NCBI Conserved Domain Search

Conserved domains on [gi|2661821|emb|CAA74880|]

View

Hoxc4 protein, partial [Danio rerio]

Protein Classification

homeobox domain-containing protein( domain architecture ID 21)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

CATH: 1.10.10.60

Gene Ontology: GO:0003677

PubMed: 26464018|1357790

SCOP: 4000291

Graphical summary

Zoom to residue level

show extra options »

Show site features Horizontal zoom: ×

List of domain hits

Name

Accession

Description

Interval

E-value

Homeodomain super family

cl47488

Homeodomain;

1-17

9.79e-07

Homeodomain;

The actual alignment was detected with superfamily member pfam00046:

Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 41.33 E-value: 9.79e-07

                         10
                 ....*....|....*..
gi 2661821     1 ERQIKIWFQNRRMKWKK 17
Cdd:pfam00046 41 ERQVKVWFQNRRAKWKR 57

Name

Accession

Description

Interval

E-value

Homeodomain

pfam00046

Homeodomain;

1-17

9.79e-07

Homeodomain;

Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 41.33 E-value: 9.79e-07

                         10
                 ....*....|....*..
gi 2661821     1 ERQIKIWFQNRRMKWKK 17
Cdd:pfam00046 41 ERQVKVWFQNRRAKWKR 57

HOX

smart00389

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...

1-16

6.02e-05

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes

Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 36.84 E-value: 6.02e-05

                          10
                  ....*....|....*.
gi 2661821      1 ERQIKIWFQNRRMKWK 16
Cdd:smart00389 42 ERQVKVWFQNRRAKWK 57

homeodomain

cd00086

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...

1-19

9.62e-05

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 36.07 E-value: 9.62e-05

                       10
               ....*....|....*....
gi 2661821   1 ERQIKIWFQNRRMKWKKDH 19
Cdd:cd00086 41 ERQVKIWFQNRRAKLKRSE 59

Name

Accession

Description

Interval

E-value

Homeodomain

pfam00046

Homeodomain;

1-17

9.79e-07

Homeodomain;

Pssm-ID: 459649 [Multi-domain] Cd Length: 57 Bit Score: 41.33 E-value: 9.79e-07

                         10
                 ....*....|....*..
gi 2661821     1 ERQIKIWFQNRRMKWKK 17
Cdd:pfam00046 41 ERQVKVWFQNRRAKWKR 57

HOX

smart00389

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...

1-16

6.02e-05

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes

Pssm-ID: 197696 [Multi-domain] Cd Length: 57 Bit Score: 36.84 E-value: 6.02e-05

                          10
                  ....*....|....*.
gi 2661821      1 ERQIKIWFQNRRMKWK 16
Cdd:smart00389 42 ERQVKVWFQNRRAKWK 57

homeodomain

cd00086

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...

1-19

9.62e-05

Pssm-ID: 238039 [Multi-domain] Cd Length: 59 Bit Score: 36.07 E-value: 9.62e-05

                       10
               ....*....|....*....
gi 2661821   1 ERQIKIWFQNRRMKWKKDH 19
Cdd:cd00086 41 ERQVKIWFQNRRAKLKRSE 59

Blast search parameters

Data Source:	Precalculated data, version = cdd.v.3.21
Preset Options:	Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01