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Conserved domains on  [gi|2017519242|emb|CAG0937785|]
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evolved beta-galactosidase subunit beta [Gallionellaceae bacterium]

Protein Classification

YhcH/YjgK/YiaL family protein( domain architecture ID 10513517)

YhcH/YjgK/YiaL family protein similar to Escherichia coli artificially evolved beta-galactosidase subunit beta

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF386 pfam04074
YhcH/YjgK/YiaL; This family consists of bacterial proteins. YjgK (TabA) influences biofilm ...
1-147 1.07e-69

YhcH/YjgK/YiaL; This family consists of bacterial proteins. YjgK (TabA) influences biofilm formation by toxin-antitoxin systems. Another member of this family, YhcH, is a possible sugar isomerase of sialic acid catabolism.


:

Pssm-ID: 461158  Cd Length: 148  Bit Score: 207.04  E-value: 1.07e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017519242   1 MIFSTLTQSDRYaaLHPLFPRAFEFIRNTDMLALPPGRHSIIGDDLFAIVENVPGRSREDAQLECHRKYIDIQLVLEGRD 80
Cdd:pfam04074   1 MIIDNLENLERY--LHPNLKKAFEYLKETDLENLPLGKYEIDGDDLFANVQEYETKPAEEAKFESHRKYIDIQYVLEGEE 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017519242  81 EMGWKPLADCHNPVSDYSAEKDIRFFR-DTPSSWIATPPGHFCIFFPEDAHAPLVSEG--QIRKVIFKIA 147
Cdd:pfam04074  79 TIGWAPLADLETLTEPYDEEKDIAFYAdGEPETFVTLKPGDFAIFFPEDAHRPGIGGGpeKVRKVVVKVR 148
 
Name Accession Description Interval E-value
DUF386 pfam04074
YhcH/YjgK/YiaL; This family consists of bacterial proteins. YjgK (TabA) influences biofilm ...
1-147 1.07e-69

YhcH/YjgK/YiaL; This family consists of bacterial proteins. YjgK (TabA) influences biofilm formation by toxin-antitoxin systems. Another member of this family, YhcH, is a possible sugar isomerase of sialic acid catabolism.


Pssm-ID: 461158  Cd Length: 148  Bit Score: 207.04  E-value: 1.07e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017519242   1 MIFSTLTQSDRYaaLHPLFPRAFEFIRNTDMLALPPGRHSIIGDDLFAIVENVPGRSREDAQLECHRKYIDIQLVLEGRD 80
Cdd:pfam04074   1 MIIDNLENLERY--LHPNLKKAFEYLKETDLENLPLGKYEIDGDDLFANVQEYETKPAEEAKFESHRKYIDIQYVLEGEE 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017519242  81 EMGWKPLADCHNPVSDYSAEKDIRFFR-DTPSSWIATPPGHFCIFFPEDAHAPLVSEG--QIRKVIFKIA 147
Cdd:pfam04074  79 TIGWAPLADLETLTEPYDEEKDIAFYAdGEPETFVTLKPGDFAIFFPEDAHRPGIGGGpeKVRKVVVKVR 148
EbgC COG2731
Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism];
1-138 4.03e-63

Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism];


Pssm-ID: 442037  Cd Length: 138  Bit Score: 190.08  E-value: 4.03e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017519242   1 MIFSTLTQSDRYAALHPLFPRAFEFIRNTDMLALPPGRHSIIGDDLFAIVENVPGRSREDAQLECHRKYIDIQLVLEGRD 80
Cdd:COG2731     1 MIIGNLSNLDRYAGLPPALKKALEFLKETDLAALPPGRYEIDGDNIFANVQEYETKPAEERKAEAHRKYIDIQILLSGEE 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2017519242  81 EMGWKPLaDCHNPVSDYSAEKDIRFFRDT-PSSWIATPPGHFCIFFPEDAHAPLVSEGQ 138
Cdd:COG2731    81 RIGYAPL-ENLEVSEPYDEEKDIQFYEDIePESFLTLQPGDFAIFFPEDAHKPGCAVGE 138
TIGR00022 TIGR00022
YhcH/YjgK/YiaL family protein; This family consists of conserved hypothetical proteins, about ...
1-134 6.46e-28

YhcH/YjgK/YiaL family protein; This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK. [Unknown function, General]


Pssm-ID: 129133  Cd Length: 142  Bit Score: 100.61  E-value: 6.46e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017519242   1 MIFSTLTQSDRYAALHPLFPRAFEFIRNTDMLALPPGRHSIIGDDLFAIVENVPGRSREDAQLECHRKYIDIQLVLEGRD 80
Cdd:TIGR00022   1 MIIGSITNLNPKVGLPPAIAEAIDFLNATDLNALEPGRHDIDGDRIFMNVMEPETAEPVSKKAELHHRYLDIQLLLRGEE 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2017519242  81 EMGWKpLADCHNPVS-DYSAEKDIRFFRDTP-SSWIATPPGHFCIFFPEDAHAPLV 134
Cdd:TIGR00022  81 NIEVG-TTPPNLSVYeDYLEEDDIQLCADIDdEQTVILKPGMFAVFYPGEPHKPGC 135
acetylneur_anom NF040884
N-acetylneuraminate anomerase;
1-146 2.82e-25

N-acetylneuraminate anomerase;


