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Conserved domains on  [gi|7269024|emb|CAB80757|]
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putative protein [Arabidopsis thaliana]

Protein Classification

bZIP_plant_GBF1 and bZIP_C domain-containing protein( domain architecture ID 11265199)

bZIP_plant_GBF1 and bZIP_C domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
bZIP_C super family cl13879
Basic leucine-zipper C terminal; This family of proteins is found in eukaryotes. Proteins in ...
 284-385 1.74e-11

Basic leucine-zipper C terminal; This family of proteins is found in eukaryotes. Proteins in this family are typically between 174 and 411 amino acids in length. The family is found in association with pfam00170. There is a conserved KVK sequence motif. There is a single completely conserved residue K that may be functionally important. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin.


The actual alignment was detected with superfamily member pfam12498:

Pssm-ID: 403631  Cd Length: 122  Bit Score: 60.97  E-value: 1.74e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7269024    284 TLRAKVKMAEETVKRVTGMNPMLLGRSSghNNNNRMPITGNNRMDSSSIIPAYQPHSN-------LNHMSNQNIGIPTIL 356
Cdd:pfam12498   1 TLRAKVKMAEESVKRVTGLNPLFQAISD--MSSLSMPFSGSPSDASSDAAVPIQDDPNhyfatstADDAQRSNNGMPDIA 78

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 7269024    357 PPRL--GNNFAAPPSQTS-----SPLQRIRNGQNHH 385
Cdd:pfam12498  79 PAQLqeDLDIANGTVAAGkmgrtASLQRVASLEHLQ 114
BRLZ smart00338
basic region leucin zipper;
214-276 9.16e-04

basic region leucin zipper;


:

Pssm-ID: 197664 [Multi-domain]  Cd Length: 65  Bit Score: 37.54  E-value: 9.16e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7269024     214 EDVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYDEAAVGNR 276
Cdd:smart00338   2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64
 
Name Accession Description Interval E-value
bZIP_C pfam12498
Basic leucine-zipper C terminal; This family of proteins is found in eukaryotes. Proteins in ...
 284-385 1.74e-11

Basic leucine-zipper C terminal; This family of proteins is found in eukaryotes. Proteins in this family are typically between 174 and 411 amino acids in length. The family is found in association with pfam00170. There is a conserved KVK sequence motif. There is a single completely conserved residue K that may be functionally important. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin.


Pssm-ID: 403631  Cd Length: 122  Bit Score: 60.97  E-value: 1.74e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7269024    284 TLRAKVKMAEETVKRVTGMNPMLLGRSSghNNNNRMPITGNNRMDSSSIIPAYQPHSN-------LNHMSNQNIGIPTIL 356
Cdd:pfam12498   1 TLRAKVKMAEESVKRVTGLNPLFQAISD--MSSLSMPFSGSPSDASSDAAVPIQDDPNhyfatstADDAQRSNNGMPDIA 78

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 7269024    357 PPRL--GNNFAAPPSQTS-----SPLQRIRNGQNHH 385
Cdd:pfam12498  79 PAQLqeDLDIANGTVAAGkmgrtASLQRVASLEHLQ 114
BRLZ smart00338
basic region leucin zipper;
214-276 9.16e-04

basic region leucin zipper;


Pssm-ID: 197664 [Multi-domain]  Cd Length: 65  Bit Score: 37.54  E-value: 9.16e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7269024     214 EDVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYDEAAVGNR 276
Cdd:smart00338   2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64
ATG16 pfam08614
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ...
 236-309 5.01e-03

Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.


Pssm-ID: 462536 [Multi-domain]  Cd Length: 176  Bit Score: 37.60  E-value: 5.01e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7269024    236 KQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYDEAAVGNRILKADIETLRAKVKMAEETVKRVTGMNPMLLGR 309
Cdd:pfam08614  90 LEKKLREDERRLAALEAERAQLEEKLKDREEELREKRKLNQDLQDELVALQLQLNMAEEKLRKLEKENRELVER 163
 
Name Accession Description Interval E-value
bZIP_C pfam12498
Basic leucine-zipper C terminal; This family of proteins is found in eukaryotes. Proteins in ...
 284-385 1.74e-11

Basic leucine-zipper C terminal; This family of proteins is found in eukaryotes. Proteins in this family are typically between 174 and 411 amino acids in length. The family is found in association with pfam00170. There is a conserved KVK sequence motif. There is a single completely conserved residue K that may be functionally important. Various bZIP proteins have been found and shown to play a role in seed-specific gene expression. bZIP binds to the alpha-globulin gene promoter, but not to promoters of other major storage genes such as glutelin, prolamin and albumin.


Pssm-ID: 403631  Cd Length: 122  Bit Score: 60.97  E-value: 1.74e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7269024    284 TLRAKVKMAEETVKRVTGMNPMLLGRSSghNNNNRMPITGNNRMDSSSIIPAYQPHSN-------LNHMSNQNIGIPTIL 356
Cdd:pfam12498   1 TLRAKVKMAEESVKRVTGLNPLFQAISD--MSSLSMPFSGSPSDASSDAAVPIQDDPNhyfatstADDAQRSNNGMPDIA 78

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 7269024    357 PPRL--GNNFAAPPSQTS-----SPLQRIRNGQNHH 385
Cdd:pfam12498  79 PAQLqeDLDIANGTVAAGkmgrtASLQRVASLEHLQ 114
BRLZ smart00338
basic region leucin zipper;
214-276 9.16e-04

basic region leucin zipper;


Pssm-ID: 197664 [Multi-domain]  Cd Length: 65  Bit Score: 37.54  E-value: 9.16e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7269024     214 EDVKKSRRMLSNRESARRSRRRKQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYDEAAVGNR 276
Cdd:smart00338   2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64
ATG16 pfam08614
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ...
 236-309 5.01e-03

Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.


Pssm-ID: 462536 [Multi-domain]  Cd Length: 176  Bit Score: 37.60  E-value: 5.01e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7269024    236 KQEQTSDLETQVNDLKGEHSSLLKQLSNMNHKYDEAAVGNRILKADIETLRAKVKMAEETVKRVTGMNPMLLGR 309
Cdd:pfam08614  90 LEKKLREDERRLAALEAERAQLEEKLKDREEELREKRKLNQDLQDELVALQLQLNMAEEKLRKLEKENRELVER 163
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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