVRIWCG 102
Cdd:COG2263    24 YPTPAELAAELLHLAYLRgdiEGKTVLDLGCGTGmlAIGAALLGA---KKVVGVDIdpeALEIARENAErLGVRVDFIRA 100

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2244956496 103 DFLEYHPERRYTRIIMNPPF---HRGDDIRHIRRAL 135
Cdd:COG2263   101 DVTRIPLGGSVDTVVMNPPFgaqRRHADRPFLEKAL 136
rADc smart00650
Ribosomal RNA adenine dimethylases;
39-135 9.10e-10

Ribosomal RNA adenine dimethylases;


Pssm-ID: 128898  Cd Length: 169  Bit Score: 54.82  E-value: 9.10e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496   39 CRRLVELADVRETDRILEPSAGTGAILQAIrdaVPRAK-CDAVELHAGLARHLQAHFPE---VRIWCGDFLEYH-PERRY 113
Cdd:smart00650   2 IDKIVRAANLRPGDTVLEIGPGKGALTEEL---LERAKrVTAIEIDPRLAPRLREKFAAadnLTVIHGDALKFDlPKLQP 78

                           90       100
                   ....*....|....*....|..
gi 2244956496  114 TRIIMNPPFHRGDDIrhIRRAL 135
Cdd:smart00650  79 YKVVGNLPYNISTPI--LFKLL 98
RsmC COG2813
16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA ...
 40-144 1.69e-09

16S rRNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]; 16S rRNA G1207 methylase RsmC is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 442062 [Multi-domain]  Cd Length: 191  Bit Score: 54.43  E-value: 1.69e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  40 RRLVELADVRETDRILEPSAGTGAILQAIRDAVPRAKCDAVELHA---GLARH-LQAHFPE-VRIWCGDFLEYHPERRYT 114
Cdd:COG2813    39 RLLLEHLPEPLGGRVLDLGCGYGVIGLALAKRNPEARVTLVDVNAravELARAnAAANGLEnVEVLWSDGLSGVPDGSFD 118

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2244956496 115 RIIMNPPFHRG----DDIRH--IRRALTLLEPGGIL 144
Cdd:COG2813   119 LILSNPPFHAGravdKEVAHalIADAARHLRPGGEL 154
TrmN6 COG4123
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ...
 45-145 5.78e-09

tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 443299 [Multi-domain]  Cd Length: 238  Bit Score: 53.61  E-value: 5.78e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  45 LADVRETDRILEPSAGTGAI--LQAIRdaVPRAKCDAVELH---AGLARH--LQAHFPE-VRIWCGDFLEYHPE---RRY 113
Cdd:COG4123    32 FAPVKKGGRVLDLGTGTGVIalMLAQR--SPGARITGVEIQpeaAELARRnvALNGLEDrITVIHGDLKEFAAElppGSF 109

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2244956496 114 TRIIMNPPFHRGDDI-----------RH---------IRRALTLLEPGGILT 145
Cdd:COG4123   110 DLVVSNPPYFKAGSGrkspdearaiaRHedaltledlIRAAARLLKPGGRFA 161
AdoMet_MTases cd02440
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 53-144 7.85e-09

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


Pssm-ID: 100107 [Multi-domain]  Cd Length: 107  Bit Score: 51.28  E-value: 7.85e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  53 RILEPSAGTGAILQAIRDAvPRAKCDAVELHAGLARHLQ-----AHFPEVRIWCGDFLEYH--PERRYTRIIMNPPFHRG 125
Cdd:cd02440     1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARkaaaaLLADNVEVLKGDAEELPpeADESFDVIISDPPLHHL 79

                          90       100
                  ....*....|....*....|.
gi 2244956496 126 DDIRH--IRRALTLLEPGGIL 144
Cdd:cd02440    80 VEDLArfLEEARRLLKPGGVL 100
MTS pfam05175
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ...
 42-144 2.85e-08

Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.


Pssm-ID: 428349 [Multi-domain]  Cd Length: 170  Bit Score: 51.05  E-value: 2.85e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  42 LVELADVRETDRILEPSAGTGAILQAIRDAVPRAKCDAVELHA---GLAR-HLQAH-FPEVRIWCGDFLEYHPERRYTRI 116
Cdd:pfam05175  23 LLEHLPKDLSGKVLDLGCGAGVLGAALAKESPDAELTMVDINAralESAReNLAANgLENGEVVASDVYSGVEDGKFDLI 102

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2244956496 117 IMNPPFHRGDDI------RHIRRALTLLEPGGIL 144
Cdd:pfam05175 103 ISNPPFHAGLATtynvaqRFIADAKRHLRPGGEL 136
RsmA COG0030
16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase ...
 39-123 3.16e-07

