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Conserved domains on  [gi|1916570230|emb|CAD6244789|]
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unnamed protein product [Miscanthus lutarioriparius]

Protein Classification

polysaccharide lyase domain-containing protein; polysaccharide lyase 6 family protein( domain architecture ID 10010726)

polysaccharide lyase domain-containing protein may function as a hydrolase| polysaccharide lyase 6 family protein similar to Pseudomonas sp. alginate lyase that catalyzes the eliminative cleavage of alginate to produce oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enuronosyl groups at their non-reducing ends and beta-D-mannuronate at their reducing end

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02188 PLN02188
polygalacturonase/glycoside hydrolase family protein
 1-390 0e+00

polygalacturonase/glycoside hydrolase family protein


:

Pssm-ID: 215120 [Multi-domain]  Cd Length: 404  Bit Score: 733.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230   1 MEARPRLLLVVVAIF---MSISASGAAVI--------NVKNYGAQGNGVNDDSKPLMAAWKAACGSAGAVTMVVTPGTYY 69
Cdd:PLN02188    1 MEFRLLLLLVVVFIVnalVLSSAGGGSVVkgsstflfDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  70 IGPVQFHGPC-KASTLTFqlqgTLKAATDLTRF--GNDWIEFGWVNGLTVA-GGVIDGQGAASWPFNKCPVRKDCKVLPT 145
Cdd:PLN02188   81 IGPVQFHGPCtNVSSLTF----TLKAATDLSRYgsGNDWIEFGWVNGLTLTgGGTFDGQGAAAWPFNKCPIRKDCKLLPT 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 146 SVLFVNNQNTVVRDVTSVNPKFFHIALLSVKNIRMSGLKISAPSNSPNTDGIHIERSSGIQIMDTHISTGDDCISIGQGN 225
Cdd:PLN02188  157 SVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGN 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 226 DNVDIARVQCGPGHGMSVGSLGRYAGEGDVTRVHVRDMTFTGTMNGVRIKTWENSPSKSHAAHMVFENMVMKDVQNPIII 305
Cdd:PLN02188  237 SQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIII 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 306 DQKYCPYYNCEHKYMSGVTIQDIQFKNIKGTATTPVAVLLRC--GVPCQGLVLQDVDLRYK-GQGGTSTKCENAKAKYVG 382
Cdd:PLN02188  317 DQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCsrGVPCQGVYLQDVHLDLSsGEGGTSSSCENVRAKYIG 396


                  ....*...
gi 1916570230 383 YQFPKPCP 390
Cdd:PLN02188  397 TQIPPPCP 404
 
Name Accession Description Interval E-value
PLN02188 PLN02188
polygalacturonase/glycoside hydrolase family protein
 1-390 0e+00

polygalacturonase/glycoside hydrolase family protein


Pssm-ID: 215120 [Multi-domain]  Cd Length: 404  Bit Score: 733.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230   1 MEARPRLLLVVVAIF---MSISASGAAVI--------NVKNYGAQGNGVNDDSKPLMAAWKAACGSAGAVTMVVTPGTYY 69
Cdd:PLN02188    1 MEFRLLLLLVVVFIVnalVLSSAGGGSVVkgsstflfDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  70 IGPVQFHGPC-KASTLTFqlqgTLKAATDLTRF--GNDWIEFGWVNGLTVA-GGVIDGQGAASWPFNKCPVRKDCKVLPT 145
Cdd:PLN02188   81 IGPVQFHGPCtNVSSLTF----TLKAATDLSRYgsGNDWIEFGWVNGLTLTgGGTFDGQGAAAWPFNKCPIRKDCKLLPT 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 146 SVLFVNNQNTVVRDVTSVNPKFFHIALLSVKNIRMSGLKISAPSNSPNTDGIHIERSSGIQIMDTHISTGDDCISIGQGN 225
Cdd:PLN02188  157 SVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGN 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 226 DNVDIARVQCGPGHGMSVGSLGRYAGEGDVTRVHVRDMTFTGTMNGVRIKTWENSPSKSHAAHMVFENMVMKDVQNPIII 305
Cdd:PLN02188  237 SQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIII 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 306 DQKYCPYYNCEHKYMSGVTIQDIQFKNIKGTATTPVAVLLRC--GVPCQGLVLQDVDLRYK-GQGGTSTKCENAKAKYVG 382
Cdd:PLN02188  317 DQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCsrGVPCQGVYLQDVHLDLSsGEGGTSSSCENVRAKYIG 396


                  ....*...
gi 1916570230 383 YQFPKPCP 390
Cdd:PLN02188  397 TQIPPPCP 404
Glyco_hydro_28 pfam00295
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ...
 81-379 3.67e-76

Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.


