|
Name |
Accession |
Description |
Interval |
E-value |
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
4-377 |
0e+00 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 675.37 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 4 FNFGPTLTPQTLERFLVHCSNNEVSDILLQGGDKIWVERHGRQLPMTSYPLDNLELERTVDKVFGQEIKGTLKSAAVVNT 83
Cdd:TIGR02525 1 FNFGPGLTADTLRRFFVHCSRHEVSDIHLQGGSPIVVERHGRQVPASSFPLDNLELERLVDEVFGPEIKPTVKSGAPVDR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 84 AIQLRGDEAGTIGLGRGETRRFRANFTQADIYKTEAAMSLTLRVLNEVIPQLKQMGIEPDLFNSLLPAAGLGLICGETGS 163
Cdd:TIGR02525 81 AIQLRGDENGRYGLGRGERVRFRCNFIQATIGKLETAISLTLRVIPSDIPDLKQMGIEPDLFNSLLPAAGLGLICGETGS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 164 GKSTLMASIFQYCGETYQDRKIITVEDPIEYRLGSRDWIAPaPAQSQIGRDIDSFHNFITLSgLRRSPKIMGVGELLNRL 243
Cdd:TIGR02525 161 GKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLP-PAQSQIGRDVDSFANGIRLA-LRRAPKIIGVGEIRDLE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 244 SFEAAVLAGKSGHFCLGTLHVKTVGEAISRSLQNYPPEMREAAAFDLLSILSYIIVQRLLKTKDGRRKAVREYLVIDNSL 323
Cdd:TIGR02525 239 TFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQMYPPEMREAAAFDLLSILQYIIVQRLLRTTDGKRQAVREYIVFDDSL 318
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2241785837 324 RRKLYDVDYSKWGRYIDDLLIAENRSLIQNAWAMHQEGLIDEAEVIEVAGYMDY 377
Cdd:TIGR02525 319 RRKLYDVDYSKWGRYIDDILRAEQRRIADQAWAMHQEGRIDEREAAEVIGAMEF 372
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
11-372 |
2.96e-83 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 257.33 E-value: 2.96e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 11 TPQTLERFLVHCSNNEVSDILLQGGDKIWVERHGRQLPMTSYPLDNLELERTVDKVFGQEIKGTLKSAAVVNTAIQLRGD 90
Cdd:COG2805 1 MAMDLDELLKLAVEQGASDLHLTVGSPPMLRIDGELVPLDDPPLTPEDLEALLKEILTEEQRERLEEEGELDFSYSLPGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 91 EagtiglgrgetrRFRANftqadIYKTEAAMSLTLRVLNEVIPQLKQMGIEPDLFNSLLPAAGLGLICGETGSGKSTLMA 170
Cdd:COG2805 81 G------------RFRVN-----IFRQRGGVAAVLRLIPSEIPTLEELGLPPVLKELAELPRGLVLVTGPTGSGKSTTLA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 171 SIFQYCGETyQDRKIITVEDPIEYRLGSRDWIapaPAQSQIGRDIDSFHNFItLSGLRRSPKIMGVGELLNRLSFEAAVL 250
Cdd:COG2805 144 AMIDYINET-RAKHIITIEDPIEFVHKHKKSL---INQREVGRDTPSFANAL-RAALREDPDVILVGEMRDLETIEAALT 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 251 AGKSGHFCLGTLHVKTVGEAISRSLQNYPPEMREAAAFDLLSILSYIIVQRLLKTKDGR-RKAVREYLVIDNSLRRKLYD 329
Cdd:COG2805 219 AAETGHLVFATLHTNSAAQTIDRIIDVFPPEEQAQIRSQLAESLRGVISQRLLPRADGGgRVAAREILVNTPAVRNLIRE 298
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2241785837 330 VDYSKWGRYIDDLLIAENRSLIQNAWAMHQEGLIDEAEVIEVA 372
