|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
272-556 |
6.15e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.05 E-value: 6.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 272 KKHREMESKEIYAQRQLLLNDIALLRGREAELKERIETFELTQKLQEEKIKSEAEALERREQNLKNIEDTYDQKLKTEL- 350
Cdd:COG1196 213 ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYe 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 351 -----------LKYQLELKDDYITRTNKLLEEERKNKEKTIHLQEELTVINSKKEELSKSVKHMKEVELELEsvKAQFLA 419
Cdd:COG1196 293 llaelarleqdIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE--EALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 420 ISKQNHLLNEKVREMSDYSQLKEEKVELQAQNKLLKLQLEETRNENLRLLDRITqpppELVIFQKELQKTEKAMELEHKD 499
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE----ELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 28865720 500 FETHRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLKQTQIALENE 556
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| LisH_2 |
pfam16045 |
LisH; |
74-100 |
9.52e-11 |
|
LisH;
Pssm-ID: 464992 Cd Length: 28 Bit Score: 57.09 E-value: 9.52e-11
10 20
....*....|....*....|....*..
gi 28865720 74 NSLVADHLQRCGYEYSLSVFFPESGLA 100
Cdd:pfam16045 2 NSLIAEYLQSQGYNYTLSVFLPESGLA 28
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
192-555 |
5.66e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 5.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 192 KLESLETKLNEYKKEVQhqlqvemchKLKYFREAEITKVKMEERRKYEKELAEFQNEFertcqAKNEALISQEKNSLERI 271
Cdd:TIGR04523 282 KIKELEKQLNQLKSEIS---------DLNNQKEQDWNKELKSELKNQEKKLEEIQNQI-----SQNNKIISQLNEQISQL 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 272 KK---HREMESKEIYAQRQLLLNDIALLRGREAELKERIETFELTQKLQEEKIKSEAEALERREQNLKNIEDTYD----- 343
Cdd:TIGR04523 348 KKeltNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKElleke 427
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 344 -QKLKTELLKYQLELKDdyITRTNKLLEEERKNKEKTI-HLQEELTV----INSKKEELSKSVKHMKEVELELESVKAQF 417
Cdd:TIGR04523 428 iERLKETIIKNNSEIKD--LTNQDSVKELIIKNLDNTReSLETQLKVlsrsINKIKQNLEQKQKELKSKEKELKKLNEEK 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 418 LAISKQNHLLNEKVREM-SDYSQLKEEKVELQAQ-----NKLLKLQLEETRNENLRLLDRITQPPPELVIFQKELQKTEK 491
Cdd:TIGR04523 506 KELEEKVKDLTKKISSLkEKIEKLESEKKEKESKisdleDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQE 585
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 28865720 492 AMELEHKDFETHRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLKQTQIALEN 555
Cdd:TIGR04523 586 EKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQ 649
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
270-548 |
3.06e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 3.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 270 RIKKHREMESKEIYAQRQLLLNDIALLRGREAELKERI-----ETFELTQKLQEEK-----IKSEAEALERREQNLKN-I 338
Cdd:TIGR02169 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELrrienRLDELSQELSDASrkigeIEKEIEQLEQEEEKLKErL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 339 ED--TYDQKLKTELLKYQLELKDdyitrtnklLEEERKNKEKTIH-LQEELtviNSKKEELSKSvkHMKEVELELESVKA 415
Cdd:TIGR02169 740 EEleEDLSSLEQEIENVKSELKE---------LEARIEELEEDLHkLEEAL---NDLEARLSHS--RIPEIQAELSKLEE 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 416 QFLAISKQ-NHLLNEKVREMSDYSQLKEEKVELQAQNKLLKLQLEETRNENLRLLDRITQPPPELvifqKELQKTEKAME 494
Cdd:TIGR02169 806 EVSRIEARlREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEEL----EELEAALRDLE 881
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 28865720 495 LEHKDFETHRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLKQ 548
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
225-537 |
4.81e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 4.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 225 AEITKVKmEERRKYEKELAEFQNEFERTcqaknEALISQEKNSLERIKKHREMESKEIYAQRQLLLNDIALLRGREAELK 304
Cdd:TIGR02168 165 AGISKYK-ERRKETERKLERTRENLDRL-----EDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELR 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 305 ERIETFELTQKLQEEKIKSEAEALERREQNLKNIEDtYDQKLKTELLKYQLEL-------------------KDDYITRT 365
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRL-EVSELEEEIEELQKELyalaneisrleqqkqilreRLANLERQ 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 366 NKLLEEER-KNKEKTIHLQEELTVINSKKEELSKSVKHMKEvelELESVKAQFLAISKQNHLLNEKVREM-SDYSQLKEE 443
Cdd:TIGR02168 318 LEELEAQLeELESKLDELAEELAELEEKLEELKEELESLEA---ELEELEAELEELESRLEELEEQLETLrSKVAQLELQ 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 444 KVELQAQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQKELQKT---EKAMELEH--KDFETHRQALEKQLQSEIENS 518
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAeleELEEELEElqEELERLEEALEELREELEEAE 474
|
330
....*....|....*....
gi 28865720 519 AQLRTQIAEYDASVKRLTV 537
Cdd:TIGR02168 475 QALDAAERELAQLQARLDS 493
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
234-542 |
1.73e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 1.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 234 ERRKYEKELAEFQNEFERTCQAKNEALIS---------QEKNSLERIKKHREMESKEIYAQRQLLLNDIALLRGREAELK 304
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAElrkeleeleEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 305 ERIETFELTQKLQEEKIKSEAEALERREQNLKNIEDTYDQ-KLKTELLKYQLELKDDYITRTNKL---LEEERKNKEKTI 380
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQlKEELKALREALDELRAELTLLNEEaanLRERLESLERRI 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 381 H-LQEELTVINSKKEELSksvKHMKEVELELESVKAQFLAISKQ-NHLLNEKVREMSDYSQLKEEKVELQAQNKllklQL 458
Cdd:TIGR02168 834 AaTERRLEDLEEQIEELS---EDIESLAAEIEELEELIEELESElEALLNERASLEEALALLRSELEELSEELR----EL 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 459 EETRNENLRLLDRITQpppELVIFQKELQKTEkaMELEHKdFETHRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQ 538
Cdd:TIGR02168 907 ESKRSELRRELEELRE---KLAQLELRLEGLE--VRIDNL-QERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
....
gi 28865720 539 VAEL 542
Cdd:TIGR02168 981 IKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
297-550 |
2.22e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 297 RGREAELK--------ERIE--TFELTQKLqeEKIKSEAEALERreqnlkniedtYdQKLKTELLKYQLELkddYITRTN 366
Cdd:TIGR02168 173 RRKETERKlertrenlDRLEdiLNELERQL--KSLERQAEKAER-----------Y-KELKAELRELELAL---LVLRLE 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 367 KLLEEERKNKEKTIHLQEELTVINSKKEELSKSVKhmkEVELELESVKAQFLAISKQNHLLNEKVREM-SDYSQLKEEKV 445
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLE---ELRLEVSELEEEIEELQKELYALANEISRLeQQKQILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 446 ELQAQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQKELQKTE---KAMELEHKDFETHRQALEKQLQSEIENSAQLR 522
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEaelEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
250 260
....*....|....*....|....*...