Pssm-ID: 425588 [Multi-domain]  Cd Length: 319  Bit Score: 238.44  E-value: 3.67e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  81 ASTLTFQLQGTLKAATDLTRFGNDWIEFGWVNGLTVAGGVIDGQGAASWPfNKCPVRKDCKVLPTSVLFVNNQNTVVRDV 160
Cdd:pfam00295  21 TSGTTVTFEGTTTFGYKEWNGKLIWISGSSITVTGASGGTIDGQGQRWWD-GKGTKKNGGKKKPKFIYIHKVKNSKITGL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 161 TSVNPKFFHIALLSVKNIRMSGLKISAP---SNSPNTDGIHIERSSGIQIMDTHISTGDDCISIGQGNdNVDIARVQCGP 237
Cdd:pfam00295 100 NIKNSPVFHFSVQSGTDLTISDITIDNSagdSNGHNTDGFDVGSSSGVTISNTNIYNQDDCIAINSGS-NISITNVTCGG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 238 GHGMSVGSLGRYaGEGDVTRVHVRDMTFTGTMNGVRIKTWENSPSKshAAHMVFENMVMKDV-QNPIIIDQKYCPYYNCe 316
Cdd:pfam00295 179 GHGISIGSVGGR-SDNTVKNVTVKDSTVVNSDNGVRIKTISGATGT--VSNITYENIVLSNIsKYGIVIDQDYENGEPT- 254

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1916570230 317 HKYMSGVTIQDIQFKNIKGT-ATTPVAVLLRCGV-PCQGLVLQDVDLRYkgqGGTSTKCENAKAK 379
Cdd:pfam00295 255 GKPTSGVKISDITFKNVTGTvASSATAVYLLCGDgSCSGWTWSGVNITG---GKSTSKCKNVPSG 316
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
23-361 2.36e-50

Polygalacturonase [Carbohydrate transport and metabolism];


Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 173.08  E-value: 2.36e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  23 AAVINVKNYGAQGNGVNDDSKPLMAAWkAACGSAGAVTMVVTPGTYYIGPVQFHgpckaSTLTFQLQ--GTLKAATDL-- 98
Cdd:COG5434     7 AKTFNITDFGAKGDGKTLNTAAIQKAI-DACAAAGGGTVLVPAGTYLTGPIFLK-----SNVTLHLEkgATLLGSTDPad 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  99 -----TRFGNDWIEFGW-------VNGLTVAG-GVIDGQGAASWPFNK-------CPVRKDCKVLPTSVLFVNNQNTVVR 158
Cdd:COG5434    81 yplveTRWEGGELKGYSaliyaenAENIAITGeGTIDGNGDAWWPWKKearqsgwVPVGAYDYLRPRLIQLKNCKNVLLE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 159 DVTSVNPKFFHIALLSVKNIRMSGLKISAPSNSPNTDGIHIERSSGIQIMDTHISTGDDCISI--GQGND--------NV 228
Cdd:COG5434   161 GVTLRNSPFWTIHPLGCENVTVDGVTIDNPADAPNTDGIDPDSCRNVLIENCYIDTGDDAIAIksGRDADgrrnrpteNI 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 229 DIARVQCGPGHG-MSVGSlgryagE--GDVTRVHVRDMTFTGTMNGVRIKTweNSPSKSHAAHMVFENMVMKDV-QNPII 304
Cdd:COG5434   241 VIRNCTFRSGHGgIVIGS------EtsGGVRNVTVENCTFDGTDRGLRIKS--RRGRGGVVENITIRNITMRNVkGTPIF 312

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 305 IDqkycPYYNCEHKYMSGvTIQDIQFKNIKGTATTPVAVLLrcGVP---CQGLVLQDVDL 361
Cdd:COG5434   313 IN----LFYEGDRGGPTP-TFRNITISNVTATGAKSAILIA--GLPeapIENITLENVTI 365
 
