F-box domain-containing protein [Caenorhabditis elegans]
Protein Classification
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||
| FTH | pfam01827 | FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is ... |
242-406 | 1.71e-34 | ||||
FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is found in many proteins from C. elegans. The domain is found associated with the F-box pfam00646. This domain is named FTH after FOG-2 homology domain. : Pssm-ID: 396410 Cd Length: 141 Bit Score: 125.38 E-value: 1.71e-34
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| F-box_CeFBXA-like | cd22150 | F-box domain found in Caenorhabditis elegans F-box domain-containing proteins (CeFBXA) and ... |
128-170 | 3.17e-07 | ||||
F-box domain found in Caenorhabditis elegans F-box domain-containing proteins (CeFBXA) and similar proteins; The family includes a group of uncharacterized Caenorhabditis elegans F-box domain-containing proteins. They may be components of SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. : Pssm-ID: 438921 Cd Length: 46 Bit Score: 46.71 E-value: 3.17e-07
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| HTH_48 super family | cl39372 | HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ... |
76-112 | 2.05e-06 | ||||
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats. The actual alignment was detected with superfamily member pfam17906: Pssm-ID: 465558 [Multi-domain] Cd Length: 50 Bit Score: 44.43 E-value: 2.05e-06
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| Name | Accession | Description | Interval | E-value | ||||
| FTH | pfam01827 | FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is ... |
242-406 | 1.71e-34 | ||||
FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is found in many proteins from C. elegans. The domain is found associated with the F-box pfam00646. This domain is named FTH after FOG-2 homology domain. Pssm-ID: 396410 Cd Length: 141 Bit Score: 125.38 E-value: 1.71e-34
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| F-box_CeFBXA-like | cd22150 | F-box domain found in Caenorhabditis elegans F-box domain-containing proteins (CeFBXA) and ... |
128-170 | 3.17e-07 | ||||
F-box domain found in Caenorhabditis elegans F-box domain-containing proteins (CeFBXA) and similar proteins; The family includes a group of uncharacterized Caenorhabditis elegans F-box domain-containing proteins. They may be components of SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438921 Cd Length: 46 Bit Score: 46.71 E-value: 3.17e-07
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| HTH_48 | pfam17906 | HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ... |
76-112 | 2.05e-06 | ||||
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats. Pssm-ID: 465558 [Multi-domain] Cd Length: 50 Bit Score: 44.43 E-value: 2.05e-06
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| FBOX | smart00256 | A Receptor for Ubiquitination Targets; |
131-170 | 1.59e-04 | ||||
A Receptor for Ubiquitination Targets; Pssm-ID: 197608 Cd Length: 41 Bit Score: 38.96 E-value: 1.59e-04
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| Name | Accession | Description | Interval | E-value | ||||
| FTH | pfam01827 | FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is ... |
242-406 | 1.71e-34 | ||||
FTH domain; This presumed domain is likely to be a protein-protein interaction module. It is found in many proteins from C. elegans. The domain is found associated with the F-box pfam00646. This domain is named FTH after FOG-2 homology domain. Pssm-ID: 396410 Cd Length: 141 Bit Score: 125.38 E-value: 1.71e-34
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| F-box_CeFBXA-like | cd22150 | F-box domain found in Caenorhabditis elegans F-box domain-containing proteins (CeFBXA) and ... |
128-170 | 3.17e-07 | ||||
F-box domain found in Caenorhabditis elegans F-box domain-containing proteins (CeFBXA) and similar proteins; The family includes a group of uncharacterized Caenorhabditis elegans F-box domain-containing proteins. They may be components of SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Pssm-ID: 438921 Cd Length: 46 Bit Score: 46.71 E-value: 3.17e-07
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| HTH_48 | pfam17906 | HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase ... |
76-112 | 2.05e-06 | ||||
HTH domain in Mos1 transposase; The N-terminal domain of the Mos1 Mariner transposase comprises two HTH domains. This HTH domain binds in the DNA major groove to the transposons inverted repeats. Pssm-ID: 465558 [Multi-domain] Cd Length: 50 Bit Score: 44.43 E-value: 2.05e-06
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| FBOX | smart00256 | A Receptor for Ubiquitination Targets; |
131-170 | 1.59e-04 | ||||
A Receptor for Ubiquitination Targets; Pssm-ID: 197608 Cd Length: 41 Bit Score: 38.96 E-value: 1.59e-04
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| Blast search parameters | ||||
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