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Conserved domains on  [gi|2041616056|emb|CAF3514354|]
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unnamed protein product [Didymodactylos carnosus]

Protein Classification

Fn3_assoc superfamily-containing protein( domain architecture ID 1912586)

Fn3_assoc superfamily-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fn3_assoc super family cl44623
Fn3 associated;
728-790 2.39e-06

Fn3 associated;


The actual alignment was detected with superfamily member pfam13287:

Pssm-ID: 463829 [Multi-domain]  Cd Length: 59  Bit Score: 45.74  E-value: 2.39e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2041616056  728 VRLECPNRSATIYYTLNGSIPTIQNNnvmMYNNAthILLEEGGlhIIRAYAIEDQKLASTVMT 790
Cdd:pfam13287    1 VTLTSETPGAEIYYTTDGSDPTTNSP---KYTQP--IVINENT--TIKAIAVRPGKNISKVVT 56
 
Name Accession Description Interval E-value
Fn3_assoc pfam13287
Fn3 associated;
728-790 2.39e-06

Fn3 associated;


Pssm-ID: 463829 [Multi-domain]  Cd Length: 59  Bit Score: 45.74  E-value: 2.39e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2041616056  728 VRLECPNRSATIYYTLNGSIPTIQNNnvmMYNNAthILLEEGGlhIIRAYAIEDQKLASTVMT 790
Cdd:pfam13287    1 VTLTSETPGAEIYYTTDGSDPTTNSP---KYTQP--IVINENT--TIKAIAVRPGKNISKVVT 56
 
Name Accession Description Interval E-value
Fn3_assoc pfam13287
Fn3 associated;
728-790 2.39e-06

Fn3 associated;


Pssm-ID: 463829 [Multi-domain]  Cd Length: 59  Bit Score: 45.74  E-value: 2.39e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2041616056  728 VRLECPNRSATIYYTLNGSIPTIQNNnvmMYNNAthILLEEGGlhIIRAYAIEDQKLASTVMT 790
Cdd:pfam13287    1 VTLTSETPGAEIYYTTDGSDPTTNSP---KYTQP--IVINENT--TIKAIAVRPGKNISKVVT 56
CHB_HEX_C_1 pfam13290
Chitobiase/beta-hexosaminidase C-terminal domain;
719-790 2.84e-06

Chitobiase/beta-hexosaminidase C-terminal domain;


Pssm-ID: 433091 [Multi-domain]  Cd Length: 67  Bit Score: 46.12  E-value: 2.84e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2041616056  719 PGASQHGDEVRLECPNRSATIYYTLNGSIPTIQNNnvmMYNNAthILLEEGglHIIRAYAIEDQKLASTVMT 790
Cdd:pfam13290    3 GGTYSSAQTVTLSTATEGATIYYTTDGSEPTTSSP---KYTGP--ITISST--TTIKAIAVDDGGNSSAVVT 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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