gi 28865720 523 TQIAEYDASVKRLTVQVAELKSQLKQTQ 550
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQ 420
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
190-554 |
2.83e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 2.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 190 RSKLESLETKLNEYKKEVQhQLQVEMCHKLKY------FREAEITkVKMEERRKYEKELAEFQNEFE--RTCQAKNEALI 261
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLE-RLRREREKAERYqallkeKREYEGY-ELLKEKEALERQKEAIERQLAslEEELEKLTEEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 262 SQEKNSLERIKKHREMESKEIYA---------QRQL--LLNDIALLRGREAELKERIETFELT-QKLQEE--KIKSEAEA 327
Cdd:TIGR02169 261 SELEKRLEEIEQLLEELNKKIKDlgeeeqlrvKEKIgeLEAEIASLERSIAEKERELEDAEERlAKLEAEidKLLAEIEE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 328 LERREQNLkniedtydQKLKTELLKYQLELKDDYITRTNKLLEEERKNKE---KTIHLQEELTVINSKKEELSKSVKHMK 404
Cdd:TIGR02169 341 LEREIEEE--------RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAEtrdELKDYREKLEKLKREINELKRELDRLQ 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 405 EVELELESVKAQflaiskqnhLLNEKVREMSDYSQLKEEKVELQAQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQK 484
Cdd:TIGR02169 413 EELQRLSEELAD---------LNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 485 ELqkTEKAMELEhkdfethrqALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLKQTQIALE 554
Cdd:TIGR02169 484 EL--SKLQRELA---------EAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIE 542
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
236-550 |
3.29e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.69 E-value: 3.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 236 RKYEKELAEFQNEFERTcqAKNEALISQEKNSLERIKKHR--------------EMESKEIYAQRQLLLNDIALLRGREA 301
Cdd:TIGR02169 170 RKKEKALEELEEVEENI--ERLDLIIDEKRQQLERLRRERekaeryqallkekrEYEGYELLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 302 ELKERIETFeltQKLQEEKIKSEAEALERREQNLKNIEDTYDQK---LKTELLKYQLELKDdyITRTNKLLEEERKNKEK 378
Cdd:TIGR02169 248 SLEEELEKL---TEEISELEKRLEEIEQLLEELNKKIKDLGEEEqlrVKEKIGELEAEIAS--LERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 379 TIHLQEELtvINSKKEELSKSVKHMKEVELELESVKAQFLAISKQNHLLNEKVREMSdySQLKEEKVEL-QAQNKLLKLQ 457
Cdd:TIGR02169 323 RLAKLEAE--IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD--KEFAETRDELkDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 458 LEetRNENLRLLDRITQPPPELVIFQKELQKTEKAMELEHKDFETHRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTV 537
Cdd:TIGR02169 399 RE--INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
330
....*....|...
gi 28865720 538 QVAELKSQLKQTQ 550
Cdd:TIGR02169 477 EYDRVEKELSKLQ 489
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
190-556 |
9.08e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 9.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 190 RSKLESLETKLNEYKKEVQ----HQLQVEMCHKLKYFREAEITKV--KMEERRKYEKELAEFQNEFERTCQAKNEalISQ 263
Cdd:PRK03918 213 SSELPELREELEKLEKEVKeleeLKEEIEELEKELESLEGSKRKLeeKIRELEERIEELKKEIEELEEKVKELKE--LKE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 264 EKNSLERIKKHREMESKEIYAQRQLLLNDIALLRGREAELKERIEtfeltQKLQEEKIKSEAEALERREQNLKNIEDTYD 343
Cdd:PRK03918 291 KAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE-----KEERLEELKKKLKELEKRLEELEERHELYE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 344 Q--KLKTELLKYQLELKDDYITRTNKLLEEERKNKEKtihLQEELTVINSKKEELSKSVKHMKEVELELESVKA------ 415
Cdd:PRK03918 366 EakAKKEELERLKKRLTGLTPEKLEKELEELEKAKEE---IEEEISKITARIGELKKEIKELKKAIEELKKAKGkcpvcg 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 416 QFLAISKQNHLLNEKVREMSDYSQLKEEkvelqAQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQKELQKTEKAMEL 495
Cdd:PRK03918 443 RELTEEHRKELLEEYTAELKRIEKELKE-----IEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNL 517
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28865720 496 EH-----KDFETHRQALEKqLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLKQTQIALENE 556
Cdd:PRK03918 518 EElekkaEEYEKLKEKLIK-LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEEL 582
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
199-562 |
1.64e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 199 KLNEYKKEVQHQLQVE-MCHKLKYFREAEITKVKMEERRKYE---KELAEFQNEFERTCQAKNEALISQEKNSLERIKKH 274
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEeAKKKAEEAKKADEAKKKAEEAKKADeakKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 275 REMESKEIYAQRQLLlndiallrgREAELKERIETFELTQKLQEEKIKSEAEAlERREQNLKNIEDTYDQKLKTELLKYQ 354
Cdd:PTZ00121 1525 DEAKKAEEAKKADEA---------KKAEEKKKADELKKAEELKKAEEKKKAEE-AKKAEEDKNMALRKAEEAKKAEEARI 1594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 355 LELKDDYITRTNKLLEEERKNKEKTIHLQEEltvinSKKEELSKSVKHMKEVELELESVKAQFLAISKQNHLLNEKVREM 434
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL-----KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKK 1669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 435 SDYSQLKEEKVELQAQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQKELQKTE-----KAMELEHKDFETHRQALEK 509
Cdd:PTZ00121 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEeenkiKAEEAKKEAEEDKKKAEEA 1749
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 28865720 510 QLQSEIENSAQLRTQIAEYDASVKRLTVQvAELKSQLKQTQIALENEVYRNPK 562
Cdd:PTZ00121 1750 KKDEEEKKKIAHLKKEEEKKAEEIRKEKE-AVIEEELDEEDEKRRMEVDKKIK 1801
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
191-555 |
1.76e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 191 SKLESLETKLNEYKKEVQhQLQVEMCHKLKYFREAEITKVKMEERRKYEKELA-----EFQNEFERTCQAKNEAL----- 260
Cdd:PRK03918 331 KELEEKEERLEELKKKLK-ELEKRLEELEERHELYEEAKAKKEELERLKKRLTgltpeKLEKELEELEKAKEEIEeeisk 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 261 ISQEKNSLERIKKHR----------------------EMESKEIYAQRQLLLNDIAllrgreaelKERIETFELTQKLQE 318
Cdd:PRK03918 410 ITARIGELKKEIKELkkaieelkkakgkcpvcgreltEEHRKELLEEYTAELKRIE---------KELKEIEEKERKLRK 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 319 EKIKSEAEALERREqnLKNIEDTYDQ--KLKTELLKYQLE-LKDDYitrtnkllEEERKNKEKTIHLQEELTVINSKKEE 395
Cdd:PRK03918 481 ELRELEKVLKKESE--LIKLKELAEQlkELEEKLKKYNLEeLEKKA--------EEYEKLKEKLIKLKGEIKSLKKELEK 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 396 LSKSVKHMKEVELELESVKaqflaiSKQNHLLNE-KVREMSDYSQLKEEKVELQ-AQNKLLKLQLEETRNEnlRLLDRIT 473
Cdd:PRK03918 551 LEELKKKLAELEKKLDELE------EELAELLKElEELGFESVEELEERLKELEpFYNEYLELKDAEKELE--REEKELK 622
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 474 QPPPELVIFQKELQKTEKAMELEHKDFETHRQALEKQLQSEIENS-AQLRTQIAEYDASVKRLTVQVAELKSQLKQTQIA 552
Cdd:PRK03918 623 KLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEyLELSRELAGLRAELEELEKRREEIKKTLEKLKEE 702
|
...
gi 28865720 553 LEN 555
Cdd:PRK03918 703 LEE 705
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
218-560 |
1.94e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.28 E-value: 1.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 218 KLKYFREAEITKVKMEERRKYEKELAEFQNEFERTCQAKNEALISQEKnsleriKKHREMESKEIY-AQRQLLLNDIALL 296
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLK------EKLELEEEYLLYlDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 297 RGREAELKERIETFELTQKLQEEKIKSEAEALERREQNLKNIEDtyDQKLKTELLKYQLELKDDYITRTNKLLEEERKNK 376
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEE--ELKLLAKEEEELKSELLKLERRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 377 EKTIHLQEELTVINSKKEELSKSVKHMKEVELELESVKAQFLAIS-KQNHLLNEKVREMSDYSQLKEEKVELQAQNKLLK 455
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQeKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 456 LQLEETRNENLRLLDRitqpppeLVIFQKELQKTEKAMELEHKDFETHRQALEKQLQSEIENSAQLRTqiaEYDASVKRL 535
Cdd:pfam02463 401 SEEEKEAQLLLELARQ-------LEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLL---KDELELKKS 470
|
330 340
....*....|....*....|....*
gi 28865720 536 TVQVAELKSQLKQTQIALENEVYRN 560
Cdd:pfam02463 471 EDLLKETQLVKLQEQLELLLSRQKL 495
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
191-560 |
2.48e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 2.48e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 191 SKLESLETKLNEYKKEVQHQLQvemchklkyfrEAEITKVKMEERRKYEKELAEFQNEFERTCQAKNEALisQEKNSLER 270
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIK-----------ELEEKEERLEELKKKLKELEKRLEELEERHELYEEAK--AKKEELER 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 271 IKKHR---------------EMESKEIYAQRQLLLNDIALLRGREAELKERIETF------------ELTQKLQEEKIKS 323
Cdd:PRK03918 377 LKKRLtgltpeklekeleelEKAKEEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcgrELTEEHRKELLEE 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 324 EAEALERREQNLKNIEDTyDQKLKTELLKYQLELKDDYITRTNKLLEEERKNkektihLQEELTVINskKEELSKSVKhm 403
Cdd:PRK03918 457 YTAELKRIEKELKEIEEK-ERKLRKELRELEKVLKKESELIKLKELAEQLKE------LEEKLKKYN--LEELEKKAE-- 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 404 kevelELESVKAQFLAISKQNHLLNEKVremsdysqlkEEKVELQAQNKLLKLQLEETRNENLRLLDRITQPPPELVifq 483
Cdd:PRK03918 526 -----EYEKLKEKLIKLKGEIKSLKKEL----------EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESV--- 587
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28865720 484 KELQKTEKAMELEHKDFETHRQAlEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLKQTQIALENEVYRN 560
Cdd:PRK03918 588 EELEERLKELEPFYNEYLELKDA-EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE 663
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
199-444 |
2.56e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.66 E-value: 2.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 199 KLNEYKKEVQHQLQVEMCHKLKYFREAEitKVKMEERRKYEKELAEFQNEFERTCQAKN-EALISQEKNSLERIKKHREm 277
Cdd:pfam17380 354 RQEERKRELERIRQEEIAMEISRMRELE--RLQMERQQKNERVRQELEAARKVKILEEErQRKIQQQKVEMEQIRAEQE- 430
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 278 ESKEIYAQRqlllndiaLLRGREAELkERIETFELTQKLQEEKIKSEAEalERREQNLKNIEDTYDQKLKTELLKYQLEl 357
Cdd:pfam17380 431 EARQREVRR--------LEEERAREM-ERVRLEEQERQQQVERLRQQEE--ERKRKKLELEKEKRDRKRAEEQRRKILE- 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 358 kDDYITRTNKLLEEERKNKEKTIHLQEELTVINSKKEELSKSVKHMKEVEL-ELESVKAQFLAISKQNHLLNEKVREMSD 436
Cdd:pfam17380 499 -KELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMeERRRIQEQMRKATEERSRLEAMEREREM 577
|
....*...
gi 28865720 437 YSQLKEEK 444
Cdd:pfam17380 578 MRQIVESE 585
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
194-548 |
4.77e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.79 E-value: 4.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 194 ESLETKLNEYKKEVQHQLQVEMCHKLKYFR------------------EAEITKVKmEERRKYEKELAEFQNEFERTCQA 255
Cdd:TIGR04523 169 EELENELNLLEKEKLNIQKNIDKIKNKLLKlelllsnlkkkiqknkslESQISELK-KQNNQLKDNIEKKQQEINEKTTE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 256 --KNEALISQEKNSLERIKKHREMESKEIYAQRQLLLNDIALLRGREAELKerietfELTQKLQEEKIKSEAEALERREQ 333
Cdd:TIGR04523 248 isNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEIS------DLNNQKEQDWNKELKSELKNQEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 334 NLKNIEDTYDQKLKTellkyQLELKDDYITRTNKLLEEERKNKEKTIHLQEELTVINSKKEELSKSVKHMKEVELELESV 413
Cdd:TIGR04523 322 KLEEIQNQISQNNKI-----ISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 414 KAQFLAISKQNHLLNEKVREM-SDYSQLKEEKVELQAQNKLLKLQLEETRNENLRLLDRITqpppELVIFQKELQKTEKA 492
Cdd:TIGR04523 397 ESKIQNQEKLNQQKDEQIKKLqQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIK----NLDNTRESLETQLKV 472
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 28865720 493 MELEHKDFETHRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLKQ 548
Cdd:TIGR04523 473 LSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
193-550 |
7.76e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 7.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 193 LESLETKLNEYKKEVQH------QLQVEMCHKLKYFREAEITKVKMEERRKYEKELAEFQNEFERTCQAKNEALISQekn 266
Cdd:TIGR00618 224 LEKELKHLREALQQTQQshayltQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIK--- 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 267 SLERIKKHREMESKEIYAQRQLLLNdiaLLRGREAELKERIETFELTQKLQEekIKSEAEALERREQNLKNIEDTYDQKl 346
Cdd:TIGR00618 301 AVTQIEQQAQRIHTELQSKMRSRAK---LLMKRAAHVKQQSSIEEQRRLLQT--LHSQEIHIRDAHEVATSIREISCQQ- 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 347 kTELLKYQLELKDDYITrtnkLLEEERKNKEKTIHLQEE----LTVINSKKEELSKSVKHMKEVELELESVKAQFLAISK 422
Cdd:TIGR00618 375 -HTLTQHIHTLQQQKTT----LTQKLQSLCKELDILQREqatiDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITC 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 423 QNHLLNEKVREMSDYSQLKEEKVELQAQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQKEL-------------QKT 489
Cdd:TIGR00618 450 TAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPnparqdidnpgplTRR 529
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28865720 490 EKAMELEHKDFETHRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLKQTQ 550
Cdd:TIGR00618 530 MQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQ 590
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
190-521 |
1.24e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 190 RSKLESLETKLNEYKKEVQHQLQVEMCHKLKYFREAEITKVKMEERRKYEKELAEFQNEFERTCQAKnEALISQEKNSLE 269
Cdd:PTZ00121 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE-ELKKAEEKKKAE 1567
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 270 riKKHREMESKEIYAQRQLLLNDIallrgREAELKERIETFELTQKLQEEKIKSEAEALERREQNLKNIEdtydQKLKTE 349
Cdd:PTZ00121 1568 --EAKKAEEDKNMALRKAEEAKKA-----EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEE----EKKKVE 1636
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 350 LLKYQLElkdDYITRTNKLLEEERKNKEKTIHLQEELTVINSKKEELSKSVKHMKEVElelESVKAQFLAISKQNHLLNE 429
Cdd:PTZ00121 1637 QLKKKEA---EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAA---EALKKEAEEAKKAEELKKK 1710
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 430 KVREMSDYSQLKEEKVELQAQNKLLKLQLEETRN--ENLRLLD----RITQPPPELVIFQKELQKTEKAM---ELEHKDf 500
Cdd:PTZ00121 1711 EAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKkaEEAKKDEeekkKIAHLKKEEEKKAEEIRKEKEAVieeELDEED- 1789
|
330 340
....*....|....*....|.
