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Conserved domains on  [gi|2827637|emb|CAA16591|]
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putative protein [Arabidopsis thaliana]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
DUF247 pfam03140
Plant protein of unknown function; The function of the plant proteins constituting this family ...
295-662 1.99e-138

Plant protein of unknown function; The function of the plant proteins constituting this family is unknown.


:

Pssm-ID: 460823  Cd Length: 390  Bit Score: 410.86  E-value: 1.99e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637    295 IYKVPNKLRRLNPDAYTPRLVSFGPLHRGKEELQAMEDQKYRYLLSFI---PRTNSSLEDLVRLARTWEQNARSCYAEDV 371
Cdd:pfam03140   1 IYRVPASLREVNPEAYTPQVVSIGPYHHGKPELQPMEEHKLRALRRFLkrsGRSGKSLEDLVAAIEELEERARACYAEDI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637    372 KLHSDEFVEMLVVDGSFLVELLLRSHYPRLRGENDR-IFGNSMMITDVCRDMILIENQLPFFVVKEIFLLLLNyyQQGTP 450
Cdd:pfam03140  81 DLSSEEFVEMMLLDGCFLLEFLLKVYEGEDDDGGYSnEFDKPWVLPDILRDLLLLENQLPFFVLEKLFELTGP--GESPP 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637    451 SIIQLAQRHFSYFLSRID---DEKFITEPEHFVDLLRSCYLPQFPIKLEYTTVKVDNAPE-------ATELHTAGVRFKP 520
Cdd:pfam03140 159 PSVLPVLEFFRELSPSPLestEEADSSKPLHLLDLLRMSLVPGPTPPEESTPGSLSKDKLkselipsATELREAGVKFKP 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637    521 --AETSSCLLDISF-ADGVLKIPTIVVDDLTESLYKNIIGFEQCRCSNKNFL--DYIMLLGCFIKSPTDADLLIHSGIIV 595
Cdd:pfam03140 239 kgSKTTRSLLDIKFdKGGVLEIPPLTVDDNTESLLRNLIAFEQCHPGNGPLYvtSYVSFMDQLIDTAEDVELLRRKGIIE 318
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2827637    596 NYLGNSVDVSNLFNSISKEVIYDrRFYFSMLSENLQAYCNTPWNRWKAILRRDYFHNPWAVASVFAA 662
Cdd:pfam03140 319 NWLGSDEEVADLFNGLCKGVVFD-SNYYSGVCEEVNKYCRKRWNRWKAILRHTYFSNPWTIISLVAA 384
Peptidase_C97 pfam05903
PPPDE putative peptidase domain; The PPPDE superfamily (after Permuted Papain fold Peptidases ...
18-154 1.22e-61

PPPDE putative peptidase domain; The PPPDE superfamily (after Permuted Papain fold Peptidases of DsRNA viruses and Eukaryotes), consists of predicted thiol peptidases with a circularly permuted papain-like fold. The inference of the likely DUB function of the PPPDE superfamily proteins is based on the fusions of the catalytic domain to Ub-binding PUG (PUB)/UBA domains and a novel alpha-helical Ub-associated domain (the PUL domain, after PLAP, Ufd3p and Lub1p).


:

Pssm-ID: 461775  Cd Length: 151  Bit Score: 202.57  E-value: 1.22e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637     18 PVYLNVYDLTPMN------VYGYWLGI---GIYHSGLEVHGVEYGYGAHEKSSSGIFEVEPKK-CPGFTFRKSILVGETE 87
Cdd:pfam05903   2 PVYLNVYDLSPDNyglarrYYPTLLGKqidGIFHTGVEVYGVEYFFGGHEKGSGGIFELPPGTtCPGFTPRESIDIGTTE 81
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637     88 MKAKEVRSFMEKLSEEYQGNKYHLITRNCNHFCNHVSLKLTHKSIPSWVNRLARLGF---LCNCVLPACL 154
Cdd:pfam05903  82 VTEEEVRDYLEELSEEYTGDKYNLLSNNCNHFTDELCQFLTGKPIPSWINRLARIVLstpFGQCLLPMLL 151
 
Name Accession Description Interval E-value
DUF247 pfam03140
Plant protein of unknown function; The function of the plant proteins constituting this family ...
295-662 1.99e-138

Plant protein of unknown function; The function of the plant proteins constituting this family is unknown.