Cdd:COG2805 299 GKTHQIPSLIQTGKKLGMQTMDQSLAELVKEGLITEETALAYA 341
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
142-320 |
7.35e-78 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 237.66 E-value: 7.35e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 142 PDLFNSLLPAAGLGLICGETGSGKSTLMASIFQYCGETYQ-DRKIITVEDPIEYRLGSRDWIAPAPAQSQIGRDIDSFHN 220
Cdd:cd19516 1 PDLVEALFPREGLVYVAGATGSGKSTLLAAIYRYILENDPpDRKIITYEDPIEFVYDGIKSKHSIIVQSQIPRHFKSFAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 221 FITlSGLRRSPKIMGVGELLNRLSFEAAVLAGKSGHFCLGTLHVKTVGEAISRSLQNYPPEMREAAAFDLLSILSYIIVQ 300
Cdd:cd19516 81 AVR-EALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLFPPEERDAAAYDLLSTLRFIIVQ 159
|
170 180
....*....|....*....|
gi 2241785837 301 RLLKTKDGRRKAVREYLVID 320
Cdd:cd19516 160 RLVRTTDGKRVAVREYLVFD 179
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
122-302 |
2.92e-20 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 89.27 E-value: 2.92e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 122 SLTLRVLNEV-----IPQLKQMGIEPDLFNSLLPAA-GLGLICGETGSGKSTLMASIFQYCGETyqDRKIITVEDPIEYR 195
Cdd:pfam00437 94 KLVIRLLDPSnvalsLDELGMTGAQDEALLEFLRQPrGNILVTGPTGSGKTTTLYAALGELNTR--DENIVTVEDPVEIQ 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 196 LgsrdwiaPAPAQSQIGRDID-SFHNFITlSGLRRSPKIMGVGELLNRLSFEAAVLAGKSGHFCLGTLHVKTVGEAISRs 274
Cdd:pfam00437 172 L-------EGINQVQLNARAGvTFADLLR-AILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGALTR- 242
|
170 180
....*....|....*....|....*...
gi 2241785837 275 LQNYPPEMreaaaFDLLSILSYIIVQRL 302
Cdd:pfam00437 243 LQDMGVPP-----FELASSLLLVIAQRL 265
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
125-302 |
8.33e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 63.41 E-value: 8.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 125 LRVLNEViPQ---LKQMGIEP---DLFNSLLPAA-GLGLICGETGSGKSTLMASIFQYCGETyqDRKIITVEDPIEYRLg 197
Cdd:PRK10436 185 LRLLQQV-QQaldLETLGMTPaqlAQFRQALQQPqGLILVTGPTGSGKTVTLYSALQTLNTA--QINICSVEDPVEIPL- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 198 srDWIAPAPAQSQIGRDidsFHNFI-TLsgLRRSPKIMGVGELLNRLSFEAAVLAGKSGHFCLGTLHVKTVGEAISRsLQ 276
Cdd:PRK10436 261 --AGINQTQIHPKAGLT---FQRVLrAL--LRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTSETLVR-LQ 332
|
170 180
....*....|....*....|....*...
gi 2241785837 277 NY--PPEMreaaafdLLSILSYIIVQRL 302
Cdd:PRK10436 333 QMgiARWM-------LASALKLVIAQRL 353
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
156-194 |
7.06e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 36.97 E-value: 7.06e-03
10 20 30
....*....|....*....|....*....|....*....
