NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|9755652|emb|CAC01805|]
View 

hypothetical protein [Arabidopsis thaliana]

Protein Classification

COX assembly mitochondrial protein( domain architecture ID 10554202)

COX assembly mitochondrial protein is required for mitochondrial cytochrome c oxidase (COX) assembly and respiration

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Cmc1 pfam08583
Cytochrome c oxidase biogenesis protein Cmc1 like; Cmc1 is a metallo-chaperone like protein ...
 21-86 3.13e-11

Cytochrome c oxidase biogenesis protein Cmc1 like; Cmc1 is a metallo-chaperone like protein which is known to localize to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.


:

Pssm-ID: 400756  Cd Length: 70  Bit Score: 53.88  E-value: 3.13e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 9755652    21 LRSKMKAKALMECDQYVSKYAQCATG-RTFSVVWTCRKQARELNTCLHQFTNDNVLEEMKRAYMVQE 86
Cdd:pfam08583  1 MHPQLRKKAFKKCAELIKALAECHKGgRTLKAFGKCNKEKRAMNKCLREYRTDEALRDRERDREIKE 67
 
Name Accession Description Interval E-value
Cmc1 pfam08583
Cytochrome c oxidase biogenesis protein Cmc1 like; Cmc1 is a metallo-chaperone like protein ...
 21-86 3.13e-11

Cytochrome c oxidase biogenesis protein Cmc1 like; Cmc1 is a metallo-chaperone like protein which is known to localize to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.


Pssm-ID: 400756  Cd Length: 70  Bit Score: 53.88  E-value: 3.13e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 9755652    21 LRSKMKAKALMECDQYVSKYAQCATG-RTFSVVWTCRKQARELNTCLHQFTNDNVLEEMKRAYMVQE 86
Cdd:pfam08583  1 MHPQLRKKAFKKCAELIKALAECHKGgRTLKAFGKCNKEKRAMNKCLREYRTDEALRDRERDREIKE 67
 
Name Accession Description Interval E-value
Cmc1 pfam08583
Cytochrome c oxidase biogenesis protein Cmc1 like; Cmc1 is a metallo-chaperone like protein ...
 21-86 3.13e-11

Cytochrome c oxidase biogenesis protein Cmc1 like; Cmc1 is a metallo-chaperone like protein which is known to localize to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.


Pssm-ID: 400756  Cd Length: 70  Bit Score: 53.88  E-value: 3.13e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 9755652    21 LRSKMKAKALMECDQYVSKYAQCATG-RTFSVVWTCRKQARELNTCLHQFTNDNVLEEMKRAYMVQE 86
Cdd:pfam08583  1 MHPQLRKKAFKKCAELIKALAECHKGgRTLKAFGKCNKEKRAMNKCLREYRTDEALRDRERDREIKE 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH