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Conserved domains on  [gi|2827708|emb|CAA16681|]
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myb - related protein [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 1-122 8.00e-49

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 170.93  E-value: 8.00e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827708     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGnWIALPQKIGLRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIIC 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 2827708    81 NLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLlnKQR 122
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL--RQR 119
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-122 8.00e-49

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 170.93  E-value: 8.00e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827708     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGnWIALPQKIGLRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIIC 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 2827708    81 NLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLlnKQR 122
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL--RQR 119
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-110 3.67e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 73.67  E-value: 3.67e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827708   11 NVKKGPWSPEEDAKLKDYIENSGTGgNWIALPQKIGlRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICNLYVTIGSRW 90
Cdd:COG5147  17 KRKGGSWKRTEDEDLKALVKKLGPN-NWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94

                        90       100
                ....*....|....*....|
gi 2827708   91 SIIAAQLPGRTDNDIKNYWN 110
Cdd:COG5147  95 STIADYKDRRTAQQCVERYV 114
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 68-113 1.08e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 59.05  E-value: 1.08e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2827708     68 HGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRL 113
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
71-115 8.20e-08

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 48.37  E-value: 8.20e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2827708      71 FSEEEDNIICNLYVTIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK 115
Cdd:smart00717   4 WTEEEDELLIELVKKYGKnNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-113 8.96e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 47.96  E-value: 8.96e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 2827708   71 FSEEEDNIICNLYVTIGS-RWSIIAAQLPGRTDNDIKNYWNTRL 113
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKnNWEKIAKELPGRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 1-122 8.00e-49

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 170.93  E-value: 8.00e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827708     1 MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGnWIALPQKIGLRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIIC 80
Cdd:PLN03091   1 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGC-WSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 2827708    81 NLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLlnKQR 122
Cdd:PLN03091  80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKL--RQR 119
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 5-120 5.10e-46

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 157.93  E-value: 5.10e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827708     5 PCCDKANVKKGPWSPEEDAKLKDYIENSGTGgNWIALPQKIGLRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICNLYV 84
Cdd:PLN03212  16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEG-RWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHR 94

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 2827708    85 TIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLNK 120
Cdd:PLN03212  95 LLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 11-110 3.67e-14

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 73.67  E-value: 3.67e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827708   11 NVKKGPWSPEEDAKLKDYIENSGTGgNWIALPQKIGlRRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICNLYVTIGSRW 90
Cdd:COG5147  17 KRKGGSWKRTEDEDLKALVKKLGPN-NWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW 94

                        90       100
                ....*....|....*....|
gi 2827708   91 SIIAAQLPGRTDNDIKNYWN 110
Cdd:COG5147  95 STIADYKDRRTAQQCVERYV 114
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 68-113 1.08e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 59.05  E-value: 1.08e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2827708     68 HGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRL 113
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQNYL 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 14-62 1.76e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 58.67  E-value: 1.76e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2827708     14 KGPWSPEEDAKLKDYIENSgtGGNWIALPQKIGlRRCGKSCRLRWLNYL 62
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKL--GNRWKKIAKLLP-GRTDNQCKNRWQNYL 46
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 17-76 3.69e-10

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 55.01  E-value: 3.69e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827708     17 WSPEEDAKLKDYIENsgTGGNWIALPQKIGlRRCGKSCRLRWLNYLRPNIKHGGFSEEED 76
Cdd:pfam13921   1 WTEEEDEKLLKLVEK--YGNDWKQIAKELG-RRTPKQCFDRWRRKLNPKISRGPWSKEED 57
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
71-115 8.20e-08

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 48.37  E-value: 8.20e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2827708      71 FSEEEDNIICNLYVTIGS-RWSIIAAQLPGRTDNDIKNYWNTRLKK 115
Cdd:smart00717   4 WTEEEDELLIELVKKYGKnNWEKIAKELPGRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 71-113 8.96e-08

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 47.96  E-value: 8.96e-08
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 2827708   71 FSEEEDNIICNLYVTIGS-RWSIIAAQLPGRTDNDIKNYWNTRL 113
Cdd:cd00167   2 WTEEEDELLLEAVKKYGKnNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
14-64 9.40e-08

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 47.99  E-value: 9.40e-08
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2827708      14 KGPWSPEEDAKLKDYIENSGTgGNWIALPQKIGlRRCGKSCRLRWLNYLRP 64
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGK-NNWEKIAKELP-GRTAEQCRERWRNLLKP 49
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 16-62 2.34e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 46.80  E-value: 2.34e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 2827708   16 PWSPEEDAKLKDYIENSGTgGNWIALPQKIGlRRCGKSCRLRWLNYL 62
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGK-NNWEKIAKELP-GRTPKQCRERWRNLL 45
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 71-117 5.80e-05

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 40.37  E-value: 5.80e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2827708     71 FSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKL 117
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWRRKLNPKI 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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