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Conserved domains on  [gi|7619739|emb|CAB88203|]
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putative cuticular collagen [Globodera pallida]

Protein Classification

cuticular collagen family protein( domain architecture ID 10478613)

cuticular collagen family protein is a structural macromolecule of the extracellular matrix containing triple helix domains that form tight interactions and stabilize supramolecular aggregates

Gene Ontology:  GO:0042302|GO:0005581

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Col_cuticle_N pfam01484
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
 10-58 1.65e-11

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens, see pfam01391. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


:

Pssm-ID: 460226  Cd Length: 50  Bit Score: 58.24  E-value: 1.65e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 7619739     10 IASVCSLMAIIATVVTLPSLYSEMTELNTKVRDGVEAFRVNTDSAWTDL 58
Cdd:pfam01484   2 VAVAFSTVAILSSLITLPSIYNDIQELQSEVLDEMDEFKARSDDAWNEM 50
 
Name Accession Description Interval E-value
Col_cuticle_N pfam01484
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
 10-58 1.65e-11

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens, see pfam01391. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


Pssm-ID: 460226  Cd Length: 50  Bit Score: 58.24  E-value: 1.65e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 7619739     10 IASVCSLMAIIATVVTLPSLYSEMTELNTKVRDGVEAFRVNTDSAWTDL 58
Cdd:pfam01484   2 VAVAFSTVAILSSLITLPSIYNDIQELQSEVLDEMDEFKARSDDAWNEM 50
Col_cuticle_N smart01088
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
 6-58 7.01e-11

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


Pssm-ID: 198156  Cd Length: 53  Bit Score: 56.71  E-value: 7.01e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 7619739       6 IVLGIASVCSLMAIIATVVTLPSLYSEMTELNTKVRDGVEAFRVNTDSAWTDL 58
Cdd:smart01088   1 LVAYVAVAVSTVAVLSALVTLPSIYNDIQSFQSELLDEMDEFKARADDAWNEM 53
 
Name Accession Description Interval E-value
Col_cuticle_N pfam01484
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
 10-58 1.65e-11

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens, see pfam01391. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


Pssm-ID: 460226  Cd Length: 50  Bit Score: 58.24  E-value: 1.65e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 7619739     10 IASVCSLMAIIATVVTLPSLYSEMTELNTKVRDGVEAFRVNTDSAWTDL 58
Cdd:pfam01484   2 VAVAFSTVAILSSLITLPSIYNDIQELQSEVLDEMDEFKARSDDAWNEM 50
Col_cuticle_N smart01088
Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is ...
 6-58 7.01e-11

Nematode cuticle collagen N-terminal domain; The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens. Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins.


Pssm-ID: 198156  Cd Length: 53  Bit Score: 56.71  E-value: 7.01e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 7619739       6 IVLGIASVCSLMAIIATVVTLPSLYSEMTELNTKVRDGVEAFRVNTDSAWTDL 58
Cdd:smart01088   1 LVAYVAVAVSTVAVLSALVTLPSIYNDIQSFQSELLDEMDEFKARADDAWNEM 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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