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Conserved domains on  [gi|1901037614|emb|CAD5320358|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

mTERF domain-containing protein( domain architecture ID 139977)

mTERF (mitochondrial transcription termination factor) domain-containing protein may function as a transcription termination factor that binds promoter DNA and regulates mitochondrial replication and transcription

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
mTERF super family cl47744
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 62-291 4.25e-35

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


The actual alignment was detected with superfamily member pfam02536:

Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 128.87  E-value: 4.25e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614  62 LELMGIDSG---KALSLNP-CLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILT--------------------- 116
Cdd:pfam02536   4 LESLGVTDSqisKILTRYPpVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGfkleetmstsvdflkeigvdk 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614 117 SDVRTEL--YPVFMFLSN------------DLHVPENAFRRVIKKCPRLLISSVEDQLKPALF-----YLQRLGL--KDL 175
Cdd:pfam02536  84 SSIGGALrsWPSILGMRVgnniknnveylrELGVPQKLLARLLISRPQLLALDLVYLMKPKTFeekveFLKELGFsvEDV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614 176 EALAYQDPILLVSSVEHTLI-----------------------------------PKLRFLESIGFSRPEAIGMILRCPA 220
Cdd:pfam02536 164 WKIIKKCPEILGLSIEKKLKkkieflkkcglseeelprvikkypqilslsertilNRVEFLLGLGFSKEEVAKMVKRFPQ 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901037614 221 LFTFSIENnFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFE 291
Cdd:pfam02536 244 LLGLSIEV-LKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSDERFL 313
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 62-291 4.25e-35

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 128.87  E-value: 4.25e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614  62 LELMGIDSG---KALSLNP-CLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILT--------------------- 116
Cdd:pfam02536   4 LESLGVTDSqisKILTRYPpVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGfkleetmstsvdflkeigvdk 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614 117 SDVRTEL--YPVFMFLSN------------DLHVPENAFRRVIKKCPRLLISSVEDQLKPALF-----YLQRLGL--KDL 175
Cdd:pfam02536  84 SSIGGALrsWPSILGMRVgnniknnveylrELGVPQKLLARLLISRPQLLALDLVYLMKPKTFeekveFLKELGFsvEDV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614 176 EALAYQDPILLVSSVEHTLI-----------------------------------PKLRFLESIGFSRPEAIGMILRCPA 220
Cdd:pfam02536 164 WKIIKKCPEILGLSIEKKLKkkieflkkcglseeelprvikkypqilslsertilNRVEFLLGLGFSKEEVAKMVKRFPQ 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901037614 221 LFTFSIENnFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFE 291
Cdd:pfam02536 244 LLGLSIEV-LKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSDERFL 313
PLN03196 PLN03196
MOC1-like protein; Provisional
 85-295 1.46e-24

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 102.87  E-value: 1.46e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614  85 DSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPAL 164
Cdd:PLN03196  266 ETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVE 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614 165 FYLQRlglkdlealayqdpillvssvehtlipklrflesiGFSRPEAIGMILRCPALFTFSIENnFKPKLDYFMSEIKGK 244
Cdd:PLN03196  346 FLRGR-----------------------------------GFSAQDVAKMVVRCPQILALNLEI-MKPSLEFFKKEMKRP 389

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1901037614 245 LENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLLT 295
Cdd:PLN03196  390 LKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQRMS 440
 
Name Accession Description Interval E-value
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 62-291 4.25e-35

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 128.87  E-value: 4.25e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614  62 LELMGIDSG---KALSLNP-CLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILT--------------------- 116
Cdd:pfam02536   4 LESLGVTDSqisKILTRYPpVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGfkleetmstsvdflkeigvdk 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614 117 SDVRTEL--YPVFMFLSN------------DLHVPENAFRRVIKKCPRLLISSVEDQLKPALF-----YLQRLGL--KDL 175
Cdd:pfam02536  84 SSIGGALrsWPSILGMRVgnniknnveylrELGVPQKLLARLLISRPQLLALDLVYLMKPKTFeekveFLKELGFsvEDV 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614 176 EALAYQDPILLVSSVEHTLI-----------------------------------PKLRFLESIGFSRPEAIGMILRCPA 220
Cdd:pfam02536 164 WKIIKKCPEILGLSIEKKLKkkieflkkcglseeelprvikkypqilslsertilNRVEFLLGLGFSKEEVAKMVKRFPQ 243

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1901037614 221 LFTFSIENnFKPKLDYFMSEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFE 291
Cdd:pfam02536 244 LLGLSIEV-LKPKLEFLVKEMKWPLKEVVEYPRVFGYSLEKRIKPRIKALVSKGLECSLSWMLACSDERFL 313
PLN03196 PLN03196
MOC1-like protein; Provisional
 85-295 1.46e-24

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 102.87  E-value: 1.46e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614  85 DSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPAL 164
Cdd:PLN03196  266 ETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKIDPEDFGRVIEKLPQIVSLNRNVALKHVE 345

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614 165 FYLQRlglkdlealayqdpillvssvehtlipklrflesiGFSRPEAIGMILRCPALFTFSIENnFKPKLDYFMSEIKGK 244
Cdd:PLN03196  346 FLRGR-----------------------------------GFSAQDVAKMVVRCPQILALNLEI-MKPSLEFFKKEMKRP 389

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1901037614 245 LENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLLT 295
Cdd:PLN03196  390 LKELVEFPAYFTYGLESRIKPRYERVAKKGIKCSLAWFLNCSDDKFEQRMS 440
mTERF pfam02536
mTERF; This family contains one sequence of known function Human mitochondrial transcription ...
 166-266 2.10e-07

mTERF; This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerization role as in other leucine zippers.


Pssm-ID: 460581 [Multi-domain]  Cd Length: 313  Bit Score: 51.45  E-value: 2.10e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614 166 YLQRLGLKD--LEALAYQDPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSE--- 240
Cdd:pfam02536   3 LLESLGVTDsqISKILTRYPPVLHADVEKDLAPKLQFLLSLGASSSDLGKILSKYPRILGFKLEETMSTSVDFLKEIgvd 82

                          90       100
                  ....*....|....*....|....*.
gi 1901037614 241 IKGKLENLKEFPQYFAFSLEKRIKPR 266
Cdd:pfam02536  83 KSSIGGALRSWPSILGMRVGNNIKNN 108
PLN03196 PLN03196
MOC1-like protein; Provisional
 90-265 4.20e-05

MOC1-like protein; Provisional


Pssm-ID: 215628 [Multi-domain]  Cd Length: 487  Bit Score: 44.70  E-value: 4.20e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614  90 VLHFLQSKGIYPN-----DLPrilgmcpkiLTSDVRTELypvFMFLSN-DLHVPEnafrrvIKKCPRLLISSVEDQLKPA 163
Cdd:PLN03196   66 VLDFLRGIGIDPDeldglELP---------STVDVMRER---VEFLHKlGLTIED------INEYPLVLGCSVKKNMIPV 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1901037614 164 LFYLQRLGLK--DLEALAYQDPILLVSSVEHTLIPKLRFLE------------------------------------SIG 205
Cdd:PLN03196  128 LDYLEKLGVTrsSLPELLRRYPQVLHASVVVDLAPVVKYLQgldvkrqdiprvlerypellgfklegtmstsvaylvSIG 207

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1901037614 206 FSRPEAIGMILRCPALFTFSIENNFKPKLDYFMS-----EIKGKLenLKEFPQYFAFSLEKRIKP 265
Cdd:PLN03196  208 VAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESlglprLAVARI--LEKRPYILGFDLEETVKP 270
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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