Name Accession Description Interval E-value
PLN02188 PLN02188
polygalacturonase/glycoside hydrolase family protein
 1-390 0e+00

polygalacturonase/glycoside hydrolase family protein


Pssm-ID: 215120 [Multi-domain]  Cd Length: 404  Bit Score: 733.58  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230   1 MEARPRLLLVVVAIF---MSISASGAAVI--------NVKNYGAQGNGVNDDSKPLMAAWKAACGSAGAVTMVVTPGTYY 69
Cdd:PLN02188    1 MEFRLLLLLVVVFIVnalVLSSAGGGSVVkgsstflfDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  70 IGPVQFHGPC-KASTLTFqlqgTLKAATDLTRF--GNDWIEFGWVNGLTVA-GGVIDGQGAASWPFNKCPVRKDCKVLPT 145
Cdd:PLN02188   81 IGPVQFHGPCtNVSSLTF----TLKAATDLSRYgsGNDWIEFGWVNGLTLTgGGTFDGQGAAAWPFNKCPIRKDCKLLPT 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 146 SVLFVNNQNTVVRDVTSVNPKFFHIALLSVKNIRMSGLKISAPSNSPNTDGIHIERSSGIQIMDTHISTGDDCISIGQGN 225
Cdd:PLN02188  157 SVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGN 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 226 DNVDIARVQCGPGHGMSVGSLGRYAGEGDVTRVHVRDMTFTGTMNGVRIKTWENSPSKSHAAHMVFENMVMKDVQNPIII 305
Cdd:PLN02188  237 SQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIII 316

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 306 DQKYCPYYNCEHKYMSGVTIQDIQFKNIKGTATTPVAVLLRC--GVPCQGLVLQDVDLRYK-GQGGTSTKCENAKAKYVG 382
Cdd:PLN02188  317 DQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCsrGVPCQGVYLQDVHLDLSsGEGGTSSSCENVRAKYIG 396


                  ....*...
gi 1916570230 383 YQFPKPCP 390
Cdd:PLN02188  397 TQIPPPCP 404
PLN02218 PLN02218
polygalacturonase ADPG
 15-387 5.66e-95

polygalacturonase ADPG


Pssm-ID: 177865 [Multi-domain]  Cd Length: 431  Bit Score: 290.77  E-value: 5.66e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  15 FMSISASGAAVINVKNYGAQGNGVNDDSKPLMAAWKAACGSAGAVTMVVTPG-TYYIGPVQFHGPCKaSTLTFQLQGTLK 93
Cdd:PLN02218   57 FVRASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGnTYLLKSIQLTGPCK-SIRTVQIFGTLS 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  94 AATDLTRFG--NDWIEFGWVNGLTVAGG---VIDGQGAASWPfNKCPVRKD--CKVLPTSVLFVNNQNTVVRDVTSVNPK 166
Cdd:PLN02218  136 ASQKRSDYKdiSKWIMFDGVNNLSVDGGstgVVDGNGETWWQ-NSCKRNKAkpCTKAPTALTFYNSKSLIVKNLRVRNAQ 214

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 167 FFHIALLSVKNIRMSGLKISAPSNSPNTDGIHIERSSGIQIMDTHISTGDDCISIGQGNDNVDIARVQCGPGHGMSVGSL 246
Cdd:PLN02218  215 QIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSL 294

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 247 GRYAGEGDVTRVHVRDMTFTGTMNGVRIKTWENSPSKshAAHMVFENMVMKDVQNPIIIDQKYCPYYNCEHKyMSGVTIQ 326
Cdd:PLN02218  295 GDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGT--ASNIIFQNIQMENVKNPIIIDQDYCDKSKCTSQ-QSAVQVK 371

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1916570230 327 DIQFKNIKGTATTPVAVLLRCG--VPCQGLVLQDVDLRykgqGGTSTkCENAKAKYVGYQFPK 387
Cdd:PLN02218  372 NVVYRNISGTSASDVAITFNCSknYPCQGIVLDNVNIK----GGKAT-CTNANVVDKGAVSPQ 429
PLN02155 PLN02155
polygalacturonase
 8-389 1.21e-90

polygalacturonase


Pssm-ID: 165802 [Multi-domain]  Cd Length: 394  Bit Score: 278.49  E-value: 1.21e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230   8 LLVVVAIFMSISASGAAVINVKNYGAQGNGVNDDSKPLMAAWKAACGSAGAVTMVVTPGTYYIGPVQFHGPCKaSTLTFQ 87
Cdd:PLN02155   10 LLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCK-SKITFQ 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  88 LQGTLKAATDLTRFGND--WIEFGWVNGLTVAGGVIDGQGAASWPFNKCPvrKDCKVLPTSVLFVNNQNTVVRDVTSVNP 165
Cdd:PLN02155   89 VAGTVVAPEDYRTFGNSgyWILFNKVNRFSLVGGTFDARANGFWSCRKSG--QNCPPGVRSISFNSAKDVIISGVKSMNS 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 166 KFFHIALLSVKNIRMSGLKISAPSNSPNTDGIHIERSSGIQIMDTHISTGDDCISIGQGNDNVDIARVQCGPGHGMSVGS 245
Cdd:PLN02155  167 QVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGS 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 246 LGRYAGEGDVTRVHVRDMTFTGTMNGVRIKTWENsPSKSHAAHMVFENMVMKDVQNPIIIDQKYCPYYN-CEHKYmSGVT 324
Cdd:PLN02155  247 LAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEgCPNEY-SGVK 324

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1916570230 325 IQDIQFKNIKGTATTPVAVLLRC--GVPCQGLVLQDVDLRYKGQGGTSTKCENAKAKYVGYQFPKPC 389
Cdd:PLN02155  325 ISQVTYKNIQGTSATQEAMKLVCskSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSC 391
PLN02793 PLN02793
Probable polygalacturonase
 25-389 1.63e-89

Probable polygalacturonase


Pssm-ID: 215426 [Multi-domain]  Cd Length: 443  Bit Score: 277.15  E-value: 1.63e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  25 VINVKNYGAQGNGVNDDSKPLMAAWKAACGSAGAVTMVVTPG-TYYIGPVQFHGPCKAStLTFQLQGTLKAATD------ 97
Cdd:PLN02793   52 VLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGyTFLVRPIDLGGPCKAK-LTLQISGTIIAPKDpdvwkg 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  98 LTRfgNDWIEFGWVNGLTV-AGGVIDGQGAASWPfNKCPVRKD--CKVLPTSVLFVNNQNTVVRDVTSVNPKFFHIALLS 174
Cdd:PLN02793  131 LNP--RKWLYFHGVNHLTVeGGGTVNGMGHEWWA-QSCKINHTnpCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTN 207

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 175 VKNIRMSGLKISAPSNSPNTDGIHIERSSGIQIMDTHISTGDDCISIGQGNDNVDIARVQCGPGHGMSVGSLGRYAGEGD 254
Cdd:PLN02793  208 CRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSE 287

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 255 VTRVHVRDMTFTGTMNGVRIKTWENspSKSHAAHMVFENMVMKDVQNPIIIDQKYCPYYNCEHKYMSGVTIQDIQFKNIK 334
Cdd:PLN02793  288 VRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIK 365

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1916570230 335 GTATTPVAVLLRCG--VPCQGLVLQDVDLRYKGQGGTSTKCENAKAKYVGYQFPKPC 389
Cdd:PLN02793  366 GTSATEEAIKFACSdsSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPC 422
PLN03010 PLN03010
polygalacturonase
 27-379 1.45e-83

polygalacturonase


Pssm-ID: 215540 [Multi-domain]  Cd Length: 409  Bit Score: 260.70  E-value: 1.45e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  27 NVKNYGAQGNGVNDDSKPLMAAWKAACGSAGAVTMVVTPG--TYYIGPVQFHGPCKASTLTFQLQGTLKAATDLTRFGND 104
Cdd:PLN03010   48 NVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSgkTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSNIVAWSNP 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 105 ----WIEFGWVNGLTVAG-GVIDGQGAASWpfnkcpvrkdckvlpTSVLFVNNQNTVVRDVTSVNPKFFHIALLSVKNIR 179
Cdd:PLN03010  128 ksqmWISFSTVSGLMIDGsGTIDGRGSSFW---------------EALHISKCDNLTINGITSIDSPKNHISIKTCNYVA 192

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 180 MSGLKISAPSNSPNTDGIHIERSSGIQIMDTHISTGDDCISIGQGNDNVDIARVQCGPGHGMSVGSLGRYAGEGDVTRVH 259
Cdd:PLN03010  193 ISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVH 272

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 260 VRDMTFTGTMNGVRIKTWENspSKSHAAHMVFENMVMKDVQNPIIIDQKYCPYYNCEHKYMSGVTIQDIQFKNIKGTATT 339
Cdd:PLN03010  273 VTHCTFNQTTNGARIKTWQG--GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSN 350

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 1916570230 340 PVAVLLRCG--VPCQGLVLQDVDLRYKGQGGTSTKCENAKAK 379
Cdd:PLN03010  351 ENAITLKCSaiTHCKDVVMDDIDVTMENGEKPKVECQNVEGE 392
Glyco_hydro_28 pfam00295
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ...
 81-379 3.67e-76

Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.


Pssm-ID: 425588 [Multi-domain]  Cd Length: 319  Bit Score: 238.44  E-value: 3.67e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  81 ASTLTFQLQGTLKAATDLTRFGNDWIEFGWVNGLTVAGGVIDGQGAASWPfNKCPVRKDCKVLPTSVLFVNNQNTVVRDV 160
Cdd:pfam00295  21 TSGTTVTFEGTTTFGYKEWNGKLIWISGSSITVTGASGGTIDGQGQRWWD-GKGTKKNGGKKKPKFIYIHKVKNSKITGL 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 161 TSVNPKFFHIALLSVKNIRMSGLKISAP---SNSPNTDGIHIERSSGIQIMDTHISTGDDCISIGQGNdNVDIARVQCGP 237
Cdd:pfam00295 100 NIKNSPVFHFSVQSGTDLTISDITIDNSagdSNGHNTDGFDVGSSSGVTISNTNIYNQDDCIAINSGS-NISITNVTCGG 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 238 GHGMSVGSLGRYaGEGDVTRVHVRDMTFTGTMNGVRIKTWENSPSKshAAHMVFENMVMKDV-QNPIIIDQKYCPYYNCe 316
Cdd:pfam00295 179 GHGISIGSVGGR-SDNTVKNVTVKDSTVVNSDNGVRIKTISGATGT--VSNITYENIVLSNIsKYGIVIDQDYENGEPT- 254

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1916570230 317 HKYMSGVTIQDIQFKNIKGT-ATTPVAVLLRCGV-PCQGLVLQDVDLRYkgqGGTSTKCENAKAK 379
Cdd:pfam00295 255 GKPTSGVKISDITFKNVTGTvASSATAVYLLCGDgSCSGWTWSGVNITG---GKSTSKCKNVPSG 316
PLN03003 PLN03003
Probable polygalacturonase At3g15720
 9-367 3.53e-65

Probable polygalacturonase At3g15720


Pssm-ID: 178580 [Multi-domain]  Cd Length: 456  Bit Score: 214.54  E-value: 3.53e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230   9 LVVVAIFMSISAsgaavINVKNYGAQGNGVNDDSKPLMAAWKAACGSAGAVTMVVTPG-TYYIGPVQFHGPCKASTLTFQ 87
Cdd:PLN03003   12 LFFLQIFTSSNA-----LDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGmTFMLQPLKFQGSCKSTPVFVQ 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  88 LQGTLKAATDLTRFGN--DWIEFGWVNGLTVAG-GVIDGQGAASWPFNKCPvrkdckvlPTSVLFVNNQNTVVRDVTSVN 164
Cdd:PLN03003   87 MLGKLVAPSKGNWKGDkdQWILFTDIEGLVIEGdGEINGQGSSWWEHKGSR--------PTALKFRSCNNLRLSGLTHLD 158

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 165 PKFFHIALLSVKNIRMSGLKISAPSNSPNTDGIHIERSSGIQIMDTHISTGDDCISIGQGNDNVDIARVQCGPGHGMSVG 244
Cdd:PLN03003  159 SPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIG 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 245 SLGRYAGEGDVTRVHVRDMTFTGTMNGVRIKTWENspSKSHAAHMVFENMVMKDVQNPIIIDQKY--CPYYNCEHKYMSG 322
Cdd:PLN03003  239 SLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG--GSGYARMITFNGITLDNVENPIIIDQFYngGDSDNAKDRKSSA 316

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 1916570230 323 VTIQDIQFKNIKGTATTPVAVLLRCG--VPCQGLVLQDVDLRYKGQG 367
Cdd:PLN03003  317 VEVSKVVFSNFIGTSKSEYGVDFRCSerVPCTEIFLRDMKIETASSG 363
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
23-361 2.36e-50