gi 28865720 501 ETHRQALEKQLQSEIENSAQL 521
Cdd:PTZ00121 1790 EKRRMEVDKKIKDIFDNFANI 1810
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
257-535 |
1.30e-05 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 49.06 E-value: 1.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 257 NEALISQEKNS---LERIKKHREMeSKEIYAQRQLLLNDIALLRGREAELKERIETF-ELT------------QKLQE-- 318
Cdd:PRK04778 129 QELLESEEKNReevEQLKDLYREL-RKSLLANRFSFGPALDELEKQLENLEEEFSQFvELTesgdyveareilDQLEEel 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 319 ---EKIKSEAEALERREQN-----LKNIEDTYdQKLKTEllKYQLELKDdyITRTNKLLEEERKNKEKTI------HLQE 384
Cdd:PRK04778 208 aalEQIMEEIPELLKELQTelpdqLQELKAGY-RELVEE--GYHLDHLD--IEKEIQDLKEQIDENLALLeeldldEAEE 282
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 385 ELTVINSKKEEL----SKSVKHMKEVELELESVKAQFLAISKQNHLLNEKVREMSDYSQLKEEkvELQAQNKLLKlQLEE 460
Cdd:PRK04778 283 KNEEIQERIDQLydilEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNES--ELESVRQLEK-QLES 359
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28865720 461 TRNENLRLLDRI---TQPPPELVIFQKELQKTEKAMELEHKDFETHRQALEKQLQSEIENSAQLRTQIAEydasVKRL 535
Cdd:PRK04778 360 LEKQYDEITERIaeqEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHE----IKRY 433
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
193-512 |
1.43e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 193 LESLETKLNEYKKEVQH-QLQVEMCHKLKYFREAE------ITKVKMEERRKYEKELAEFQNEFERTCQAKNEALISQEK 265
Cdd:TIGR02168 188 LDRLEDILNELERQLKSlERQAEKAERYKELKAELrelelaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEE 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 266 NSLERIKKHREMESKEIYAQRQL--LLNDIALLRGREAELKERIETFELTQKLQEEKIKSEAEALERREQNLKNIEDtyd 343
Cdd:TIGR02168 268 KLEELRLEVSELEEEIEELQKELyaLANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE--- 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 344 qklKTELLKYQLELKDDYITRTNKLLEE-ERKNKEKTIHLQEELTVINSKKEELSKSVKHMKEVELELESVKAQFLAISK 422
Cdd:TIGR02168 345 ---KLEELKEELESLEAELEELEAELEElESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 423 QNHLLNEKVREM------SDYSQLKEEKVELQAQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQKELQKTEKAMELE 496
Cdd:TIGR02168 422 EIEELLKKLEEAelkelqAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
330
....*....|....*.
gi 28865720 497 HKDFETHRQALEKQLQ 512
Cdd:TIGR02168 502 EGFSEGVKALLKNQSG 517
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
192-520 |
5.62e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.27 E-value: 5.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 192 KLESLETKLNEyKKEVQHQLQVEMchklKYFREAEITKVKMEERRKYEKELAEFQNEFERTCQAKNEALISQEKNSLERI 271
Cdd:pfam02463 181 ETENLAELIID-LEELKLQELKLK----EQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIES 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 272 KKHREMESKEIYAQRQLLLNDIALLRGREAELKERIETFELTQKLQEEKIKSEAEALERREQNLKNIEDTYDQKL---KT 348
Cdd:pfam02463 256 SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELkkeKE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 349 ELLKYQLELKDDYITRTNKLLEEERKNKEKTIHLQEELTVINSKKEELSKSVKHMKEVELELESVKAQFLAISKQNHLLN 428
Cdd:pfam02463 336 EIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 429 EKvREMSDYSQLKEEKVELQAQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQKELQKTEKAMELEHKDFETHRQALE 508
Cdd:pfam02463 416 QL-EDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQK 494
|
330
....*....|..
gi 28865720 509 KQLQSEIENSAQ 520
Cdd:pfam02463 495 LEERSQKESKAR 506
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
172-548 |
5.74e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 5.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 172 LAEKFQLIDAQFADGFPHRSKLESLETKLNEYKKEVQH-QLQVEMCHKLKYFREAEitkvkmEERRKYEKELAEFQNEFE 250
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEElREELEKLEKLLQLLPLY------QELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 251 RtCQAKNEALISQEkNSLERIKKHREMESKEIYAQRQLLLNDIallRGREAELKERIETFELTQKLQEEKIKSEAEALER 330
Cdd:COG4717 150 E-LEERLEELRELE-EELEELEAELAELQEELEELLEQLSLAT---EEELQDLAEELEELQQRLAELEEELEEAQEELEE 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 331 REQNLKNIEDTY-----DQKLKTE------------LLKYQLELKDDYITRTNKLLEEERKNKEKTIHLQEELTVINSKK 393
Cdd:COG4717 225 LEEELEQLENELeaaalEERLKEArlllliaaallaLLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 394 EELSKSVKHMKEVELELESVKAQF-LAISKQNHLLNEKVREMSDYSQLKEEKVELQAQnkllkLQLEETRNENLRLLDRI 472
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALgLPPDLSPEELLELLDRIEELQELLREAEELEEE-----LQLEELEQEIAALLAEA 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 473 TQPPPE-----LVIFQKELQKTEKAMELEH---KDFETHRQALEKQLQSEIEN-SAQLRTQIAEYDASVKRLTVQVAELK 543
Cdd:COG4717 380 GVEDEEelraaLEQAEEYQELKEELEELEEqleELLGELEELLEALDEEELEEeLEELEEELEELEEELEELREELAELE 459
|
....*
gi 28865720 544 SQLKQ 548
Cdd:COG4717 460 AELEQ 464
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
233-556 |
5.95e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.98 E-value: 5.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 233 EERRKYEKELAEFQNEFERTCQAKNeaLISQEKNSLERIKKH-REMESKEIYAQRQL-----LLNDIALLRGREAELKER 306
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEE--LIKEKEKELEEVLREiNEISSELPELREELeklekEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 307 IETFELTQKLQEEKIKSEAEALERREQNLKNIEDTYDQ--KLKTELLKYQL--ELKDDYITRTNKLLEEERKNKEKTIHL 382
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKElkELKEKAEEYIKlsEFYEEYLDELREIEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 383 QEELTVINSKKEELSKSVKHMKEVELELESVKAQFLAISKQNHLLNEKVREMSDYSQLKEEKVElqAQNKLLKLQLEETR 462
Cdd:PRK03918 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLE--KELEELEKAKEEIE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 463 NENLRLLDRITQPPPELVIFQKELQKTEKA--------MELEhkdfETHRQALEKQLQSEIENSAqlrtqiaeydASVKR 534
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAIEELKKAkgkcpvcgRELT----EEHRKELLEEYTAELKRIE----------KELKE 470
|
330 340
....*....|....*....|..
gi 28865720 535 LTVQVAELKSQLKQTQIALENE 556
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKE 492
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
366-556 |
6.19e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 6.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 366 NKLLEEERKNKEKTIHLQEELTVINSKKEELSKSVKHMKEVELELESVKAQFLAISKQNHLLNEKVREMSDYSQLKE--- 442
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyq 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 443 EKVELQAQNKLLKLQLEETRNENLRLLDRITQpppeLVIFQKELQKTEKAMELEHKDFethRQALEKQLQSEIENSAQLR 522
Cdd:COG4717 133 ELEALEAELAELPERLEELEERLEELRELEEE----LEELEAELAELQEELEELLEQL---SLATEEELQDLAEELEELQ 205
|
170 180 190
....*....|....*....|....*....|....
gi 28865720 523 TQIAEYDASVKRLTVQVAELKSQLKQTQIALENE 556
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
318-555 |
6.58e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.94 E-value: 6.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 318 EEKIKSEAEALERREQNLKNIEDTYdqKLKTELLKYQLELKDDYITRTNKLLEEERKNKEKTIHLQEELTVINS------ 391
Cdd:TIGR04523 39 EKKLKTIKNELKNKEKELKNLDKNL--NKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSeikndk 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 392 -----KKEELSKSVKHMKEVELELESVKAQFLAISKQNHLLNEKvremsdYSQLKEEKVELQAQNKLLKLQLEETRNENL 466
Cdd:TIGR04523 117 eqknkLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNK------YNDLKKQKEELENELNLLEKEKLNIQKNID 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 467 RLLDRITQPPPELVIFQKELQKtEKAMELEHKDFETHRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQL 546
Cdd:TIGR04523 191 KIKNKLLKLELLLSNLKKKIQK-NKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL 269
|
....*....
