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Conserved domains on  [gi|825699|emb|CAA26936|]
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oxytocin precursor COOH-end (1 is 3rd base in codon), partial [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Hormone_5 super family cl02418
Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5
 1-37 3.62e-08

Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5


The actual alignment was detected with superfamily member smart00003:

Pssm-ID: 470572  Cd Length: 78  Bit Score: 44.33  E-value: 3.62e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 825699       1 YLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPAC 37
Cdd:smart00003 42 YLPSPCQSGGKPCGSGGRCAAPGVCCSSESCAADPSC 78
 
Name Accession Description Interval E-value
NH smart00003
Neurohypophysial hormones; Vasopressin/oxytocin gene family.
 1-37 3.62e-08

Neurohypophysial hormones; Vasopressin/oxytocin gene family.


Pssm-ID: 128323  Cd Length: 78  Bit Score: 44.33  E-value: 3.62e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 825699       1 YLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPAC 37
Cdd:smart00003 42 YLPSPCQSGGKPCGSGGRCAAPGVCCSSESCAADPSC 78
Hormone_5 pfam00184
Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5
 1-37 3.23e-07

Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5


Pssm-ID: 459704  Cd Length: 79  Bit Score: 41.93  E-value: 3.23e-07
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 825699      1 YLPSPCQSGQKACGS-GGRCAVLGLCCSPDGCHADPAC 37
Cdd:pfam00184 42 YLPSPCQAGGKPCGSnGGRCAAPGICCTSESCSLDPSC 79
 
Name Accession Description Interval E-value
NH smart00003
Neurohypophysial hormones; Vasopressin/oxytocin gene family.
 1-37 3.62e-08

Neurohypophysial hormones; Vasopressin/oxytocin gene family.


Pssm-ID: 128323  Cd Length: 78  Bit Score: 44.33  E-value: 3.62e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 825699       1 YLPSPCQSGQKACGSGGRCAVLGLCCSPDGCHADPAC 37
Cdd:smart00003 42 YLPSPCQSGGKPCGSGGRCAAPGVCCSSESCAADPSC 78
Hormone_5 pfam00184
Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5
 1-37 3.23e-07

Neurohypophysial hormones, C-terminal Domain; N-terminal Domain is in hormone5


Pssm-ID: 459704  Cd Length: 79  Bit Score: 41.93  E-value: 3.23e-07
                         10        20        30
                 ....*....|....*....|....*....|....*...
gi 825699      1 YLPSPCQSGQKACGS-GGRCAVLGLCCSPDGCHADPAC 37
Cdd:pfam00184 42 YLPSPCQAGGKPCGSnGGRCAAPGICCTSESCSLDPSC 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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