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Conserved domains on  [gi|4467121|emb|CAB37555|]
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putative protein [Arabidopsis thaliana]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 13595511)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

CATH:  1.25.40.10
Gene Ontology:  GO:0003723
PubMed:  19004664|23635770|25882680|34065603|18031283|30809817
SCOP:  4001344

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 164-213 2.75e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.45  E-value: 2.75e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 4467121    164 PEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLYN 213
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 132-178 6.42e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 51.21  E-value: 6.42e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 4467121    132 PNAVA---MLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCK 178
Cdd:pfam13041   1 PDVVTyntLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 super family cl33631
pentatricopeptide (PPR) repeat-containing protein; Provisional
 155-292 2.01e-08

pentatricopeptide (PPR) repeat-containing protein; Provisional


The actual alignment was detected with superfamily member PLN03081:

Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 55.26  E-value: 2.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   155 GLMRdKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNgiapNAFSYGVLVQGLYNCNMLDDAVAFCSEMLESGHSP 234
Cdd:PLN03081 350 GLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 4467121   235 NVPTFVELVDAlCRVKG-VEQA----QSAIDTLNQKGFAVNVKAVKEF------------MDKRAPFPSLA--WEAI 292
Cdd:PLN03081 425 NHVTFLAVLSA-CRYSGlSEQGweifQSMSENHRIKPRAMHYACMIELlgreglldeayaMIRRAPFKPTVnmWAAL 500
PPR_2 super family cl38385
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 115-143 8.05e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


The actual alignment was detected with superfamily member pfam13041:

Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 33.88  E-value: 8.05e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 4467121    115 PEDSDEIFKKMKEGGLIPNAV---AMLDGLCK 143
Cdd:pfam13041  19 VEEAFKLFNEMKKRGVKPNVYtytILINGLCK 50
 
Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 164-213 2.75e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.45  E-value: 2.75e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 4467121    164 PEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLYN 213
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 132-178 6.42e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 51.21  E-value: 6.42e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 4467121    132 PNAVA---MLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCK 178
Cdd:pfam13041   1 PDVVTyntLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 155-292 2.01e-08

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 55.26  E-value: 2.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   155 GLMRdKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNgiapNAFSYGVLVQGLYNCNMLDDAVAFCSEMLESGHSP 234
Cdd:PLN03081 350 GLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 4467121   235 NVPTFVELVDAlCRVKG-VEQA----QSAIDTLNQKGFAVNVKAVKEF------------MDKRAPFPSLA--WEAI 292
Cdd:PLN03081 425 NHVTFLAVLSA-CRYSGlSEQGweifQSMSENHRIKPRAMHYACMIELlgreglldeayaMIRRAPFKPTVnmWAAL 500
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 199-248 6.81e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.13  E-value: 6.81e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 4467121    199 PNAFSYGVLVQGLYNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCR 248
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 167-201 1.12e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.06  E-value: 1.12e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 4467121    167 VIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNA 201
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03077 PLN03077
Protein ECB2; Provisional
 120-210 4.68e-06

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 47.92  E-value: 4.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   120 EIFKKMKEGGLIPNAVAMLDGLC---KDGLVQEAMKLFGLMRDK-GTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQnn 195
Cdd:PLN03077 575 ELFNRMVESGVNPDEVTFISLLCacsRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-- 652

                         90
                 ....*....|....*
gi 4467121   196 gIAPNAFSYGVLVQG 210
Cdd:PLN03077 653 -ITPDPAVWGALLNA 666
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 136-164 1.29e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 1.29e-04
                          10        20
                  ....*....|....*....|....*....
gi 4467121    136 AMLDGLCKDGLVQEAMKLFGLMRDKGTIP 164
Cdd:TIGR00756   5 TLIDGLCKAGRVEEALELFKEMKERGIEP 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 202-236 1.19e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 1.19e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 4467121    202 FSYGVLVQGLYNCNMLDDAVAFCSEMLESGHSPNV 236
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 115-143 8.05e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 33.88  E-value: 8.05e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 4467121    115 PEDSDEIFKKMKEGGLIPNAV---AMLDGLCK 143
Cdd:pfam13041  19 VEEAFKLFNEMKKRGVKPNVYtytILINGLCK 50
 
Name Accession Description Interval E-value
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 164-213 2.75e-12

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 60.45  E-value: 2.75e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 4467121    164 PEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLYN 213
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 132-178 6.42e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 51.21  E-value: 6.42e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 4467121    132 PNAVA---MLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCK 178
Cdd:pfam13041   1 PDVVTyntLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 155-292 2.01e-08

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 55.26  E-value: 2.01e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   155 GLMRdKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNgiapNAFSYGVLVQGLYNCNMLDDAVAFCSEMLESGHSP 234
Cdd:PLN03081 350 GLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 4467121   235 NVPTFVELVDAlCRVKG-VEQA----QSAIDTLNQKGFAVNVKAVKEF------------MDKRAPFPSLA--WEAI 292
Cdd:PLN03081 425 NHVTFLAVLSA-CRYSGlSEQGweifQSMSENHRIKPRAMHYACMIELlgreglldeayaMIRRAPFKPTVnmWAAL 500
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 121-264 4.30e-08

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 54.50  E-value: 4.30e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121    121 IFKKMKEGGLIPNAV---AMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGI 197
Cdd:PLN03218  636 IYDDMKKKGVKPDEVffsALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 4467121    198 APNAFSYGVLVQGLYNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDAlCRVKGveQAQSAIDTLNQ 264
Cdd:PLN03218  716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA-SERKD--DADVGLDLLSQ 779
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 199-248 6.81e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 48.13  E-value: 6.81e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 4467121    199 PNAFSYGVLVQGLYNCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCR 248
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 116-251 9.19e-08

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 53.34  E-value: 9.19e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   116 EDSDEIFKKMKEGGLIpNAVAMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKM-QN 194
Cdd:PLN03081 377 EDARNVFDRMPRKNLI-SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMsEN 455

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   195 NGIAPNAFSYGVLVQGLYNCNMLDDAVAFCSEmlesghSPNVPTfVELVDAL---CRVKG 251
Cdd:PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRR------APFKPT-VNMWAALltaCRIHK 508
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 167-201 1.12e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.06  E-value: 1.12e-07
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 4467121    167 VIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNA 201
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 120-247 2.60e-07

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 51.80  E-value: 2.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121    120 EIFKKMKEGGLIPNAVAM--LDGLCKD-GLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNG 196
Cdd:PLN03218  670 EILQDARKQGIKLGTVSYssLMGACSNaKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 4467121    197 IAPNAFSYGVLVQGLYNCNMLDDAVAFCSEMLESGHSPNvPTFVELVDALC 247
Cdd:PLN03218  750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN-LVMCRCITGLC 799
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 120-278 1.85e-06

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 49.49  E-value: 1.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121    120 EIFKKMKEGGLIPNA---VAMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKM--QN 194
Cdd:PLN03218  493 EVFHEMVNAGVEANVhtfGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMkaET 572

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121    195 NGIAPNAFSYGVLVQGLYNC----------NMLDD------------AVAFCS-------------EMLESGHSPNVPTF 239
Cdd:PLN03218  573 HPIDPDHITVGALMKACANAgqvdrakevyQMIHEynikgtpevytiAVNSCSqkgdwdfalsiydDMKKKGVKPDEVFF 652

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 4467121    240 VELVDALCRVKGVEQAQSAIDTLNQKGFAVNVKAVKEFM 278
Cdd:PLN03218  653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 152-208 2.97e-06

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 43.89  E-value: 2.97e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 4467121    152 KLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLV 208
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PLN03077 PLN03077
Protein ECB2; Provisional
 120-210 4.68e-06

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 47.92  E-value: 4.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   120 EIFKKMKEGGLIPNAVAMLDGLC---KDGLVQEAMKLFGLMRDK-GTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQnn 195
Cdd:PLN03077 575 ELFNRMVESGVNPDEVTFISLLCacsRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-- 652

                         90
                 ....*....|....*
gi 4467121   196 gIAPNAFSYGVLVQG 210
Cdd:PLN03077 653 -ITPDPAVWGALLNA 666
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 129-158 6.75e-06

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 41.95  E-value: 6.75e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 4467121    129 GLIPNAV---AMLDGLCKDGLVQEAMKLFGLMR 158
Cdd:pfam12854   2 GLKPDVVtynTLINGLCRAGRVDEAFELLDEME 34
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 150-270 1.96e-05

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 46.02  E-value: 1.96e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121    150 AMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLYNCNMLDDAVAFCSEMLE 229
Cdd:PLN03218  633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 4467121    230 SGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFAVN 270
Cdd:PLN03218  713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 136-161 2.14e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.53  E-value: 2.14e-05
                          10        20
                  ....*....|....*....|....*.
gi 4467121    136 AMLDGLCKDGLVQEAMKLFGLMRDKG 161
Cdd:pfam01535   5 SLISGYCKNGKLEEALELFKEMKEKG 30
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 167-197 2.29e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 40.53  E-value: 2.29e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 4467121    167 VIYTAVVEAFCKAHKIEDAKRIFRKMQNNGI 197
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 160-192 3.59e-05

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 40.02  E-value: 3.59e-05
                          10        20        30
                  ....*....|....*....|....*....|...
gi 4467121    160 KGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKM 192
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 136-255 6.24e-05

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 44.48  E-value: 6.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121    136 AMLDGLCKDGLVQEAMKLFGLMRD---KGTiPEVviYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLY 212
Cdd:PLN03218  584 ALMKACANAGQVDRAKEVYQMIHEyniKGT-PEV--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 4467121    213 NCNMLDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQA 255
Cdd:PLN03218  661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 102-245 8.80e-05

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 44.09  E-value: 8.80e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   102 PKPeQYPQEPLPP--PEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQEAMKLFGLMRDKG--TIPeVVIYTAVVEAFC 177
Cdd:PLN03081  57 PRP-RLKPEPIRIevSESKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCpfTLP-ASTYDALVEACI 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   178 KAHKIEDAKRIFRKMQNNGIAP-------------------------------NAFSYGVLVQGLYNCNMLDDAVAFCSE 226
Cdd:PLN03081 135 ALKSIRCVKAVYWHVESSGFEPdqymmnrvllmhvkcgmlidarrlfdemperNLASWGTIIGGLVDAGNYREAFALFRE 214

                        170
                 ....*....|....*....
gi 4467121   227 MLESGHSPNVPTFVELVDA 245
Cdd:PLN03081 215 MWEDGSDAEPRTFVVMLRA 233
PLN03077 PLN03077
Protein ECB2; Provisional
 115-249 9.44e-05

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 44.07  E-value: 9.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   115 PEDSDEIFKKMKEGGLIPNAV---AMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRK 191
Cdd:PLN03077 370 PDKALETYALMEQDNVSPDEItiaSVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 4467121   192 MQNNgiapNAFSYGVLVQGLYNCNMLDDAVAFCSEMLESgHSPNVPTFVELVDALCRV 249
Cdd:PLN03077 450 IPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARI 502
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 136-164 1.29e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.59  E-value: 1.29e-04
                          10        20
                  ....*....|....*....|....*....
gi 4467121    136 AMLDGLCKDGLVQEAMKLFGLMRDKGTIP 164
Cdd:TIGR00756   5 TLIDGLCKAGRVEEALELFKEMKERGIEP 33
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 130-210 2.02e-04

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 42.94  E-value: 2.02e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121    130 LIPNAV----AMLDGLC---KDglVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAF 202
Cdd:PLN03218  431 LIRNPTlstfNMLMSVCassQD--IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508


                  ....*...
gi 4467121    203 SYGVLVQG 210
Cdd:PLN03218  509 TFGALIDG 516
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 142-272 3.00e-04

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 42.56  E-value: 3.00e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121    142 CK-DGLVQEAMKLFGLMRDkgtiPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLYNCNMLDDA 220
Cdd:PLN03218  416 CKkQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAM 491

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 4467121    221 VAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKgfavNVK 272
Cdd:PLN03218  492 FEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK----NVK 539
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 195-227 1.13e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 35.78  E-value: 1.13e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 4467121    195 NGIAPNAFSYGVLVQGLYNCNMLDDAVAFCSEM 227
Cdd:pfam12854   1 KGLKPDVVTYNTLINGLCRAGRVDEAFELLDEM 33
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 202-236 1.19e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.89  E-value: 1.19e-03
                          10        20        30
                  ....*....|....*....|....*....|....*
gi 4467121    202 FSYGVLVQGLYNCNMLDDAVAFCSEMLESGHSPNV 236
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PLN03077 PLN03077
Protein ECB2; Provisional
 137-227 1.24e-03

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 40.22  E-value: 1.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   137 MLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRKMQNN-GIAPNAFSYGVLVQGLYNCN 215
Cdd:PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAG 639

                         90
                 ....*....|..
gi 4467121   216 MLDDAVAFCSEM 227
Cdd:PLN03077 640 KLTEAYNFINKM 651
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 187-239 2.30e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.80  E-value: 2.30e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 4467121    187 RIFRKMQNNGIAPNAFSYGVLVQGLYNCNMLDDAVAFCSEMLESGHSPNVPTF 239
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTY 53
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 115-279 5.23e-03

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 38.31  E-value: 5.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   115 PEDSDEIFKKMKEGGLIPNA---VAMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVEAFCKAHKIEDAKRIFRK 191
Cdd:PLN03081 205 YREAFALFREMWEDGSDAEPrtfVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDG 284

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 4467121   192 M-QNNGIAPNAFSYGVLVQGlYNcnmlDDAVAFCSEMLESGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFAVN 270
Cdd:PLN03081 285 MpEKTTVAWNSMLAGYALHG-YS----EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359


                 ....*....
gi 4467121   271 VKAVKEFMD 279
Cdd:PLN03081 360 IVANTALVD 368
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 115-143 8.05e-03

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 33.88  E-value: 8.05e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 4467121    115 PEDSDEIFKKMKEGGLIPNAV---AMLDGLCK 143
Cdd:pfam13041  19 VEEAFKLFNEMKKRGVKPNVYtytILINGLCK 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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