Pssm-ID: 460823  Cd Length: 390  Bit Score: 410.86  E-value: 1.99e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637    295 IYKVPNKLRRLNPDAYTPRLVSFGPLHRGKEELQAMEDQKYRYLLSFI---PRTNSSLEDLVRLARTWEQNARSCYAEDV 371
Cdd:pfam03140   1 IYRVPASLREVNPEAYTPQVVSIGPYHHGKPELQPMEEHKLRALRRFLkrsGRSGKSLEDLVAAIEELEERARACYAEDI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637    372 KLHSDEFVEMLVVDGSFLVELLLRSHYPRLRGENDR-IFGNSMMITDVCRDMILIENQLPFFVVKEIFLLLLNyyQQGTP 450
Cdd:pfam03140  81 DLSSEEFVEMMLLDGCFLLEFLLKVYEGEDDDGGYSnEFDKPWVLPDILRDLLLLENQLPFFVLEKLFELTGP--GESPP 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637    451 SIIQLAQRHFSYFLSRID---DEKFITEPEHFVDLLRSCYLPQFPIKLEYTTVKVDNAPE-------ATELHTAGVRFKP 520
Cdd:pfam03140 159 PSVLPVLEFFRELSPSPLestEEADSSKPLHLLDLLRMSLVPGPTPPEESTPGSLSKDKLkselipsATELREAGVKFKP 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637    521 --AETSSCLLDISF-ADGVLKIPTIVVDDLTESLYKNIIGFEQCRCSNKNFL--DYIMLLGCFIKSPTDADLLIHSGIIV 595
Cdd:pfam03140 239 kgSKTTRSLLDIKFdKGGVLEIPPLTVDDNTESLLRNLIAFEQCHPGNGPLYvtSYVSFMDQLIDTAEDVELLRRKGIIE 318
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2827637    596 NYLGNSVDVSNLFNSISKEVIYDrRFYFSMLSENLQAYCNTPWNRWKAILRRDYFHNPWAVASVFAA 662
Cdd:pfam03140 319 NWLGSDEEVADLFNGLCKGVVFD-SNYYSGVCEEVNKYCRKRWNRWKAILRHTYFSNPWTIISLVAA 384
Peptidase_C97 pfam05903
PPPDE putative peptidase domain; The PPPDE superfamily (after Permuted Papain fold Peptidases ...
18-154 1.22e-61

PPPDE putative peptidase domain; The PPPDE superfamily (after Permuted Papain fold Peptidases of DsRNA viruses and Eukaryotes), consists of predicted thiol peptidases with a circularly permuted papain-like fold. The inference of the likely DUB function of the PPPDE superfamily proteins is based on the fusions of the catalytic domain to Ub-binding PUG (PUB)/UBA domains and a novel alpha-helical Ub-associated domain (the PUL domain, after PLAP, Ufd3p and Lub1p).


Pssm-ID: 461775  Cd Length: 151  Bit Score: 202.57  E-value: 1.22e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637     18 PVYLNVYDLTPMN------VYGYWLGI---GIYHSGLEVHGVEYGYGAHEKSSSGIFEVEPKK-CPGFTFRKSILVGETE 87
Cdd:pfam05903   2 PVYLNVYDLSPDNyglarrYYPTLLGKqidGIFHTGVEVYGVEYFFGGHEKGSGGIFELPPGTtCPGFTPRESIDIGTTE 81
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637     88 MKAKEVRSFMEKLSEEYQGNKYHLITRNCNHFCNHVSLKLTHKSIPSWVNRLARLGF---LCNCVLPACL 154
Cdd:pfam05903  82 VTEEEVRDYLEELSEEYTGDKYNLLSNNCNHFTDELCQFLTGKPIPSWINRLARIVLstpFGQCLLPMLL 151
 
Name Accession Description Interval E-value
DUF247 pfam03140
Plant protein of unknown function; The function of the plant proteins constituting this family ...
295-662 1.99e-138

Plant protein of unknown function; The function of the plant proteins constituting this family is unknown.


Pssm-ID: 460823  Cd Length: 390  Bit Score: 410.86  E-value: 1.99e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637    295 IYKVPNKLRRLNPDAYTPRLVSFGPLHRGKEELQAMEDQKYRYLLSFI---PRTNSSLEDLVRLARTWEQNARSCYAEDV 371
Cdd:pfam03140   1 IYRVPASLREVNPEAYTPQVVSIGPYHHGKPELQPMEEHKLRALRRFLkrsGRSGKSLEDLVAAIEELEERARACYAEDI 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637    372 KLHSDEFVEMLVVDGSFLVELLLRSHYPRLRGENDR-IFGNSMMITDVCRDMILIENQLPFFVVKEIFLLLLNyyQQGTP 450
Cdd:pfam03140  81 DLSSEEFVEMMLLDGCFLLEFLLKVYEGEDDDGGYSnEFDKPWVLPDILRDLLLLENQLPFFVLEKLFELTGP--GESPP 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637    451 SIIQLAQRHFSYFLSRID---DEKFITEPEHFVDLLRSCYLPQFPIKLEYTTVKVDNAPE-------ATELHTAGVRFKP 520
Cdd:pfam03140 159 PSVLPVLEFFRELSPSPLestEEADSSKPLHLLDLLRMSLVPGPTPPEESTPGSLSKDKLkselipsATELREAGVKFKP 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637    521 --AETSSCLLDISF-ADGVLKIPTIVVDDLTESLYKNIIGFEQCRCSNKNFL--DYIMLLGCFIKSPTDADLLIHSGIIV 595
Cdd:pfam03140 239 kgSKTTRSLLDIKFdKGGVLEIPPLTVDDNTESLLRNLIAFEQCHPGNGPLYvtSYVSFMDQLIDTAEDVELLRRKGIIE 318
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2827637    596 NYLGNSVDVSNLFNSISKEVIYDrRFYFSMLSENLQAYCNTPWNRWKAILRRDYFHNPWAVASVFAA 662
Cdd:pfam03140 319 NWLGSDEEVADLFNGLCKGVVFD-SNYYSGVCEEVNKYCRKRWNRWKAILRHTYFSNPWTIISLVAA 384
Peptidase_C97 pfam05903
PPPDE putative peptidase domain; The PPPDE superfamily (after Permuted Papain fold Peptidases ...
18-154 1.22e-61

PPPDE putative peptidase domain; The PPPDE superfamily (after Permuted Papain fold Peptidases of DsRNA viruses and Eukaryotes), consists of predicted thiol peptidases with a circularly permuted papain-like fold. The inference of the likely DUB function of the PPPDE superfamily proteins is based on the fusions of the catalytic domain to Ub-binding PUG (PUB)/UBA domains and a novel alpha-helical Ub-associated domain (the PUL domain, after PLAP, Ufd3p and Lub1p).


Pssm-ID: 461775  Cd Length: 151  Bit Score: 202.57  E-value: 1.22e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637     18 PVYLNVYDLTPMN------VYGYWLGI---GIYHSGLEVHGVEYGYGAHEKSSSGIFEVEPKK-CPGFTFRKSILVGETE 87
Cdd:pfam05903   2 PVYLNVYDLSPDNyglarrYYPTLLGKqidGIFHTGVEVYGVEYFFGGHEKGSGGIFELPPGTtCPGFTPRESIDIGTTE 81
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2827637     88 MKAKEVRSFMEKLSEEYQGNKYHLITRNCNHFCNHVSLKLTHKSIPSWVNRLARLGF---LCNCVLPACL 154
Cdd:pfam05903  82 VTEEEVRDYLEELSEEYTGDKYNLLSNNCNHFTDELCQFLTGKPIPSWINRLARIVLstpFGQCLLPMLL 151
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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