gi 2241785837 156 LICGETGSGKSTLMASIFQYCGETYQDRKIITVEDPIEY 194
Cdd:smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE 44
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
4-377 |
0e+00 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 675.37 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 4 FNFGPTLTPQTLERFLVHCSNNEVSDILLQGGDKIWVERHGRQLPMTSYPLDNLELERTVDKVFGQEIKGTLKSAAVVNT 83
Cdd:TIGR02525 1 FNFGPGLTADTLRRFFVHCSRHEVSDIHLQGGSPIVVERHGRQVPASSFPLDNLELERLVDEVFGPEIKPTVKSGAPVDR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 84 AIQLRGDEAGTIGLGRGETRRFRANFTQADIYKTEAAMSLTLRVLNEVIPQLKQMGIEPDLFNSLLPAAGLGLICGETGS 163
Cdd:TIGR02525 81 AIQLRGDENGRYGLGRGERVRFRCNFIQATIGKLETAISLTLRVIPSDIPDLKQMGIEPDLFNSLLPAAGLGLICGETGS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 164 GKSTLMASIFQYCGETYQDRKIITVEDPIEYRLGSRDWIAPaPAQSQIGRDIDSFHNFITLSgLRRSPKIMGVGELLNRL 243
Cdd:TIGR02525 161 GKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLP-PAQSQIGRDVDSFANGIRLA-LRRAPKIIGVGEIRDLE 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 244 SFEAAVLAGKSGHFCLGTLHVKTVGEAISRSLQNYPPEMREAAAFDLLSILSYIIVQRLLKTKDGRRKAVREYLVIDNSL 323
Cdd:TIGR02525 239 TFQAAVLAGQSGHFCLGTLHVKSPGEAISRCLQMYPPEMREAAAFDLLSILQYIIVQRLLRTTDGKRQAVREYIVFDDSL 318
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2241785837 324 RRKLYDVDYSKWGRYIDDLLIAENRSLIQNAWAMHQEGLIDEAEVIEVAGYMDY 377
Cdd:TIGR02525 319 RRKLYDVDYSKWGRYIDDILRAEQRRIADQAWAMHQEGRIDEREAAEVIGAMEF 372
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
11-372 |
2.96e-83 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 257.33 E-value: 2.96e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 11 TPQTLERFLVHCSNNEVSDILLQGGDKIWVERHGRQLPMTSYPLDNLELERTVDKVFGQEIKGTLKSAAVVNTAIQLRGD 90
Cdd:COG2805 1 MAMDLDELLKLAVEQGASDLHLTVGSPPMLRIDGELVPLDDPPLTPEDLEALLKEILTEEQRERLEEEGELDFSYSLPGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 91 EagtiglgrgetrRFRANftqadIYKTEAAMSLTLRVLNEVIPQLKQMGIEPDLFNSLLPAAGLGLICGETGSGKSTLMA 170
Cdd:COG2805 81 G------------RFRVN-----IFRQRGGVAAVLRLIPSEIPTLEELGLPPVLKELAELPRGLVLVTGPTGSGKSTTLA 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 171 SIFQYCGETyQDRKIITVEDPIEYRLGSRDWIapaPAQSQIGRDIDSFHNFItLSGLRRSPKIMGVGELLNRLSFEAAVL 250
Cdd:COG2805 144 AMIDYINET-RAKHIITIEDPIEFVHKHKKSL---INQREVGRDTPSFANAL-RAALREDPDVILVGEMRDLETIEAALT 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 251 AGKSGHFCLGTLHVKTVGEAISRSLQNYPPEMREAAAFDLLSILSYIIVQRLLKTKDGR-RKAVREYLVIDNSLRRKLYD 329
Cdd:COG2805 219 AAETGHLVFATLHTNSAAQTIDRIIDVFPPEEQAQIRSQLAESLRGVISQRLLPRADGGgRVAAREILVNTPAVRNLIRE 298
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2241785837 330 VDYSKWGRYIDDLLIAENRSLIQNAWAMHQEGLIDEAEVIEVA 372
Cdd:COG2805 299 GKTHQIPSLIQTGKKLGMQTMDQSLAELVKEGLITEETALAYA 341
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
142-320 |
7.35e-78 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 237.66 E-value: 7.35e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 142 PDLFNSLLPAAGLGLICGETGSGKSTLMASIFQYCGETYQ-DRKIITVEDPIEYRLGSRDWIAPAPAQSQIGRDIDSFHN 220
Cdd:cd19516 1 PDLVEALFPREGLVYVAGATGSGKSTLLAAIYRYILENDPpDRKIITYEDPIEFVYDGIKSKHSIIVQSQIPRHFKSFAK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 221 FITlSGLRRSPKIMGVGELLNRLSFEAAVLAGKSGHFCLGTLHVKTVGEAISRSLQNYPPEMREAAAFDLLSILSYIIVQ 300
Cdd:cd19516 81 AVR-EALRRKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLFPPEERDAAAYDLLSTLRFIIVQ 159
|
170 180
....*....|....*....|
gi 2241785837 301 RLLKTKDGRRKAVREYLVID 320
Cdd:cd19516 160 RLVRTTDGKRVAVREYLVFD 179
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
14-373 |
3.44e-45 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 158.64 E-value: 3.44e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 14 TLERFLVHCSNNEVSDILLQGGDKIWVERHGRQLPMTSYPLDNLELERTVDKVFGQEIKGTLKSAAVVNTAIQLRGdeag 93
Cdd:TIGR01420 1 SLEEILREAVKLGASDIHLTAGAPPAMRIDGDLVRIEFEPLTPEDTQKLAREILSEKQREEFEENGELDFSFSLPG---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 94 tiglgrgeTRRFRANftqadIYKTEAAMSLTLRVLNEVIPQLKQMGIePDLFNSLLPA-AGLGLICGETGSGKSTLMASI 172
Cdd:TIGR01420 77 --------VGRFRVN-----AFYQRGGVALVLRLIPSKIPTFEELGL-PPVLRELAERpRGLILVTGPTGSGKSTTLASM 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 173 FQYCGETyQDRKIITVEDPIEYRLGSRDWIApapAQSQIGRDIDSFHNFITlSGLRRSPKIMGVGELLNRLSFEAAVLAG 252
Cdd:TIGR01420 143 IDYINKN-KAYHIITIEDPIEYVHTNKRSLI---NQREVGEDTLSFANALR-AALREDPDVILIGEMRDLETVELALTAA 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 253 KSGHFCLGTLHVKTVGEAISRSLQNYPPEMREAAAFDLLSILSYIIVQRLLKTKDGR-RKAVREYLVIDNSLRrklydvD 331
Cdd:TIGR01420 218 ETGHLVFGTLHTNSAAQTIERIIDVFPAEEQEQIRTQLAESLVAIISQRLLPKADGGgRVLAVEILINTPAVR------N 291
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 2241785837 332 YSKWGRY--IDDLLIAENR----SLIQNAWAMHQEGLIDEAEVIEVAG 373
Cdd:TIGR01420 292 LIREGKThqIKSLIQTGQQlgmqTFDQHLAQLYKKGLITLEDALEAAP 339
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
132-324 |
5.44e-40 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 141.52 E-value: 5.44e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 132 IPQLKQMGIEPDLFNSLLPAAGLGLICGETGSGKSTLMASIFQYCGETYqDRKIITVEDPIEYRLGSRDWIApapAQSQI 211
Cdd:cd01131 1 IPTFEELGLPPVLKDLALKPRGLVLVTGPTGSGKSTTLAAMIDYINETR-SKHIITIEDPIEFVHKHKKSLI---NQREV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 212 GRDIDSFHNFITlSGLRRSPKIMGVGELLNRLSFEAAVLAGKSGHFCLGTLHVKTVGEAISRSLQNYPPEMREAAAFDLL 291
Cdd:cd01131 77 GRDTESFAAALR-AALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDVFPPEQQEQVRIQLA 155
|
170 180 190
....*....|....*....|....*....|....
gi 2241785837 292 SILSYIIVQRLLKTKDGR-RKAVREYLVIDNSLR 324
Cdd:cd01131 156 SSLRGVISQRLLPKKDGGgRVAAFEILINTPAIR 189
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
14-318 |
8.89e-33 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 125.98 E-value: 8.89e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 14 TLERFLVHCSNNEVSDILLQGGDKIWVERHGRQLPMTSYPLDNLELERTVDKVFGQEIKGTLKSAAVVNTAIQLRGdeag 93
Cdd:COG5008 2 DLEDLLKLMVEKKASDLFITAGAPPSIKIDGKLTPLSQQPLTPEQVRELAYSIMNEEQREEFERTKECNFAISLPG---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 94 tIGlgrgetrRFRAN-FTQadiyKTEAAMslTLRVLNEVIPQLKQMGIePDLFNSLLPAA-GLGLICGETGSGKSTLMAS 171
Cdd:COG5008 78 -VG-------RFRVNaFRQ----RGSVGM--VLRRIETEIPTLDELGL-PPVLKDLIMEKrGLVLFVGATGSGKSTTLAA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 172 IFQY-----CGEtyqdrkIITVEDPIEYRLGSRDWIApapAQSQIGRDIDSFHNfiTL-SGLRRSPK-IMgVGELLNRLS 244
Cdd:COG5008 143 MIDHrnensSGH------ILTIEDPIEFVHKHKKSIV---TQREVGVDTESYEV--ALkNALRQAPDvIL-IGEIRDRET 210
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2241785837 245 FEAAVLAGKSGHFCLGTLHVKTVGEAISRSLQNYPPEMREAAAFDLLSILSYIIVQRLLKTKDGRRKAVREYLV 318
Cdd:COG5008 211 MEHAIAFAETGHLCLATLHANNANQALDRIINFFPEERRPQLLMDLSLNLRAIVSQRLVPTKDGGRVAAVEVLL 284
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
153-320 |
3.97e-29 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 110.65 E-value: 3.97e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 153 GLGLICGETGSGKSTLMASIFQYCGETyqDRKIITVEDPIEYRLgsrDWIapapAQSQIGRDID-SFHNFITlSGLRRSP 231
Cdd:cd01129 12 GLILVTGPTGSGKTTTLYAMLRELNGP--ERNIITIEDPVEYQI---PGI----NQSQVNEKIGlTFADALR-AILRQDP 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 232 KIMGVGELLNRLSFEAAVLAGKSGHFCLGTLHVKTVGEAISRsLQNY--PPemreaaaFDLLSILSYIIVQRLLktkdgR 309
Cdd:cd01129 82 DIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITR-LLDMgiEP-------FLLASALRGVIAQRLV-----G 148
|
170
....*....|.
gi 2241785837 310 RKAVREYLVID 320
Cdd:cd01129 149 RTAIAEVLVLD 159
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
122-302 |
2.92e-20 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 89.27 E-value: 2.92e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 122 SLTLRVLNEV-----IPQLKQMGIEPDLFNSLLPAA-GLGLICGETGSGKSTLMASIFQYCGETyqDRKIITVEDPIEYR 195
Cdd:pfam00437 94 KLVIRLLDPSnvalsLDELGMTGAQDEALLEFLRQPrGNILVTGPTGSGKTTTLYAALGELNTR--DENIVTVEDPVEIQ 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 196 LgsrdwiaPAPAQSQIGRDID-SFHNFITlSGLRRSPKIMGVGELLNRLSFEAAVLAGKSGHFCLGTLHVKTVGEAISRs 274
Cdd:pfam00437 172 L-------EGINQVQLNARAGvTFADLLR-AILRQDPDRIMVGEIRDLETAEIALQAANTGHLVLSTLHTNSAAGALTR- 242
|
170 180
....*....|....*....|....*...
gi 2241785837 275 LQNYPPEMreaaaFDLLSILSYIIVQRL 302
Cdd:pfam00437 243 LQDMGVPP-----FELASSLLLVIAQRL 265
|
|
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
122-373 |
1.01e-15 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 78.70 E-value: 1.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 122 SLTLRVLN--EVIPQLKQMGIEPDLFNSLLPAA----GLGLICGETGSGKSTLMASIFQYCgeTYQDRKIITVEDPIEYR 195
Cdd:COG2804 277 KVVLRILDksAALLDLEQLGFSPDQLERLRRLIrrphGIILVTGPTGSGKTTTLYAALNEL--NTPERNIITVEDPVEYQ 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 196 LgsrdwiaPAPAQSQIGRDID-SFHnfitlSGLR---RS-PKIMGVGELLNRLSFEAAVLAGKSGHFCLGTLHVKTVGEA 270
Cdd:COG2804 355 L-------PGINQVQVNPKIGlTFA-----SALRsilRQdPDVIMVGEIRDLETAEIAVQAALTGHLVLSTLHTNDAPSA 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 271 ISR-------------SL-----------------QNYPPEMREAAAFDL-LSILSYIIVQRllktkdGR---------- 309
Cdd:COG2804 423 ITRlldmgvepfllasSLlgvlaqrlvrrlcphckEPYEPDPEELERLGLpPEELAPLTFYR------GVgcehcngtgy 496
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2241785837 310 --RKAVREYLVIDNSLRRKLYD-VDYSKwgryIDDLLIAEN-RSLIQNAWAMHQEGLIDEAEVIEVAG 373
Cdd:COG2804 497 kgRTGIYELLVIDDELRELIAEgASAAE----LREAARKEGmRTLREDGLEKVLQGITTLEEVLRVTG 560
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
143-307 |
2.84e-13 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 67.42 E-value: 2.84e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 143 DLFNSLLPAAGLGLICGETGSGKSTLMASIFQycgETYQDRKIITVEDPIEYRLGSRDWIapapAQSQIGRDIDSFHNFI 222
Cdd:cd19477 1 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSILE---FIPKEERIISIEDTEEIVFKHHKNY----TQLFFGGNITSADCLK 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 223 TLsgLRRSPKIMGVGELLNRLSFEaAVLAGKSGH-FCLGTLHVKTVGEAISR------SLQNYPPEMREAAAFDLLSILS 295
Cdd:cd19477 74 SC--LRQRPDRIILGELRSSEAYD-FYNVLCSGHkGTLTTLHAGSSEEAFIRlan*ssSNSAARNIKFESLIEGFKDLID 150
|
170
....*....|..
gi 2241785837 296 YIIVQRLLKTKD 307
Cdd:cd19477 151 GIVHINHHKQCD 162
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
156-311 |
7.95e-13 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 66.02 E-value: 7.95e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 156 LICGETGSGKSTLMASIFQYCGEtyqDRKIITVEDPIEYRLGSRDWI---APAPAQSQIGRDIDSfhnfITLSGLRRSPK 232
Cdd:cd01130 16 LISGGTGSGKTTLLNALLSFIPP---DERIVTIEDTRELQLPHPNVVhllTRPGGGEKGEVTMAD----LLKAALRMRPD 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 233 IMGVGELLNRlsfEAAVL--AGKSGHF-CLGTLHVKTVGEAISR----SLQNYPPEMREAAAFDLLSILSYIIVQRllKT 305
Cdd:cd01130 89 RIIVGEVRGG---EAYDMlqAMNTGHPgSITTIHANSAEDAIDRlatlVLEAGVNLDEEALRRLIASAIDVIVHVK--RL 163
|
....*.