Polygalacturonase [Carbohydrate transport and metabolism];


Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 173.08  E-value: 2.36e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  23 AAVINVKNYGAQGNGVNDDSKPLMAAWkAACGSAGAVTMVVTPGTYYIGPVQFHgpckaSTLTFQLQ--GTLKAATDL-- 98
Cdd:COG5434     7 AKTFNITDFGAKGDGKTLNTAAIQKAI-DACAAAGGGTVLVPAGTYLTGPIFLK-----SNVTLHLEkgATLLGSTDPad 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  99 -----TRFGNDWIEFGW-------VNGLTVAG-GVIDGQGAASWPFNK-------CPVRKDCKVLPTSVLFVNNQNTVVR 158
Cdd:COG5434    81 yplveTRWEGGELKGYSaliyaenAENIAITGeGTIDGNGDAWWPWKKearqsgwVPVGAYDYLRPRLIQLKNCKNVLLE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 159 DVTSVNPKFFHIALLSVKNIRMSGLKISAPSNSPNTDGIHIERSSGIQIMDTHISTGDDCISI--GQGND--------NV 228
Cdd:COG5434   161 GVTLRNSPFWTIHPLGCENVTVDGVTIDNPADAPNTDGIDPDSCRNVLIENCYIDTGDDAIAIksGRDADgrrnrpteNI 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 229 DIARVQCGPGHG-MSVGSlgryagE--GDVTRVHVRDMTFTGTMNGVRIKTweNSPSKSHAAHMVFENMVMKDV-QNPII 304
Cdd:COG5434   241 VIRNCTFRSGHGgIVIGS------EtsGGVRNVTVENCTFDGTDRGLRIKS--RRGRGGVVENITIRNITMRNVkGTPIF 312

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 305 IDqkycPYYNCEHKYMSGvTIQDIQFKNIKGTATTPVAVLLrcGVP---CQGLVLQDVDL 361
Cdd:COG5434   313 IN----LFYEGDRGGPTP-TFRNITISNVTATGAKSAILIA--GLPeapIENITLENVTI 365
Pectate_lyase_3 pfam12708
Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure ...
 26-222 4.45e-07

Pectate lyase superfamily protein; This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.


Pssm-ID: 403800 [Multi-domain]  Cd Length: 213  Bit Score: 50.01  E-value: 4.45e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  26 INVKNYGAQGNGVNDDSKPLMAAWKAACGSAGAVTMVVTPGTYYI-GPVQFHGPCkastltfQLQG------TLKAATDl 98
Cdd:pfam12708   2 RNVKDYGAKGDGVTDDTAAIQKAIDDGGATTTPAVVYFPPGTYLVsSPIILYSGT-------VLVGdgnnppVLKAAPN- 73

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230  99 trFGNDWIEFGWVNGLTVAGGVidgqgaaswpfnkcpvrkdckvlPTSVLFVNNQNtVVRDVTSVNPKFFHIALLSVKNI 178
Cdd:pfam12708  74 --FVGAGLIDGDPYTGGGPGII-----------------------NTNNFYRQIRN-LVIDITGVAPGATGIHWQVAQAT 127

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 1916570230 179 RMSGLKISAPSNSPNT-DGIHIERSSGIQIMDTHISTGDDCISIG 222
Cdd:pfam12708 128 SLQNVVFEMSFGSGNKhQGIFMENGSGGFLNDLVFNGGDIGIAVG 172
NosD COG3420
Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion ...
 147-228 1.90e-03

Nitrous oxide reductase accessory protein NosD, contains tandem CASH domains [Inorganic ion transport and metabolism];


Pssm-ID: 442646 [Multi-domain]  Cd Length: 343  Bit Score: 39.90  E-value: 1.90e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1916570230 147 VLFVNNQNTVVRDVTSVNPkFFHIALLSVKNIRMSGLKISAPSNSPNT--DGIHIERSSGIQIMDTHISTGDDCISIGQG 224
Cdd:COG3420   101 IYVRGADNAVIENNRIENN-LFGIYLEGSDNNVIRNNTISGNRDLRADrgNGIHLWNSPGNVIEGNTISGGRDGIYLEFS 179


                  ....
gi 1916570230 225 NDNV 228
Cdd:COG3420   180 DNNV 183
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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