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Conserved domains on  [gi|6016992|emb|CAB57846|]
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mitochondrial PPR repeat protein Ppr6 [Schizosaccharomyces pombe]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP13 pfam12921
Mitochondrial ATPase expression; ATP13 is necessary for the expression of subunit 9 of ...
 221-324 2.73e-24

Mitochondrial ATPase expression; ATP13 is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria.


:

Pssm-ID: 372384  Cd Length: 114  Bit Score: 96.98  E-value: 2.73e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6016992    221 STTYDYLMVGLSRDGKIREIYDLIDTVWGINENSSS----KKVDCGNVTFPTHHTVFSIISALGYLGDVSSAVSLSRKLT 296
Cdd:pfam12921   1 EELDSTIIYSLGYSGQIDLLEKYIKTVWGIDSLGKLvedhTKLTSDSPLYPTSNLLIAIVSSFGYNNDIFSALKIVDKFQ 80

                          90       100
                  ....*....|....*....|....*....
gi 6016992    297 SVYK-INFPELAWRYIIYWSIASLQFRAP 324
Cdd:pfam12921  81 RKYPiIPLPKLFWRRLFQWSIILTDKKED 109
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 117-179 4.02e-23

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


:

Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 92.04  E-value: 4.02e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6016992    117 LILQDADRLGIQFNIVDYTHILRVAMYTGNKHILEYIVARVKEKRIRPSVDYFNAILGVIGGN 179
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
 
Name Accession Description Interval E-value
ATP13 pfam12921
Mitochondrial ATPase expression; ATP13 is necessary for the expression of subunit 9 of ...
 221-324 2.73e-24

Mitochondrial ATPase expression; ATP13 is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria.


Pssm-ID: 372384  Cd Length: 114  Bit Score: 96.98  E-value: 2.73e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6016992    221 STTYDYLMVGLSRDGKIREIYDLIDTVWGINENSSS----KKVDCGNVTFPTHHTVFSIISALGYLGDVSSAVSLSRKLT 296
Cdd:pfam12921   1 EELDSTIIYSLGYSGQIDLLEKYIKTVWGIDSLGKLvedhTKLTSDSPLYPTSNLLIAIVSSFGYNNDIFSALKIVDKFQ 80

                          90       100
                  ....*....|....*....|....*....
gi 6016992    297 SVYK-INFPELAWRYIIYWSIASLQFRAP 324
Cdd:pfam12921  81 RKYPiIPLPKLFWRRLFQWSIILTDKKED 109
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 117-179 4.02e-23

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 92.04  E-value: 4.02e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6016992    117 LILQDADRLGIQFNIVDYTHILRVAMYTGNKHILEYIVARVKEKRIRPSVDYFNAILGVIGGN 179
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
 
Name Accession Description Interval E-value
ATP13 pfam12921
Mitochondrial ATPase expression; ATP13 is necessary for the expression of subunit 9 of ...
 221-324 2.73e-24

Mitochondrial ATPase expression; ATP13 is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria.


Pssm-ID: 372384  Cd Length: 114  Bit Score: 96.98  E-value: 2.73e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6016992    221 STTYDYLMVGLSRDGKIREIYDLIDTVWGINENSSS----KKVDCGNVTFPTHHTVFSIISALGYLGDVSSAVSLSRKLT 296
Cdd:pfam12921   1 EELDSTIIYSLGYSGQIDLLEKYIKTVWGIDSLGKLvedhTKLTSDSPLYPTSNLLIAIVSSFGYNNDIFSALKIVDKFQ 80

                          90       100
                  ....*....|....*....|....*....
gi 6016992    297 SVYK-INFPELAWRYIIYWSIASLQFRAP 324
Cdd:pfam12921  81 RKYPiIPLPKLFWRRLFQWSIILTDKKED 109
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 117-179 4.02e-23

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 92.04  E-value: 4.02e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 6016992    117 LILQDADRLGIQFNIVDYTHILRVAMYTGNKHILEYIVARVKEKRIRPSVDYFNAILGVIGGN 179
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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