gi 2241785837 306 KDGRRK 311
Cdd:cd01130 164 GDGVRR 169
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
122-321 |
2.61e-11 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 64.72 E-value: 2.61e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 122 SLTLRVLNEV---IPQLkqmgIEPDLFNSLLpAAGL---------GLICGETGSGKSTLMASIFQYCGETYqdrKIITVE 189
Cdd:COG0630 253 SFTIRKFREVpltPIDL----IEWGTLSPEL-AAYLwlllengksVLVAGGTASGKTTLLNALLSFIPPDA---KIVTIE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 190 DPIEYRLGSRDWIA--PAPAQSQIGRDIDSFHNFItlSGLRRSPKIMGVGELlnRLSfEAAVL--AGKSGHFCLGTLHVK 265
Cdd:COG0630 325 DTRELNLPHENWISlvTRESFGGEEGDVTMFDLLK--AALRQRPDYIVVGEV--RGE-EAYTLfqAMATGHGVLSTFHAD 399
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2241785837 266 TVGEAISR---SLQNYPPEMreaaaFDLLSIlsyIIVQRLLKTKDG--RR-KAVREYLVIDN 321
Cdd:COG0630 400 SVESAINRltsPPINVPRTL-----LQALDL---VVFQKRVRVGGKrvRRvTSIVEIVGYDP 453
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
2-311 |
7.19e-11 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 63.26 E-value: 7.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 2 EAFNFGPtltpqtLERFLvhcSNNEVSDILLQGGDKIWVERHGRqlpmtsypldnleLERTvDKVFGQEikgtlksAAVV 81
Cdd:COG4962 52 ELFGLGP------LEPLL---DDPDVTDIMVNGPDEVFVERGGR-------------LERT-DVRFDSE-------EELR 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 82 NTAIQLrgdeAGTIGlgrgetRRF---------------RANFTQADIykTEAAMSLTLRVLNEVIPQLKQMgIEPDLFN 146
Cdd:COG4962 102 RLIERI----AARVG------RRLdesspivdarlpdgsRVNAVIPPV--ARDGPSLSIRKFRKRPLTLEDL-VALGSLT 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 147 ----SLLPAAGLG----LICGETGSGKSTLMASIFQYCGEtyqDRKIITVEDPIEYRLGSRDWIA----PAPAQSQiGRd 214
Cdd:COG4962 169 pemaEFLRAAVRArlniLVSGGTGSGKTTLLNALSGFIPP---DERIVTIEDAAELQLQHPHVVRletrPPNVEGA-GE- 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 215 idsfhnfITLS-----GLRRSPKIMGVGE--------LLNrlsfeaAVLAGKSGhfCLGTLHVKTVGEAISRsLQNY--- 278
Cdd:COG4962 244 -------VTLRdlvrnALRMRPDRIIVGEvrgaealdMLQ------AMNTGHDG--SMSTLHANSARDALAR-LETLalm 307
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 2241785837 279 -----PPEM-RE--AAAFDLLsilsyIIVQRLlktKDGRRK 311
Cdd:COG4962 308 agenlPREAvRRqiASAIDLV-----VHLERL---RDGRRR 340
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
125-302 |
8.33e-11 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 63.41 E-value: 8.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 125 LRVLNEViPQ---LKQMGIEP---DLFNSLLPAA-GLGLICGETGSGKSTLMASIFQYCGETyqDRKIITVEDPIEYRLg 197
Cdd:PRK10436 185 LRLLQQV-QQaldLETLGMTPaqlAQFRQALQQPqGLILVTGPTGSGKTVTLYSALQTLNTA--QINICSVEDPVEIPL- 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2241785837 198 srDWIAPAPAQSQIGRDidsFHNFI-TLsgLRRSPKIMGVGELLNRLSFEAAVLAGKSGHFCLGTLHVKTVGEAISRsLQ 276
Cdd:PRK10436 261 --AGINQTQIHPKAGLT---FQRVLrAL--LRQDPDVIMVGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTSETLVR-LQ 332
|
170 180
....*....|....*....|....*...
gi 2241785837 277 NY--PPEMreaaafdLLSILSYIIVQRL 302
Cdd:PRK10436 333 QMgiARWM-------LASALKLVIAQRL 353
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
156-194 |
7.06e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 36.97 E-value: 7.06e-03
10 20 30
....*....|....*....|....*....|....*....
gi 2241785837 156 LICGETGSGKSTLMASIFQYCGETYQDRKIITVEDPIEY 194
Cdd:smart00382 6 LIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEE 44
|
|
| |