16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) [Translation, ribosomal structure and biogenesis]; 16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 439801 [Multi-domain]  Cd Length: 270  Bit Score: 48.97  E-value: 3.16e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  39 CRRLVELADVRETDRILEPSAGTGAILQAIRDAVprAKCDAVELHAGLARHLQAHFPE---VRIWCGDFLEY----HPER 111
Cdd:COG0030    26 IRRIVDAAGITPGDTVLEIGPGLGALTRALLERA--ARVTAVEIDRRLAAILRETFAAypnLTVIEGDALKVdlpaLAAG 103

                          90
                  ....*....|..
gi 2244956496 112 RYTRIIMNPPFH 123
Cdd:COG0030   104 EPLKVVGNLPYN 115
UbiE COG2226
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ...
 40-144 1.37e-04

Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 441828 [Multi-domain]  Cd Length: 143  Bit Score: 40.36  E-value: 1.37e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  40 RRLVELADVRETDRILEPSAGTGAILQAIRDAVprAKCDAVELHAGLARHLQAHFPE----VRIWCGDFLEYH-PERRYT 114
Cdd:COG2226    12 EALLAALGLRPGARVLDLGCGTGRLALALAERG--ARVTGVDISPEMLELARERAAEaglnVEFVVGDAEDLPfPDGSFD 89

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2244956496 115 RIIMNPPFHRGDD----IRHIRRALTllePGGIL 144
Cdd:COG2226    90 LVISSFVLHHLPDperaLAEIARVLK---PGGRL 120
SpeE COG0421
Spermidine synthase (polyamine aminopropyltransferase) [Amino acid transport and metabolism];
60-145 1.33e-03

Spermidine synthase (polyamine aminopropyltransferase) [Amino acid transport and metabolism];


Pssm-ID: 440190 [Multi-domain]  Cd Length: 195  Bit Score: 37.89  E-value: 1.33e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  60 GTGAILQAIRDAVPRAKCDAVELHAGLARHLQAHFPE---------VRIWCGDFLEY--HPERRYTRIIMNPPFHRG--- 125
Cdd:COG0421    47 GDGGLARELLKHPPVERVDVVEIDPEVVELAREYFPLlapafddprLRVVIGDGRAFlrEAEESYDVIIVDLTDPVGpae 126

                          90       100
                  ....*....|....*....|....*
gi 2244956496 126 -----DDIRHIRRALTllePGGILT 145
Cdd:COG0421   127 glftrEFYEDCRRALK---PGGVLV 148
COG4976 COG4976
Predicted methyltransferase, contains TPR repeat [General function prediction only];
34-144 2.58e-03

Predicted methyltransferase, contains TPR repeat [General function prediction only];


Pssm-ID: 444001 [Multi-domain]  Cd Length: 181  Bit Score: 36.90  E-value: 2.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  34 TPSPECRRLVELADVRETDRILEPSAGTGAILQAIRDAVPRakCDAVELHAGLARHLQAHFPEVRIWCGDFLE-YHPERR 112
Cdd:COG4976    30 APALLAEELLARLPPGPFGRVLDLGCGTGLLGEALRPRGYR--LTGVDLSEEMLAKAREKGVYDRLLVADLADlAEPDGR 107

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2244956496 113 YTRIIMNPPFHRGDDI-RHIRRALTLLEPGGIL 144
Cdd:COG4976   108 FDLIVAADVLTYLGDLaAVFAGVARALKPGGLF 140
Cfa COG2230
Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport ...
 40-144 3.65e-03

Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism];


Pssm-ID: 441831 [Multi-domain]  Cd Length: 158  Bit Score: 36.45  E-value: 3.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2244956496  40 RRLVELADVRETDRILEPSAGTGA-ILQAIRDAvpRAKCDAVELHAGLARHLQAHFPE------VRIWCGDFLEYHPERR 112
Cdd:COG2230    41 DLILRKLGLKPGMRVLDIGCGWGGlALYLARRY--GVRVTGVTLSPEQLEYARERAAEagladrVEVRLADYRDLPADGQ 118

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2244956496 113 YTRIIMNPPF-HRGDD--IRHIRRALTLLEPGGIL 144
Cdd:COG2230   119 FDAIVSIGMFeHVGPEnyPAYFAKVARLLKPGGRL 153
ksgA PRK14896
16S ribosomal RNA methyltransferase A;
41-106 5.37e-03

16S ribosomal RNA methyltransferase A;


Pssm-ID: 237852 [Multi-domain]  Cd Length: 258  Bit Score: 36.42  E-value: 5.37e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2244956496  41 RLVELADVRETDRILEPSAGTGAILQAIRDavpRAKCD-AVELHAGLARHLQAHFPEVR----IWcGDFLE 106
Cdd:PRK14896   20 RIVEYAEDTDGDPVLEIGPGKGALTDELAK---RAKKVyAIELDPRLAEFLRDDEIAAGnveiIE-GDALK 86
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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