gi 28865720 547 KQTQIALEN 555
Cdd:TIGR04523 270 SEKQKELEQ 278
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
295-472 |
7.11e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 46.69 E-value: 7.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 295 LLRGREAELKERIETFELTQKLQEEKIksEAEALeRREQNLKniedtydqkLKTELLKYQLELKDDYITRTNKLLEEERK 374
Cdd:PRK12704 23 FVRKKIAEAKIKEAEEEAKRILEEAKK--EAEAI-KKEALLE---------AKEEIHKLRNEFEKELRERRNELQKLEKR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 375 NKEKTIHLQEELTVINSKKEELSKSVKHMKEVELELESVKAqflaisKQNHLLNEKVREMSDYSQLKEEkvelQAQNKLL 454
Cdd:PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE------ELEELIEEQLQELERISGLTAE----EAKEILL 160
|
170
....*....|....*...
gi 28865720 455 KLQLEETRNENLRLLDRI 472
Cdd:PRK12704 161 EKVEEEARHEAAVLIKEI 178
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
199-455 |
7.78e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.55 E-value: 7.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 199 KLNE-YKKEVQHQLQVemchkLKYFREAEITKVKM------EERRKYEKELAEFQNEFErtcQAKNEAL-ISQEKNSL-E 269
Cdd:PHA02562 170 KLNKdKIRELNQQIQT-----LDMKIDHIQQQIKTynknieEQRKKNGENIARKQNKYD---ELVEEAKtIKAEIEELtD 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 270 RIKKH-REMESKEiyaqrqlllNDIALLRGREAELKERIETFELTQKLQEE---------KIKSEAEALERREQNLKNIE 339
Cdd:PHA02562 242 ELLNLvMDIEDPS---------AALNKLNTAAAKIKSKIEQFQKVIKMYEKggvcptctqQISEGPDRITKIKDKLKELQ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 340 DTYDqKLKTELLKYQlELKDDYITRTNKLLEEERKnkektihlqeeltvINSKKEELSKSVKHMKEVELELESVKAQFLA 419
Cdd:PHA02562 313 HSLE-KLDTAIDELE-EIMDEFNEQSKKLLELKNK--------------ISTNKQSLITLVDKAKKVKAAIEELQAEFVD 376
|
250 260 270
....*....|....*....|....*....|....*..
gi 28865720 420 ISKQNHLLNEKVREM-SDYSQLKEEKVELQAQNKLLK 455
Cdd:PHA02562 377 NAEELAKLQDELDKIvKTKSELVKEKYHRGIVTDLLK 413
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
235-378 |
9.04e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 46.24 E-value: 9.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 235 RRKYEKELAEFQNEFERTCQAKNEALISQEKNSLERIkkhREMESKEIYAQRQLLLNDIALLRGREAELKERIETFELtq 314
Cdd:PRK12705 28 RQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRE---RNQQRQEARREREELQREEERLVQKEEQLDARAEKLDN-- 102
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28865720 315 klQEEKIKSEAEALERREQNLKNIEDTYDQKL-----------KTELLK-YQLELKDDYITRTNKLLEEERKNKEK 378
Cdd:PRK12705 103 --LENQLEEREKALSARELELEELEKQLDNELyrvagltpeqaRKLLLKlLDAELEEEKAQRVKKIEEEADLEAER 176
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
317-561 |
1.25e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 317 QEEKIKSEAEALERREQNLKNIEDTYDQ-KLKTELLKYQLELKDDYITRTNKLLEEerknkektihLQEELTVINSKKEE 395
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAAlKKEEKALLKQLAALERRIAALARRIRA----------LEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 396 LSKSVKHMKEvelelesvkaqflAISKQNHLLNEKVREMSDYSQLKEEKVELQAQN-----KLLKLqLEETRNENLRLLD 470
Cdd:COG4942 88 LEKEIAELRA-------------ELEAQKEELAELLRALYRLGRQPPLALLLSPEDfldavRRLQY-LKYLAPARREQAE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 471 RITQPPPELVIFQKELQKTEKAMELEHKDFETHRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLKQTQ 550
Cdd:COG4942 154 ELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
250
....*....|.
gi 28865720 551 IALENEVYRNP 561
Cdd:COG4942 234 AEAAAAAERTP 244
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
206-537 |
1.29e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 1.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 206 EVQHQLQVEMCHKLKYFREAEITKVKMEERRKYEKELAEFQNEFER--TCQAKNEALISQEKNSLERIKKHREMESKEIY 283
Cdd:pfam17380 286 ERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRqaAIYAEQERMAMERERELERIRQEERKRELERI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 284 AQRQLLLndiallrgrEAELKERIETFELTQKLQEEKIKSEAEAlERREQNLKNIEDTYDQKLKTELLKYQLElKDDYIT 363
Cdd:pfam17380 366 RQEEIAM---------EISRMRELERLQMERQQKNERVRQELEA-ARKVKILEEERQRKIQQQKVEMEQIRAE-QEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 364 RTNKLLEEERKNKEKTIHLQEELTviNSKKEELSKSVKHMKEVELELESVKAQFLAISKQNHLLNEKVREMSDYSQLKEE 443
Cdd:pfam17380 435 REVRRLEEERAREMERVRLEEQER--QQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEE 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 444 KvelqaQNKLLKLQLEETRNENLRLLDRITqpppelvifQKELQKTEKAMELEHKDFETHRQALEKQLQSE-IENSAQLR 522
Cdd:pfam17380 513 R-----KRKLLEKEMEERQKAIYEEERRRE---------AEEERRKQQEMEERRRIQEQMRKATEERSRLEaMEREREMM 578
|
330
....*....|....*
gi 28865720 523 TQIAEYDASVKRLTV 537
Cdd:pfam17380 579 RQIVESEKARAEYEA 593
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
200-469 |
1.35e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.69 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 200 LNEYKKEVqhqlqVEMCHKLKYFreaEITKVKMEERRKYEKELAEFQNEFERtCQAKNEALISQEKNSLERIKKHREMES 279
Cdd:PRK05771 14 LKSYKDEV-----LEALHELGVV---HIEDLKEELSNERLRKLRSLLTKLSE-ALDKLRSYLPKLNPLREEKKKVSVKSL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 280 KEIYAQRQLLLNDIallrgrEAELKERIEtfELTQkLQEEK--IKSEAEALERreqnLKNIEdtydqklktelLKYQLEL 357
Cdd:PRK05771 85 EELIKDVEEELEKI------EKEIKELEE--EISE-LENEIkeLEQEIERLEP----WGNFD-----------LDLSLLL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 358 KDDYITRTNKLLEEERKNKEKTIHLQEELTVINSKKEE----LSKSVKHMKEVELELEsvKAQFLAISkqnhlLNEKVRE 433
Cdd:PRK05771 141 GFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYvyvvVVVLKELSDEVEEELK--KLGFERLE-----LEEEGTP 213
|
250 260 270
....*....|....*....|....*....|....*.
gi 28865720 434 MSDYSQLKEEKVELQAQNKLLKLQLEETRNENLRLL 469
Cdd:PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKYLEEL 249
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
275-548 |
1.40e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.78 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 275 REMESKEIYAQRQLLLNDIallRGREAELKerieTFELTQKLQEEKIKS---EAEALERREQNLKNIEDTYDQKLKT--- 348
Cdd:TIGR04523 31 QDTEEKQLEKKLKTIKNEL---KNKEKELK----NLDKNLNKDEEKINNsnnKIKILEQQIKDLNDKLKKNKDKINKlns 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 349 ELLKYQLELKDD------YITRTNKLLEEERKNKEKTIHLQEELTVINSKKEELSKSVKHMKEVELELESVKAQFLA--I 420
Cdd:TIGR04523 104 DLSKINSEIKNDkeqknkLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKekL 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 421 SKQNHLLNEKVREMSDYSQLKEEKVELQaQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQKELQKTEKAME-LEHKD 499
Cdd:TIGR04523 184 NIQKNIDKIKNKLLKLELLLSNLKKKIQ-KNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNqLKDEQ 262
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 28865720 500 FETHRQALEKQLQSEiensaQLRTQIAEYDASVKRLTVQVAELKSQLKQ 548
Cdd:TIGR04523 263 NKIKKQLSEKQKELE-----QNNKKIKELEKQLNQLKSEISDLNNQKEQ 306
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
239-535 |
2.16e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 45.23 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 239 EKELAEFQNEFERTCQAKNEALISQEKNSLERI---KKHREMeSKEIYAQRQLLLNDIALLRGREAELKERIETF-ELTQ 314
Cdd:pfam06160 92 EELLDDIEEDIKQILEELDELLESEEKNREEVEelkDKYREL-RKTLLANRFSYGPAIDELEKQLAEIEEEFSQFeELTE 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 315 -------KLQEEKIKSEAEALERR---------------EQNLKNIEDTYDQklkteLLKYQLELKDDYITRTNKLLEEE 372
Cdd:pfam06160 171 sgdyleaREVLEKLEEETDALEELmedipplyeelktelPDQLEELKEGYRE-----MEEEGYALEHLNVDKEIQQLEEQ 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 373 RKNKEKTIH------LQEELTVINSKKEEL----SKSVKHMKEVELELESVKAQFLAISKQNHLLNEKVREMSDYSQLKE 442
Cdd:pfam06160 246 LEENLALLEnleldeAEEALEEIEERIDQLydllEKEVDAKKYVEKNLPEIEDYLEHAEEQNKELKEELERVQQSYTLNE 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 443 EKVELQaqnKLLKLQLEETRNENLRLLDRI---TQPPPELVIFQKELQKTEKAMELEHKDFETHRQALEKQLQSEIENSA 519
Cdd:pfam06160 326 NELERV---RGLEKQLEELEKRYDEIVERLeekEVAYSELQEELEEILEQLEEIEEEQEEFKESLQSLRKDELEAREKLD 402
|
330
....*....|....*.
gi 28865720 520 QLRTQIAEydasVKRL 535
Cdd:pfam06160 403 EFKLELRE----IKRL 414
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
232-554 |
2.26e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.21 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 232 MEERRKYEKELAEFQNEFERTCQAKNEALISQEKNSLERIKKHREMESKEIYAQRQLLLNDialLRGREAELKERIETFE 311
Cdd:pfam12128 356 LENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDD---LQALESELREQLEAGK 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 312 LTQKLQEEKIKSEAEALERReqnlkniedtYDQKLKTELLKYQLELKDDYITRTNKLLEEERKNKEKtihLQEELTVINS 391
Cdd:pfam12128 433 LEFNEEEYRLKSRLGELKLR----------LNQATATPELLLQLENFDERIERAREEQEAANAEVER---LQSELRQARK 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 392 KKEELSKSVK----HMKEVELELESVKAQflaISKQNHLLNEKVR-EMSDYSQ---------------LKEEKVELQAQN 451
Cdd:pfam12128 500 RRDQASEALRqasrRLEERQSALDELELQ---LFPQAGTLLHFLRkEAPDWEQsigkvispellhrtdLDPEVWDGSVGG 576
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 452 KL----LKLQLEETR-------NENLRL------------LDRITQPPPELVIFQKELQKTEKAMELEHKDFETHRQALe 508
Cdd:pfam12128 577 ELnlygVKLDLKRIDvpewaasEEELRErldkaeealqsaREKQAAAEEQLVQANGELEKASREETFARTALKNARLDL- 655
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 28865720 509 KQLQSEIENSA-QLRTQIAEYDASV-KRLTVQVAELKSQLKQTQIALE 554
Cdd:pfam12128 656 RRLFDEKQSEKdKKNKALAERKDSAnERLNSLEAQLKQLDKKHQAWLE 703
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
233-494 |
4.69e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 44.28 E-value: 4.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 233 EERRKYEKELAEFQNEFERTCQ-AKNEALISQEKNSLERIKKHREMESKEIYAQRQLLLNDIALLRGREAELKERIETFE 311
Cdd:PRK03918 473 EKERKLRKELRELEKVLKKESElIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 312 LTQKlQEEKIKSEAEALERREQNLKNIEDTYDQKLKTELLKYQLELKDDYitrtNKLLEEERKNKEktihLQEELTVINS 391
Cdd:PRK03918 553 ELKK-KLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFY----NEYLELKDAEKE----LEREEKELKK 623
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 392 KKEELSKSVKHMKEVELELESVKAQflaiskqnhlLNEKVREMSD--YSQLKEEKVELQAQNKLLKLQLEE---TRNENL 466
Cdd:PRK03918 624 LEEELDKAFEELAETEKRLEELRKE----------LEELEKKYSEeeYEELREEYLELSRELAGLRAELEElekRREEIK 693
|
250 260
....*....|....*....|....*...
gi 28865720 467 RLLDRITQPPPELVIFQKELQKTEKAME 494
Cdd:PRK03918 694 KTLEKLKEELEEREKAKKELEKLEKALE 721
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
304-554 |
4.83e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 4.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 304 KERIETFELTQKLQEEKIKSEAEALERREQNLKNIEDTYDQKLKTELLKYQLELKDDYITRTNKLLEEERKNKEKTIHLQ 383
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 384 EELTVINSKKEELSKSVKHMKEVELELESVKAQFLAISKQNHLLNEKVREmsdysQLKEEKVELQAQNKLLKLQLEETRN 463
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKK-----LQEEELKLLAKEEEELKSELLKLER 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 464 ENLRLLDRITQPPPELVIFQKELQKTEKAMELEHKDFETHRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELK 543
Cdd:pfam02463 308 RKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLS 387
|
250
....*....|.
gi 28865720 544 SQLKQTQIALE 554
Cdd:pfam02463 388 SAAKLKEEELE 398
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
191-463 |
5.43e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 5.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 191 SKLESLETKLNEYKKEVQH-QLQVEMCHKLKYFREAEITKVKME-----------ERRKYEKELAEFQNEFERTCQAKN- 257
Cdd:TIGR04523 391 SQINDLESKIQNQEKLNQQkDEQIKKLQQEKELLEKEIERLKETiiknnseikdlTNQDSVKELIIKNLDNTRESLETQl 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 258 ---EALISQEKNSLERIKKH---REMESKEIYAQRQLLLNDIALLRGREAELKERIETFELTQKLQEEKIKSEAEALERR 331
Cdd:TIGR04523 471 kvlSRSINKIKQNLEQKQKElksKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKD 550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 332 EQNLKNiedtydQKLKTELLKYQLELKDdyITRTNKLLeeERKNKEKTIHLQEELTVINSKKEELSKSVKHMKEVELELE 411
Cdd:TIGR04523 551 DFELKK------ENLEKEIDEKNKEIEE--LKQTQKSL--KKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELE 620
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 28865720 412 SVKAQflaiskqnhllNEKVREMSDYSQLKEEKVELQAqnKLLKLQLEETRN 463
Cdd:TIGR04523 621 KAKKE-----------NEKLSSIIKNIKSKKNKLKQEV--KQIKETIKEIRN 659
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
405-551 |
6.86e-04 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 43.11 E-value: 6.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 405 EVELELESVKAQFLAISKQNHLLNEKVREMSDYSQLKEEKVELQAQNKLLKLQLEetRNENLRLLDRITQpppelvifqk 484
Cdd:COG1566 80 DLQAALAQAEAQLAAAEAQLARLEAELGAEAEIAAAEAQLAAAQAQLDLAQRELE--RYQALYKKGAVSQ---------- 147
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 28865720 485 elQKTEKAmELEHKDFETHRQALEKQLQsEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLKQTQI 551
Cdd:COG1566 148 --QELDEA-RAALDAAQAQLEAAQAQLA-QAQAGLREEEELAAAQAQVAQAEAALAQAELNLARTTI 210
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
250-541 |
9.01e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 9.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 250 ERTCQAKN--EALISQEKNSLERIKKH-REMESKEIYAQrqllLNDialLRGREAELKERIETFElTQKLQEEKIKSEAE 326
Cdd:PRK02224 169 ERASDARLgvERVLSDQRGSLDQLKAQiEEKEEKDLHER----LNG---LESELAELDEEIERYE-EQREQARETRDEAD 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 327 A-LERREQNLKNIEDtydqkLKTELLKYQLELKDDYITRTNkLLEEERKNKEKTIHLQEELT--------------VINS 391
Cdd:PRK02224 241 EvLEEHEERREELET-----LEAEIEDLRETIAETEREREE-LAEEVRDLRERLEELEEERDdllaeaglddadaeAVEA 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 392 KKEELSKsvkhmKEVELElESVKAQFLAISKQNhllNEKVREMSDYSQLKEEKVELQAQNKLLKLQLEETRNEnlrlldr 471
Cdd:PRK02224 315 RREELED-----RDEELR-DRLEECRVAAQAHN---EEAESLREDADDLEERAEELREEAAELESELEEAREA------- 378
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 472 ITQPPPELVIFQKELQKTEKAMElehkDFETHRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAE 541
Cdd:PRK02224 379 VEDRREEIEELEEEIEELRERFG----DAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEE 444
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
413-554 |
9.66e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 42.65 E-value: 9.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 413 VKAQFL---AISKQNHLLNEKVREMSDYSQLkeekvelqaqnkllkLQLEETRNENLRllDRITQPPPELVIFQKE---L 486
Cdd:PRK09039 38 VVAQFFlsrEISGKDSALDRLNSQIAELADL---------------LSLERQGNQDLQ--DSVANLRASLSAAEAErsrL 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28865720 487 QKTEKAMELEHKDFETHRQALEKQLQSEIENSAQLRTQIAeydasvkRLTVQVAELKSQLKQTQIALE 554
Cdd:PRK09039 101 QALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE-------LLNQQIAALRRQLAALEAALD 161
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
170-450 |
1.11e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 42.31 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 170 VSLAEKFQLIDAQFADGFP----HRSKLESLETKLNEYKKEVQHQLQVEMCHklkyFREAEITKVKMEERRKYEKELAEF 245
Cdd:smart00787 10 ISLQDFLNMTGIRFMELLTtkrrHTPAPAISLNRISEEDCSLDQYVVAGYCT----VPLLELYQFSCKELKKYISEGRDL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 246 QNEFERTCQAKNEALISQE-----------KNSLERIKKHREMESKEI-YAQRQLLLNDI--------ALLRGREAELKE 305
Cdd:smart00787 86 FKEIEEETLINNPPLFKEYfsaspdvkllmDKQFQLVKTFARLEAKKMwYEWRMKLLEGLkegldenlEGLKEDYKLLMK 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 306 RIETF-ELTQKLQEEKikseaEALERREQNLKNIEDTYDQKLKTELLKYQLELKDDyitrtnkLLEEERKNKEKTIhLQE 384
Cdd:smart00787 166 ELELLnSIKPKLRDRK-----DALEEELRQLKQLEDELEDCDPTELDRAKEKLKKL-------LQEIMIKVKKLEE-LEE 232
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 28865720 385 ELtviNSKKEELSKSVKHMKEVELELESVKAQFLAIskqnhllneKVREMSDYSQLKEEKVELQAQ 450
Cdd:smart00787 233 EL---QELESKIEDLTNKKSELNTEIAEAEKKLEQC---------RGFTFKEIEKLKEQLKLLQSL 286
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
224-509 |
1.20e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 42.21 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 224 EAEITKVKmEERRKYEKELAEFQNEFeRTCQAKNEALISQEKNSLERIKKHREmeskeiyaQRQLLLNDIALLRGREAEL 303
Cdd:COG1340 14 EEKIEELR-EEIEELKEKRDELNEEL-KELAEKRDELNAQVKELREEAQELRE--------KRDELNEKVKELKEERDEL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 304 KERIEtfELTQKLqeEKIKSEAEALERREQNLKNIEDTYDQ---KLKTELLKYQLELK-DDYITRTNKLLEEERKNKEKT 379
Cdd:COG1340 84 NEKLN--ELREEL--DELRKELAELNKAGGSIDKLRKEIERlewRQQTEVLSPEEEKElVEKIKELEKELEKAKKALEKN 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 380 IHLQEELTVINSKKEELSKSVKHMKEVELELESVKAQFLAISKQNHLLNEKVREmsdysqLKEEKVELQAQNKLLKLQLE 459
Cdd:COG1340 160 EKLKELRAELKELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADE------LHKEIVEAQEKADELHEEII 233
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 28865720 460 ETRNENLRLLDRITqpppELVIFQKELQKTEKAMELEHKdfetHRQALEK 509
Cdd:COG1340 234 ELQKELRELRKELK----KLRKKQRALKREKEKEELEEK----AEEIFEK 275
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
365-548 |
1.32e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 365 TNKLLEEERKNKEKTIHLQEELTVINSKKEELSKSVKHMKEVELELESVKAQFLAISKQNHLLNEKVRemsdysQLKEEK 444
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA------QLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 445 VELQAQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQKELQKTEKAMELEHKDFETHRQ-----------------AL 507
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEeaanlrerleslerriaAT 836
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 28865720 508 EKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLKQ 548
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEA 877
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
231-491 |
1.87e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 231 KMEERRKYEKELAEFQNEFERTCQA----------KNEALISQEKNSLERIKKHREMESKEIYAQRQLLLndiALLRGRE 300
Cdd:COG5022 808 SRKEYRSYLACIIKLQKTIKREKKLreteevefslKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRV---ELAERQL 884
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 301 AELKERIETF---------------ELTQKLQE---EKIKSEAEALERREQNLKNIE----DTYDQKLKTELLKYQ---- 354
Cdd:COG5022 885 QELKIDVKSIsslklvnleleseiiELKKSLSSdliENLEFKTELIARLKKLLNNIDleegPSIEYVKLPELNKLHeves 964
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 355 -----LELKDDYITRTNKLLEEERKNKEKTIHLQEELTVINSKKEELSKSVKHMKEVELELESVKAQFLAISKQNHLLNE 429
Cdd:COG5022 965 klketSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSI 1044
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28865720 430 KVREMSDYSQLKEEKVELQAQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQKELQKTEK 491
