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Conserved domains on  [gi|7269111|emb|CAB79220|]
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putative protein [Arabidopsis thaliana]

Protein Classification

AAI_LTSS domain-containing protein( domain architecture ID 10627303)

AAI_LTSS domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LTP_2 pfam14368
Probable lipid transfer; The members of this family are probably involved in lipid transfer. ...
 13-113 7.69e-16

Probable lipid transfer; The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways.


:

Pssm-ID: 433909  Cd Length: 100  Bit Score: 68.66  E-value: 7.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7269111     13 VVIAPQWTETKKPPRPSDTSdtsgtsgrdrrtmCPLSIPGIVQNCYATLNA-----FPSKECCKDLKTASKREVTCLCNN 87
Cdd:pfam14368   1 LALALAAQAPAPPPAPAAAS-------------CTLSMLSGLSPCLPYLTGtpaatAPSPACCGALKSAVSTDVTCLCAL 67

                          90       100       110
                  ....*....|....*....|....*....|
gi 7269111     88 VIA-HPDPLYTNTNQ---VNKACGVLDKYA 113
Cdd:pfam14368  68 VTApLPIGFPINVTRalaLPRACGVKTPPS 97
 
Name Accession Description Interval E-value
LTP_2 pfam14368
Probable lipid transfer; The members of this family are probably involved in lipid transfer. ...
 13-113 7.69e-16

Probable lipid transfer; The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways.


Pssm-ID: 433909  Cd Length: 100  Bit Score: 68.66  E-value: 7.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7269111     13 VVIAPQWTETKKPPRPSDTSdtsgtsgrdrrtmCPLSIPGIVQNCYATLNA-----FPSKECCKDLKTASKREVTCLCNN 87
Cdd:pfam14368   1 LALALAAQAPAPPPAPAAAS-------------CTLSMLSGLSPCLPYLTGtpaatAPSPACCGALKSAVSTDVTCLCAL 67

                          90       100       110
                  ....*....|....*....|....*....|
gi 7269111     88 VIA-HPDPLYTNTNQ---VNKACGVLDKYA 113
Cdd:pfam14368  68 VTApLPIGFPINVTRalaLPRACGVKTPPS 97
AAI_LTSS cd00010
AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein ...
 65-108 8.66e-03

AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.


Pssm-ID: 237980  Cd Length: 63  Bit Score: 33.17  E-value: 8.66e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 7269111   65 PSKECCKDLKTASKREVTCLCnNVIAHPDPLYTNTNQVNKA------CGV 108
Cdd:cd00010  15 PPSDCCSGLKSVVKSDPKCLC-AALNGPGASLLGLKNATRAlalpaaCGL 63
 
Name Accession Description Interval E-value
LTP_2 pfam14368
Probable lipid transfer; The members of this family are probably involved in lipid transfer. ...
 13-113 7.69e-16

Probable lipid transfer; The members of this family are probably involved in lipid transfer. The family has several highly conserved cysteines, paired in various ways.


Pssm-ID: 433909  Cd Length: 100  Bit Score: 68.66  E-value: 7.69e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7269111     13 VVIAPQWTETKKPPRPSDTSdtsgtsgrdrrtmCPLSIPGIVQNCYATLNA-----FPSKECCKDLKTASKREVTCLCNN 87
Cdd:pfam14368   1 LALALAAQAPAPPPAPAAAS-------------CTLSMLSGLSPCLPYLTGtpaatAPSPACCGALKSAVSTDVTCLCAL 67

                          90       100       110
                  ....*....|....*....|....*....|
gi 7269111     88 VIA-HPDPLYTNTNQ---VNKACGVLDKYA 113
Cdd:pfam14368  68 VTApLPIGFPINVTRalaLPRACGVKTPPS 97
AAI_LTSS cd00010
AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein ...
 65-108 8.66e-03

AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.


Pssm-ID: 237980  Cd Length: 63  Bit Score: 33.17  E-value: 8.66e-03
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|
gi 7269111   65 PSKECCKDLKTASKREVTCLCnNVIAHPDPLYTNTNQVNKA------CGV 108
Cdd:cd00010  15 PPSDCCSGLKSVVKSDPKCLC-AALNGPGASLLGLKNATRAlalpaaCGL 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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