Pssm-ID: 468820  Cd Length: 155  Bit Score: 94.16  E-value: 2.82e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017519242   1 MIFSTLTQSDRYAALHPLFPRAFEFIRNTDMLALPPGRHSIIGDDLFAIVENVPGRSREDAQLECHRKYIDIQLVLEG-- 78
Cdd:NF040884    1 MILGDLSQPESASGLPPVLQDALTLALAADLQELAPGRYEIDGDDIFMNVMEFETQPAESKKAELHRQYIDIQLLLSGee 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2017519242  79 RDEMGwkpLADCHNPVSDYSAEKDIRFFRDTP-SSWIATPPGHFCIFFPEDAHAP--LVSE--GQIRKVIFKI 146
Cdd:NF040884   81 RIDYG---LAGSARECEEYHEEDDYQLCDTIEnEQTLTLTPGMFAVFMPGEPHKPgcVVGTppGEIKKVVVKV 150
 
Name Accession Description Interval E-value
DUF386 pfam04074
YhcH/YjgK/YiaL; This family consists of bacterial proteins. YjgK (TabA) influences biofilm ...
1-147 1.07e-69

YhcH/YjgK/YiaL; This family consists of bacterial proteins. YjgK (TabA) influences biofilm formation by toxin-antitoxin systems. Another member of this family, YhcH, is a possible sugar isomerase of sialic acid catabolism.


Pssm-ID: 461158  Cd Length: 148  Bit Score: 207.04  E-value: 1.07e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017519242   1 MIFSTLTQSDRYaaLHPLFPRAFEFIRNTDMLALPPGRHSIIGDDLFAIVENVPGRSREDAQLECHRKYIDIQLVLEGRD 80
Cdd:pfam04074   1 MIIDNLENLERY--LHPNLKKAFEYLKETDLENLPLGKYEIDGDDLFANVQEYETKPAEEAKFESHRKYIDIQYVLEGEE 78
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017519242  81 EMGWKPLADCHNPVSDYSAEKDIRFFR-DTPSSWIATPPGHFCIFFPEDAHAPLVSEG--QIRKVIFKIA 147
Cdd:pfam04074  79 TIGWAPLADLETLTEPYDEEKDIAFYAdGEPETFVTLKPGDFAIFFPEDAHRPGIGGGpeKVRKVVVKVR 148
EbgC COG2731
Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism];
1-138 4.03e-63

Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism];


Pssm-ID: 442037  Cd Length: 138  Bit Score: 190.08  E-value: 4.03e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017519242   1 MIFSTLTQSDRYAALHPLFPRAFEFIRNTDMLALPPGRHSIIGDDLFAIVENVPGRSREDAQLECHRKYIDIQLVLEGRD 80
Cdd:COG2731     1 MIIGNLSNLDRYAGLPPALKKALEFLKETDLAALPPGRYEIDGDNIFANVQEYETKPAEERKAEAHRKYIDIQILLSGEE 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2017519242  81 EMGWKPLaDCHNPVSDYSAEKDIRFFRDT-PSSWIATPPGHFCIFFPEDAHAPLVSEGQ 138
Cdd:COG2731    81 RIGYAPL-ENLEVSEPYDEEKDIQFYEDIePESFLTLQPGDFAIFFPEDAHKPGCAVGE 138
TIGR00022 TIGR00022
YhcH/YjgK/YiaL family protein; This family consists of conserved hypothetical proteins, about ...
1-134 6.46e-28

YhcH/YjgK/YiaL family protein; This family consists of conserved hypothetical proteins, about 150 amino acids in length. Members with limited information include YhcH, a possible sugar isomerase of sialic acid catabolism, and YjgK. [Unknown function, General]


Pssm-ID: 129133  Cd Length: 142  Bit Score: 100.61  E-value: 6.46e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017519242   1 MIFSTLTQSDRYAALHPLFPRAFEFIRNTDMLALPPGRHSIIGDDLFAIVENVPGRSREDAQLECHRKYIDIQLVLEGRD 80
Cdd:TIGR00022   1 MIIGSITNLNPKVGLPPAIAEAIDFLNATDLNALEPGRHDIDGDRIFMNVMEPETAEPVSKKAELHHRYLDIQLLLRGEE 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2017519242  81 EMGWKpLADCHNPVS-DYSAEKDIRFFRDTP-SSWIATPPGHFCIFFPEDAHAPLV 134
Cdd:TIGR00022  81 NIEVG-TTPPNLSVYeDYLEEDDIQLCADIDdEQTVILKPGMFAVFYPGEPHKPGC 135
acetylneur_anom NF040884
N-acetylneuraminate anomerase;
1-146 2.82e-25

N-acetylneuraminate anomerase;


Pssm-ID: 468820  Cd Length: 155  Bit Score: 94.16  E-value: 2.82e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2017519242   1 MIFSTLTQSDRYAALHPLFPRAFEFIRNTDMLALPPGRHSIIGDDLFAIVENVPGRSREDAQLECHRKYIDIQLVLEG-- 78
Cdd:NF040884    1 MILGDLSQPESASGLPPVLQDALTLALAADLQELAPGRYEIDGDDIFMNVMEFETQPAESKKAELHRQYIDIQLLLSGee 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2017519242  79 RDEMGwkpLADCHNPVSDYSAEKDIRFFRDTP-SSWIATPPGHFCIFFPEDAHAP--LVSE--GQIRKVIFKI 146
Cdd:NF040884   81 RIDYG---LAGSARECEEYHEEDDYQLCDTIEnEQTLTLTPGMFAVFMPGEPHKPgcVVGTppGEIKKVVVKV 150
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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