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Conserved domains on  [gi|2187431653|emb|CAH1239244|]
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VWDE [Branchiostoma lanceolatum]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
VWD super family cl47498
von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is ...
 28-53 3.35e-05

von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods.


The actual alignment was detected with superfamily member pfam00094:

Pssm-ID: 459671 [Multi-domain]  Cd Length: 154  Bit Score: 38.89  E-value: 3.35e-05
                          10        20
                  ....*....|....*....|....*.
gi 2187431653  28 GHTLGLCGTWDDppNTGNDFTLPDGS 53
Cdd:pfam00094 131 GKTCGLCGNYNG--NQEDDFMTPDGT 154
 
Name Accession Description Interval E-value
VWD pfam00094
von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is ...
 28-53 3.35e-05

von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods.


Pssm-ID: 459671 [Multi-domain]  Cd Length: 154  Bit Score: 38.89  E-value: 3.35e-05
                          10        20
                  ....*....|....*....|....*.
gi 2187431653  28 GHTLGLCGTWDDppNTGNDFTLPDGS 53
Cdd:pfam00094 131 GKTCGLCGNYNG--NQEDDFMTPDGT 154
VWD smart00216
von Willebrand factor (vWF) type D domain; Von Willebrand factor contains several type D ...
 28-52 2.12e-04

von Willebrand factor (vWF) type D domain; Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.


Pssm-ID: 214566 [Multi-domain]  Cd Length: 163  Bit Score: 36.61  E-value: 2.12e-04
                           10        20
                   ....*....|....*....|....*
gi 2187431653   28 GHTLGLCGTWDDppNTGNDFTLPDG 52
Cdd:smart00216 141 GKTCGLCGNFDG--EPEDDFRTPDG 163
 
Name Accession Description Interval E-value
VWD pfam00094
von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is ...
 28-53 3.35e-05

von Willebrand factor type D domain; Swiss:P17554 contains a vwd domain. Its function is unrelated but the similarity is very strong by several methods.


Pssm-ID: 459671 [Multi-domain]  Cd Length: 154  Bit Score: 38.89  E-value: 3.35e-05
                          10        20
                  ....*....|....*....|....*.
gi 2187431653  28 GHTLGLCGTWDDppNTGNDFTLPDGS 53
Cdd:pfam00094 131 GKTCGLCGNYNG--NQEDDFMTPDGT 154
VWD smart00216
von Willebrand factor (vWF) type D domain; Von Willebrand factor contains several type D ...
 28-52 2.12e-04

von Willebrand factor (vWF) type D domain; Von Willebrand factor contains several type D domains: D1 and D2 are present within the N-terminal propeptide whereas the remaining D domains are required for multimerisation.


Pssm-ID: 214566 [Multi-domain]  Cd Length: 163  Bit Score: 36.61  E-value: 2.12e-04
                           10        20
                   ....*....|....*....|....*
gi 2187431653   28 GHTLGLCGTWDDppNTGNDFTLPDG 52
Cdd:smart00216 141 GKTCGLCGNFDG--EPEDDFRTPDG 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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