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Conserved domains on  [gi|1901085586|emb|CAD5323017|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11459648)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
213-312 3.60e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


:

Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 3.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 213 FLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHsMVLAIskreseDSGITEAYGAIADC 292
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALEL-----DP-DNADALNNLGLLLLEQGRYDEAIALE-KALKL------DPNNAEALLNLAEL 68

                          90       100
                  ....*....|....*....|
gi 1901085586 293 YTELGDLEKAGKFYDTYIAR 312
Cdd:COG3063    69 LLELGDYDEALAYLERALEL 88
 
Name Accession Description Interval E-value
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
213-312 3.60e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 3.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 213 FLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHsMVLAIskreseDSGITEAYGAIADC 292
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALEL-----DP-DNADALNNLGLLLLEQGRYDEAIALE-KALKL------DPNNAEALLNLAEL 68

                          90       100
                  ....*....|....*....|
gi 1901085586 293 YTELGDLEKAGKFYDTYIAR 312
Cdd:COG3063    69 LLELGDYDEALAYLERALEL 88
TPR_12 pfam13424
Tetratricopeptide repeat;
244-314 1.11e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.84  E-value: 1.11e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901085586 244 KAARGLGASLQRQGKYREAIQYHSMVLAISKRESEDS--GITEAYGAIADCYTELGDLEKAGKFYDTYIARLE 314
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 238-312 5.83e-05

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 42.28  E-value: 5.83e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1901085586 238 DPTEeKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESedsgitEAYGAIADCYTELGDLEKAGKFYDTYIAR 312
Cdd:TIGR02552  47 DPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP------RPYFHAAECLLALGEPESALKALDLAIEI 114
 
Name Accession Description Interval E-value
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
213-312 3.60e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.47  E-value: 3.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 213 FLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHsMVLAIskreseDSGITEAYGAIADC 292
Cdd:COG3063     2 YLKLGDLEEAEEYYEKALEL-----DP-DNADALNNLGLLLLEQGRYDEAIALE-KALKL------DPNNAEALLNLAEL 68

                          90       100
                  ....*....|....*....|
gi 1901085586 293 YTELGDLEKAGKFYDTYIAR 312
Cdd:COG3063    69 LLELGDYDEALAYLERALEL 88
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
210-311 8.94e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 49.23  E-value: 8.94e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 210 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 289
Cdd:COG0457    15 GLAYRRLGRYEEAIEDYEKALEL-----DP-DDAEALYNLGLAYLRLGRYEEALADYEQALEL------DPDDAEALNNL 82

                          90       100
                  ....*....|....*....|..
gi 1901085586 290 ADCYTELGDLEKAGKFYDTYIA 311
Cdd:COG0457    83 GLALQALGRYEEALEDYDKALE 104
TPR_12 pfam13424
Tetratricopeptide repeat;
244-314 1.11e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.84  E-value: 1.11e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1901085586 244 KAARGLGASLQRQGKYREAIQYHSMVLAISKRESEDS--GITEAYGAIADCYTELGDLEKAGKFYDTYIARLE 314
Cdd:pfam13424   4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 204-307 3.72e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.42  E-value: 3.72e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 204 ISKLKTGKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESedsgit 283
Cdd:COG2956     9 LGWYFKGLNYLLNGQPDKAIDLLEEALEL-----DP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRA------ 76

                          90       100
                  ....*....|....*....|....
gi 1901085586 284 EAYGAIADCYTELGDLEKAGKFYD 307
Cdd:COG2956    77 EALLELAQDYLKAGLLDRAEELLE 100
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 211-312 4.06e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.98  E-value: 4.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 211 KTFLRNQEPEKAYTEFKialELAQSLKDPTEEKKAARGLGASLQRQGKYREAIQYHsmvLAISKRESEDSGITEAYGAIA 290
Cdd:COG1729     1 KALLKAGDYDEAIAAFK---AFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAF---EKLLKRYPDSPKAPDALLKLG 74

                          90       100
                  ....*....|....*....|..
gi 1901085586 291 DCYTELGDLEKAGKFYDTYIAR 312
Cdd:COG1729    75 LSYLELGDYDKARATLEELIKK 96
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 207-312 4.79e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 45.57  E-value: 4.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 207 LKTGKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESEdsgiteAY 286
Cdd:COG4783     8 YALAQALLLAGDYDEAEALLEKALEL-----DP-DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE------AR 75

                          90       100
                  ....*....|....*....|....*.
gi 1901085586 287 GAIADCYTELGDLEKAGKFYDTYIAR 312
Cdd:COG4783    76 LNLGLALLKAGDYDEALALLEKALKL 101
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
210-311 4.96e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.92  E-value: 4.96e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 210 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 289
Cdd:COG0457    49 GLAYLRLGRYEEALADYEQALEL-----DP-DDAEALNNLGLALQALGRYEEALEDYDKALEL------DPDDAEALYNL 116

                          90       100
                  ....*....|....*....|..
gi 1901085586 290 ADCYTELGDLEKAGKFYDTYIA 311
Cdd:COG0457   117 GLALLELGRYDEAIEAYERALE 138
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
210-314 5.06e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.92  E-value: 5.06e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 210 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 289
Cdd:COG0457    83 GLALQALGRYEEALEDYDKALEL-----DP-DDAEALYNLGLALLELGRYDEAIEAYERALEL------DPDDADALYNL 150

                          90       100
                  ....*....|....*....|....*
gi 1901085586 290 ADCYTELGDLEKAGKFYDTYIARLE 314
Cdd:COG0457   151 GIALEKLGRYEEALELLEKLEAAAL 175
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
245-311 1.24e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.77  E-value: 1.24e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901085586 245 AARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAIADCYTELGDLEKAGKFYDTYIA 311
Cdd:COG0457    10 AYNNLGLAYRRLGRYEEAIEDYEKALEL------DPDDAEALYNLGLAYLRLGRYEEALADYEQALE 70
TPR_12 pfam13424
Tetratricopeptide repeat;
210-275 1.41e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.37  E-value: 1.41e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1901085586 210 GKTFLRNQEPEKAYTEFKIALELAQSLKDPTEEKKAA--RGLGASLQRQGKYREAIQYHSMVLAISKR 275
Cdd:pfam13424  10 AAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATtlLNLGRLYLELGRYEEALELLERALALAEK 77
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 210-312 1.51e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 1.51e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 210 GKTFLRNQEPEKAYTEFKIALELaqslkDPTEEKkAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 289
Cdd:COG2956   151 AELYLEQGDYDEAIEALEKALKL-----DPDCAR-ALLLLAELYLEQGDYEEAIAALERALEQ------DPDYLPALPRL 218

                          90       100
                  ....*....|....*....|...
gi 1901085586 290 ADCYTELGDLEKAGKFYDTYIAR 312
Cdd:COG2956   219 AELYEKLGDPEEALELLRKALEL 241
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 210-312 2.37e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 43.64  E-value: 2.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 210 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESedsgitEAYGAI 289
Cdd:COG4783    45 GEILLQLGDLDEAIVLLHEALEL-----DP-DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHP------EAYLRL 112

                          90       100
                  ....*....|....*....|...
gi 1901085586 290 ADCYTELGDLEKAGKFYDTYIAR 312
Cdd:COG4783   113 ARAYRALGRPDEAIAALEKALEL 135
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 195-311 2.93e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.72  E-value: 2.93e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 195 IVEPKKQELISKLKTGKTFLRNQEPEKAYTEFKIALELAQslkdptEEKKAARGLGASLQRQGKYREAIQYHSMVLAISK 274
Cdd:COG2956    68 LLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDP------DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1901085586 275 RESedsgitEAYGAIADCYTELGDLEKAGKFYDTYIA 311
Cdd:COG2956   142 ENA------HAYCELAELYLEQGDYDEAIEALEKALK 172
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 131-311 5.64e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.60  E-value: 5.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 131 LLLVALIGATVGGLLARQRKGELQRLNEQLRQINAALRRQAKIEsYAPSlsYAPVGARIpdseiivepkkqelisklktG 210
Cdd:COG3914    63 AAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALA-LNPD--NAEALFNL--------------------G 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 211 KTFLRNQEPEKAYTEFKIALELAQSLKDpteekkAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAIA 290
Cdd:COG3914   120 NLLLALGRLEEALAALRRALALNPDFAE------AYLNLGEALRRLGRLEEAIAALRRALEL------DPDNAEALNNLG 187

                         170       180
                  ....*....|....*....|.
gi 1901085586 291 DCYTELGDLEKAGKFYDTYIA 311
Cdd:COG3914   188 NALQDLGRLEEAIAAYRRALE 208
LcrH_SycD TIGR02552
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ...
 238-312 5.83e-05

type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.


Pssm-ID: 274197 [Multi-domain]  Cd Length: 135  Bit Score: 42.28  E-value: 5.83e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1901085586 238 DPTEeKKAARGLGASLQRQGKYREAIQYHSMVLAISKRESedsgitEAYGAIADCYTELGDLEKAGKFYDTYIAR 312
Cdd:TIGR02552  47 DPYN-SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP------RPYFHAAECLLALGEPESALKALDLAIEI 114
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 210-316 1.08e-04

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.53  E-value: 1.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 210 GKTFLRNQEPEKAYTEFKIALELaqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAI 289
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKALRL-----DP-DNADALLDLAEALLAAGDTEEAEELLERALAL------DPDNPEALYLL 91

                          90       100
                  ....*....|....*....|....*..
gi 1901085586 290 ADCYTELGDLEKAGKFYDTYIARLETD 316
Cdd:COG4235    92 GLAAFQQGDYAEAIAAWQKLLALLPAD 118
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 153-312 2.40e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 2.40e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 153 LQRLNEQLRQINAALRRQAKIESYAPSLSYAPVGARIPDSEIIVEPKKQELISKLKTGKTFLRNQEPEKAYTEFKIALEL 232
Cdd:COG5010     4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 233 aqslkDPtEEKKAARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAIADCYTELGDLEKAGKFYDTYIAR 312
Cdd:COG5010    84 -----DP-NNPELYYNLALLYSRSGDKDEAKEYYEKALAL------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 165-311 4.18e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 38.82  E-value: 4.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901085586 165 AALRRQAKIESYAPSLSYAPVGARIPDSEIIVEPKKQELISKLkTGKTFLRNQEPEKAYTEFKIALELAQSLKDPTEEKK 244
Cdd:COG3914     1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGL-ALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAA 79

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1901085586 245 AARGLGASLQRQGKYREAIQYHSMVLAIskreseDSGITEAYGAIADCYTELGDLEKAGKFYDTYIA 311
Cdd:COG3914    80 LLELAALLLQALGRYEEALALYRRALAL------NPDNAEALFNLGNLLLALGRLEEALAALRRALA 140
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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