NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|3881057|emb|CAA19528|]
View 

FIP (Fungus-Induced Protein) Related [Caenorhabditis elegans]

Protein Classification

Fungus-induced domain-containing protein( domain architecture ID 10566898)

Fungus-induced domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
Fungus-induced pfam10917
Fungus-induced protein; This entry represents fungus-induced proteins which may have role in ...
1-24 2.36e-06

Fungus-induced protein; This entry represents fungus-induced proteins which may have role in hypoxia response.


:

Pssm-ID: 371300  Cd Length: 49  Bit Score: 39.08  E-value: 2.36e-06
                         10        20
                 ....*....|....*....|....
gi 3881057     1 MNVYSVCVFAILAISSVSGIFLPQ 24
Cdd:pfam10917  1 MNFYSVFVFAILAISSVSGIFKPG 24
 
Name Accession Description Interval E-value
Fungus-induced pfam10917
Fungus-induced protein; This entry represents fungus-induced proteins which may have role in ...
1-24 2.36e-06

Fungus-induced protein; This entry represents fungus-induced proteins which may have role in hypoxia response.


Pssm-ID: 371300  Cd Length: 49  Bit Score: 39.08  E-value: 2.36e-06
                         10        20
                 ....*....|....*....|....
gi 3881057     1 MNVYSVCVFAILAISSVSGIFLPQ 24
Cdd:pfam10917  1 MNFYSVFVFAILAISSVSGIFKPG 24
 
Name Accession Description Interval E-value
Fungus-induced pfam10917
Fungus-induced protein; This entry represents fungus-induced proteins which may have role in ...
1-24 2.36e-06

Fungus-induced protein; This entry represents fungus-induced proteins which may have role in hypoxia response.


Pssm-ID: 371300  Cd Length: 49  Bit Score: 39.08  E-value: 2.36e-06
                         10        20
                 ....*....|....*....|....
gi 3881057     1 MNVYSVCVFAILAISSVSGIFLPQ 24
Cdd:pfam10917  1 MNFYSVFVFAILAISSVSGIFKPG 24
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH