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Conserved domains on  [gi|1789575907|emb|CAA0410752|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

SANT/Myb-like DNA-binding domain-containing protein( domain architecture ID 999994)

SANT (SWI3, ADA2, N-CoR and TFIIIB)/Myb-like DNA-binding domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03091 super family cl33633
hypothetical protein; Provisional
 101-283 7.61e-28

hypothetical protein; Provisional


The actual alignment was detected with superfamily member PLN03091:

Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 114.69  E-value: 7.61e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907 101 KNLIKGQWTAEEDRKLIRLVRQHGERKWAMISeKLEG--RAGKQCRERWHNHLRPDIKKDGWSEEEERVLVESHMRIGNK 178
Cdd:PLN03091   10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVP-KQAGlqRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907 179 WAEIAKLIPGRTENSIKNHWNATKRRQNSKR-----KHKRESNADNNdRDASPSAKRPCILQDYIKSIERNNINKDN--D 251
Cdd:PLN03091   89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRgidpnTHKPLSEVENG-EDKNPPTDDKSDKASSVVSNELNLLKADNskP 167

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1789575907 252 EKKNENTISVISTPNLDQIYSDGDSASSILGG 283
Cdd:PLN03091  168 LAALQEKRSSSISPAGYQLEVESSSSSKINNS 199
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 101-283 7.61e-28

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 114.69  E-value: 7.61e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907 101 KNLIKGQWTAEEDRKLIRLVRQHGERKWAMISeKLEG--RAGKQCRERWHNHLRPDIKKDGWSEEEERVLVESHMRIGNK 178
Cdd:PLN03091   10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVP-KQAGlqRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907 179 WAEIAKLIPGRTENSIKNHWNATKRRQNSKR-----KHKRESNADNNdRDASPSAKRPCILQDYIKSIERNNINKDN--D 251
Cdd:PLN03091   89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRgidpnTHKPLSEVENG-EDKNPPTDDKSDKASSVVSNELNLLKADNskP 167

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1789575907 252 EKKNENTISVISTPNLDQIYSDGDSASSILGG 283
Cdd:PLN03091  168 LAALQEKRSSSISPAGYQLEVESSSSSKINNS 199
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 95-245 1.04e-19

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 91.39  E-value: 1.04e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907  95 TKKRSSKNLIKGQWTAEEDRKLIRLVRQHGERKWAMISEKLEGRAGKQCRERWHNHLRPDIKKDGWSEEEERVLVESHMR 174
Cdd:COG5147    10 QIKLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKE 89

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1789575907 175 IGNKWAEIAKLIPGRTENSIKNHWNATKRRQNSKR--KHKRESNADNNDRDASPSAKRPCILQDYIKSIERNN 245
Cdd:COG5147    90 LGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHdsKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNR 162
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 108-168 1.47e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 73.50  E-value: 1.47e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1789575907 108 WTAEEDRKLIRLVRQHGeRKWAMISEKLEGRAGKQCRERWHNHLRPDIKKDGWSEEEERVL 168
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 108-151 6.35e-15

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 68.37  E-value: 6.35e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1789575907 108 WTAEEDRKLIRLVRQHGERKWAMISEKLEGRAGKQCRERWHNHL 151
Cdd:cd00167     2 WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
105-153 8.02e-15

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 68.40  E-value: 8.02e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1789575907  105 KGQWTAEEDRKLIRLVRQHGERKWAMISEKLEGRAGKQCRERWHNHLRP 153
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
 
Name Accession Description Interval E-value
PLN03091 PLN03091
hypothetical protein; Provisional
 101-283 7.61e-28

hypothetical protein; Provisional


Pssm-ID: 215570 [Multi-domain]  Cd Length: 459  Bit Score: 114.69  E-value: 7.61e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907 101 KNLIKGQWTAEEDRKLIRLVRQHGERKWAMISeKLEG--RAGKQCRERWHNHLRPDIKKDGWSEEEERVLVESHMRIGNK 178
Cdd:PLN03091   10 QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVP-KQAGlqRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907 179 WAEIAKLIPGRTENSIKNHWNATKRRQNSKR-----KHKRESNADNNdRDASPSAKRPCILQDYIKSIERNNINKDN--D 251
Cdd:PLN03091   89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRgidpnTHKPLSEVENG-EDKNPPTDDKSDKASSVVSNELNLLKADNskP 167

                         170       180       190
                  ....*....|....*....|....*....|..
gi 1789575907 252 EKKNENTISVISTPNLDQIYSDGDSASSILGG 283
Cdd:PLN03091  168 LAALQEKRSSSISPAGYQLEVESSSSSKINNS 199
PLN03212 PLN03212
Transcription repressor MYB5; Provisional
 105-323 9.07e-26

Transcription repressor MYB5; Provisional


Pssm-ID: 178751 [Multi-domain]  Cd Length: 249  Bit Score: 105.16  E-value: 9.07e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907 105 KGQWTAEEDRKLIRLVRQHGERKWAMISEKLEG-RAGKQCRERWHNHLRPDIKKDGWSEEEERVLVESHMRIGNKWAEIA 183
Cdd:PLN03212   25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLlRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIA 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907 184 KLIPGRTENSIKNHWNATKR----RQNSKRKHKRESNADN---NDRDASPSAKRPCilqDYIKSIERNNINKDNDEKKNE 256
Cdd:PLN03212  105 GRIPGRTDNEIKNYWNTHLRkkllRQGIDPQTHKPLDANNihkPEEEVSGGQKYPI---EPISSSHTDDTTVNGGDGDSK 181

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1789575907 257 NTISVISTPN--LDQIYSDGDSASSILGGPYDEELDYFQNIFanhPISlENLGLSQTSDEVTQSSSSGF 323
Cdd:PLN03212  182 NSINVFGGEHgyEDFGFCYDDKFSSFLNSLINDDADPFGNII---PIS-QPLQMDDCKDEIVGASSSSL 246
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 95-245 1.04e-19

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 91.39  E-value: 1.04e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907  95 TKKRSSKNLIKGQWTAEEDRKLIRLVRQHGERKWAMISEKLEGRAGKQCRERWHNHLRPDIKKDGWSEEEERVLVESHMR 174
Cdd:COG5147    10 QIKLMQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKE 89

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1789575907 175 IGNKWAEIAKLIPGRTENSIKNHWNATKRRQNSKR--KHKRESNADNNDRDASPSAKRPCILQDYIKSIERNN 245
Cdd:COG5147    90 LGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHdsKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNR 162
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 108-168 1.47e-16

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 73.50  E-value: 1.47e-16
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1789575907 108 WTAEEDRKLIRLVRQHGeRKWAMISEKLEGRAGKQCRERWHNHLRPDIKKDGWSEEEERVL 168
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGRRTPKQCFDRWRRKLNPKISRGPWSKEEDQRL 60
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 108-151 6.35e-15

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 68.37  E-value: 6.35e-15
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1789575907 108 WTAEEDRKLIRLVRQHGERKWAMISEKLEGRAGKQCRERWHNHL 151
Cdd:cd00167     2 WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
105-153 8.02e-15

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 68.40  E-value: 8.02e-15
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1789575907  105 KGQWTAEEDRKLIRLVRQHGERKWAMISEKLEGRAGKQCRERWHNHLRP 153
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 105-151 2.57e-14

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 66.76  E-value: 2.57e-14
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1789575907 105 KGQWTAEEDRKLIRLVRQHGERkWAMISEKLEGRAGKQCRERWHNHL 151
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNR-WKKIAKLLPGRTDNQCKNRWQNYL 46
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 157-199 1.85e-12

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 61.37  E-value: 1.85e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1789575907 157 KDGWSEEEERVLVESHMRIGNKWAEIAKLIPGRTENSIKNHWN 199
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGNRWKKIAKLLPGRTDNQCKNRWQ 43
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 160-202 5.32e-10

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 54.50  E-value: 5.32e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 1789575907 160 WSEEEERVLVESHMRIG-NKWAEIAKLIPGRTENSIKNHWNATK 202
Cdd:cd00167     2 WTEEEDELLLEAVKKYGkNNWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
157-204 1.23e-09

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 53.38  E-value: 1.23e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 1789575907  157 KDGWSEEEERVLVESHMRIG-NKWAEIAKLIPGRTENSIKNHWNATKRR 204
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGkNNWEKIAKELPGRTAEQCRERWRNLLKP 49
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 91-256 1.79e-06

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 50.17  E-value: 1.79e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907  91 YQNSTKKRSS--------KNLIKGQWTAEEDRKLIRLVRQHGERkWAMISEKLEGRAGKQCRERWHNHLRPDIKKDgWSE 162
Cdd:COG5147    50 LISSTGKQSSnrwnnhlnPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADYKDRRTAQQCVERYVNTLEDLSSTH-DSK 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907 163 EEERVLVESHMRIGNKWAEIAKLIPGRTENSIKNHWNATKRR--QNSKRKHKRESNADNNDRDASPSAKRPCILQDYI-- 238
Cdd:COG5147   128 LQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLRvpRVSKADVKPREKGEENNPDIEDLQEMKELKSASItr 207

                         170
                  ....*....|....*...
gi 1789575907 239 KSIERNNINKDNDEKKNE 256
Cdd:COG5147   208 HLILPSKSEINKAFKKGE 225
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 160-199 2.31e-06

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 44.61  E-value: 2.31e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1789575907 160 WSEEEERVLVESHMRIGNKWAEIAKLIPGRTENSIKNHWN 199
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYGNDWKQIAKELGRRTPKQCFDRWR 40
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 108-149 5.70e-05

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 40.24  E-value: 5.70e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 1789575907 108 WTAEEDRKLIRLVRQHGERKWAMISEK---LEGRAGKQCRERWHN 149
Cdd:cd11660     3 WTDEEDEALVEGVEKYGVGNWAKILKDyffVNNRTSVDLKDKWRN 47
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 153-190 4.74e-04

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 38.06  E-value: 4.74e-04
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1789575907 153 PDIKKDGWSEEEERVLVESHMRIGNKWAEIAKLIpGRT 190
Cdd:cd11659     1 PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAPIV-GRT 37
SANT_CDC5_II cd11659
SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, ...
 105-147 1.46e-03

SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II; In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212557 [Multi-domain]  Cd Length: 53  Bit Score: 36.52  E-value: 1.46e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|...
gi 1789575907 105 KGQWTAEEDRKLIRLVRqHGERKWAMISeKLEGRAGKQCRERW 147
Cdd:cd11659     5 KTEWTREEDEKLLHLAK-LLPTQWRTIA-PIVGRTAQQCLERY 45
REB1 COG5147
Myb superfamily proteins, including transcription factors and mRNA splicing factors ...
 104-190 1.76e-03

Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning];


Pssm-ID: 227476 [Multi-domain]  Cd Length: 512  Bit Score: 40.54  E-value: 1.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789575907 104 IKGQWTAEEDRKLIRLVRQHGERkWAMISeKLEGRAGKQCRERWHNHLRP--DIKKDGWSEEEERVL--VESHMRIGN-- 177
Cdd:COG5147   290 QRGKWTKEEEQELAKLVVEHGGS-WTEIG-KLLGRMPNDCRDRWRDYVKCgdTLKRNRWSIEEEELLdkVVNEMRLEAqq 367

                          90
                  ....*....|....*..
gi 1789575907 178 ----KWAEIAKLIPGRT 190
Cdd:COG5147   368 ssriLWLLIAQNIRNRL 384
GT1 cd12203
GT1, myb-like, SANT family; GT-1, a myb-like protein, is one of the GT trihelix transcription ...
 107-157 7.32e-03

GT1, myb-like, SANT family; GT-1, a myb-like protein, is one of the GT trihelix transcription factors. GT-1 binds the GT cis-element of rbcS-3A, a light-induced gene, as a dimer. Arabidopsis GT-1 is a trans-activator and acts in the stabilization of components of the transcription pre-initiation complex comprised of TFIIA-TBP-TATA. The isolated GT-1 DNA-binding domain is sufficient to bind DNA. This region closely resembles the myb domain, but with longer helices. It has been proposed that GT-1 may respond to light signals via calcium-dependent phosphorylation to create a light-modulated molecular switch. These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 213402  Cd Length: 66  Bit Score: 34.95  E-value: 7.32e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1789575907 107 QWTAEEDRKLIRLVR------QHGERK---WAMISEKL--EG--RAGKQCRERWhNHLRPDIKK 157
Cdd:cd12203     2 RWPREETLSLIRLRRemesrfQETKSKkalWEEIAAKMreLGynRSAKQCKEKW-ENLNKYYKK 64
Myb_DNA-bind_4 pfam13837
Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb ...
 107-149 9.85e-03

Myb/SANT-like DNA-binding domain; This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins.


Pssm-ID: 463994  Cd Length: 84  Bit Score: 34.93  E-value: 9.85e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1789575907 107 QWTAEEDRKLIRLVRQHGERK-----------WAMISEKLEG----RAGKQCRERWHN 149
Cdd:pfam13837   3 KWTEEETLALIEIWGERLELRfqeskkrnkklWEEIAEKMAElgynRSPEQCKEKWEN 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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