Cdd:COG5022 1045 LKPLQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNR 1106
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
351-558 |
2.11e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 351 LKYQLELKDDYITRTNKLLEEER-----------------KNKEKTIHLQEELTVINSKKEELSKSVKhmkEVELELESV 413
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLpelrkeleeaeaaleefRQKNGLVDLSEEAKLLLQQLSELESQLA---EARAELAEA 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 414 KAQFLAISKQNHLLNEKVREMSD---YSQLKEEKVELQAQnkLLKLQLEETRNEnlrlldritqppPELVIFQKELQKTE 490
Cdd:COG3206 239 EARLAALRAQLGSGPDALPELLQspvIQQLRAQLAELEAE--LAELSARYTPNH------------PDVIALRAQIAALR 304
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 28865720 491 KAMELEHKDFethRQALEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELkSQLKQtQIALENEVY 558
Cdd:COG3206 305 AQLQQEAQRI---LASLEAELEALQAREASLQAQLAQLEARLAELPELEAEL-RRLER-EVEVARELY 367
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
171-453 |
2.20e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 2.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 171 SLAEKFQLIDAQFADgfpHRSKLESLETKLNEYKKEVQhqLQVEMCHKLKyfREAEITKVKMEERRKYEKELAEFQNEFE 250
Cdd:TIGR02168 257 ELTAELQELEEKLEE---LRLEVSELEEEIEELQKELY--ALANEISRLE--QQKQILRERLANLERQLEELEAQLEELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 251 RTCQAKNEALISQEKNsLERIKKHREMESKEIYAQRQLLLN----------DIALLRGREAELKERIETFELTQKLQEEK 320
Cdd:TIGR02168 330 SKLDELAEELAELEEK-LEELKEELESLEAELEELEAELEElesrleeleeQLETLRSKVAQLELQIASLNNEIERLEAR 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 321 IKSEAEALERREQNLkniedtydQKLKTELLKYQLELKDDYITRTNKLLEEerknkektihLQEELTVINSKKEELSKSV 400
Cdd:TIGR02168 409 LERLEDRRERLQQEI--------EELLKKLEEAELKELQAELEELEEELEE----------LQEELERLEEALEELREEL 470
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 28865720 401 khmKEVELELESVKAQFLAISKQNHLLNEKVREMSDYSQlkEEKVELQAQNKL 453
Cdd:TIGR02168 471 ---EEAEQALDAAERELAQLQARLDSLERLQENLEGFSE--GVKALLKNQSGL 518
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
319-522 |
2.27e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 319 EKIKSEAEALERREQNLKNIedtydQKLKTELlKYQLELKDDYITRTNKLLEEERKNKEKTIHLQEELTVINSKKEELSK 398
Cdd:PRK03918 148 EKVVRQILGLDDYENAYKNL-----GEVIKEI-KRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELRE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 399 SVKHMKEVELELESVKAQFLAISKQNHLLNEKVREmsdysqLKEEKVELQAQNKLLKLQLEETRnENLRLLDRITQPPPE 478
Cdd:PRK03918 222 ELEKLEKEVKELEELKEEIEELEKELESLEGSKRK------LEEKIRELEERIEELKKEIEELE-EKVKELKELKEKAEE 294
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 28865720 479 LVIFQKELQKTEKA---MELEHKDFETHRQALEKQLQSEIENSAQLR 522
Cdd:PRK03918 295 YIKLSEFYEEYLDElreIEKRLSRLEEEINGIEERIKELEEKEERLE 341
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
284-513 |
3.56e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 284 AQRQLLLNDIALLRGREAELKERIETFELTQKLQEEKIKSEAEALERREQNLKNIEDTYD--QKLKTELLKYQLELKDDY 361
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAelEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 362 ITRTNKLLEEERKNKEKTIHLQEELtvinskkEELSKSVKHMKEVeleLESVKAQFLAISKQNHLLNEKVREMSdysQLK 441
Cdd:COG4942 107 AELLRALYRLGRQPPLALLLSPEDF-------LDAVRRLQYLKYL---APARREQAEELRADLAELAALRAELE---AER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28865720 442 EEKVELQAQNKLLKLQLEETRNENLRLLDRITQPPPELVIFQKELQKTEKAMELEHKDFETHRQALEKQLQS 513
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
191-399 |
5.36e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.73 E-value: 5.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 191 SKLESLETKLNEYKKEVQH---QLQVEMCHKLKYFREAEITKVKMEERRKYEKELAEFQNEFERT---CQAKNEALISQE 264
Cdd:pfam02463 293 KEEEELKSELLKLERRKVDdeeKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEeeeLEKLQEKLEQLE 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 265 KNSLERIKKHREMES-----KEIYAQRQLLLNDIALLRGREAELKERIETFELTQKL-QEEKIKSEAEALERREQNLKNI 338
Cdd:pfam02463 373 EELLAKKKLESERLSsaaklKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELeILEEEEESIELKQGKLTEEKEE 452
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 28865720 339 EDtyDQKLKTELLKYQLELKDDYITRTNKLLEEERKNKEKTIHLQEELTVINSKKEELSKS 399
Cdd:pfam02463 453 LE--KQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKV 511
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
182-535 |
5.38e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 5.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 182 QFADGFPHRSKLESLETKLNEYKKEVQHQLQvemchKLKYFREAEitkvkmEERRKYEKELAEFQNEFERTCQAKNEALI 261
Cdd:COG4717 123 KLLQLLPLYQELEALEAELAELPERLEELEE-----RLEELRELE------EELEELEAELAELQEELEELLEQLSLATE 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 262 SQEKNSLERIKKHREmESKEIYAQRQLLLNDIALLRGREAELKERIETFELTQKLQEEKIKSEAEA-----------LER 330
Cdd:COG4717 192 EELQDLAEELEELQQ-RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAallallglggsLLS 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 331 REQNLKNI----------EDTYDQKLKTELLKYQLELkdDYITRTNKLLEEERKNKEKTIHLQEELTVinSKKEELSKSV 400
Cdd:COG4717 271 LILTIAGVlflvlgllalLFLLLAREKASLGKEAEEL--QALPALEELEEEELEELLAALGLPPDLSP--EELLELLDRI 346
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 401 KHMKEVELELESVKAQF----LAISKQNHLLNEKVREMSDYSQL---KEEKVELQAQNKLLKLQLEETRNENLRLLDRIT 473
Cdd:COG4717 347 EELQELLREAEELEEELqleeLEQEIAALLAEAGVEDEEELRAAleqAEEYQELKEELEELEEQLEELLGELEELLEALD 426
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 28865720 474 qpppelvifqkelqktEKAMELEHKDFETHRQALEKQLQseiensaQLRTQIAEYDASVKRL 535
Cdd:COG4717 427 ----------------EEELEEELEELEEELEELEEELE-------ELREELAELEAELEQL 465
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
300-575 |
6.60e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.67 E-value: 6.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 300 EAELKERIETFElTQKLQEEKIKSEAEALERREQNLKNIEDtydQKLKTELLKYQLE---------------LKD----- 359
Cdd:PRK11281 38 EADVQAQLDALN-KQKLLEAEDKLVQQDLEQTLALLDKIDR---QKEETEQLKQQLAqapaklrqaqaeleaLKDdndee 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 360 ---DYITRTNKLLE---EERKNKEKTihLQEELTVINSK-----------KEELSKSVKHMKEVELELESVKA--QFLAI 420
Cdd:PRK11281 114 treTLSTLSLRQLEsrlAQTLDQLQN--AQNDLAEYNSQlvslqtqperaQAALYANSQRLQQIRNLLKGGKVggKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 421 SKQNHLLNEKVreMSDySQLKEEKVELQAQNKL---LKLQLEETrNENLRLLDRITQPPPElVIFQKELQKTEK-AMELE 496
Cdd:PRK11281 192 SQRVLLQAEQA--LLN-AQNDLQRKSLEGNTQLqdlLQKQRDYL-TARIQRLEHQLQLLQE-AINSKRLTLSEKtVQEAQ 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 497 HKDFETHRQAlEKQLQSEIENSAQLRTQIAEYDASVKRLTVQVAELKSQLK---QTQIALENEvyrnpkhslIHSLSG-L 572
Cdd:PRK11281 267 SQDEAARIQA-NPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLDrltQSERNIKEQ---------ISVLKGsL 336
|
...
gi 28865720 573 LLS 575
Cdd:PRK11281 337 LLS 339
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
254-356 |
6.93e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.15 E-value: 6.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 28865720 254 QAKNEA--LISQEKNSLERIKKHREMESK-EIYAQRQLLLNDIALLRGREAELKERIETFELTQKLQEEKIKSEAEALER 330
Cdd:PRK12704 35 EAEEEAkrILEEAKKEAEAIKKEALLEAKeEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEK 114
|
90 100
....*....|....*....|....*...
gi 28865720 331 REQNLKNIEDTYDQKLKT--ELLKYQLE 356
Cdd:PRK12704 115 KEKELEQKQQELEKKEEEleELIEEQLQ 142
|
|
| |
