NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1789585086|emb|CAA0385351|]
View 

unnamed protein product [Arabidopsis thaliana]

Protein Classification

PSK domain-containing protein( domain architecture ID 10533975)

PSK domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PSK pfam06404
Phytosulfokine precursor protein (PSK); This family consists of several plant specific ...
 12-79 1.43e-15

Phytosulfokine precursor protein (PSK); This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis.


:

Pssm-ID: 399419  Cd Length: 89  Bit Score: 64.76  E-value: 1.43e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789585086 12 LLLCSTLTYAARLTPT---------------TTTALSRENSVKEIEG--DKVEEESCNGIGE-EECLIRRSLVL-HTDYI 72
Cdd:pfam06404  3 LLLLSSSSAAARPLPPhqgenevklneinegATAEGEEGEDFSELMGleEAEAAEACEEGDDdEECLMRRTLVEaHLDYI 82


                 ....*..
gi 1789585086 73 YTQNHKP 79
Cdd:pfam06404 83 YTQHHNH 89
 
Name Accession Description Interval E-value
PSK pfam06404
Phytosulfokine precursor protein (PSK); This family consists of several plant specific ...
 12-79 1.43e-15

Phytosulfokine precursor protein (PSK); This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis.


Pssm-ID: 399419  Cd Length: 89  Bit Score: 64.76  E-value: 1.43e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789585086 12 LLLCSTLTYAARLTPT---------------TTTALSRENSVKEIEG--DKVEEESCNGIGE-EECLIRRSLVL-HTDYI 72
Cdd:pfam06404  3 LLLLSSSSAAARPLPPhqgenevklneinegATAEGEEGEDFSELMGleEAEAAEACEEGDDdEECLMRRTLVEaHLDYI 82


                 ....*..
gi 1789585086 73 YTQNHKP 79
Cdd:pfam06404 83 YTQHHNH 89
 
Name Accession Description Interval E-value
PSK pfam06404
Phytosulfokine precursor protein (PSK); This family consists of several plant specific ...
 12-79 1.43e-15

Phytosulfokine precursor protein (PSK); This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis.


Pssm-ID: 399419  Cd Length: 89  Bit Score: 64.76  E-value: 1.43e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789585086 12 LLLCSTLTYAARLTPT---------------TTTALSRENSVKEIEG--DKVEEESCNGIGE-EECLIRRSLVL-HTDYI 72
Cdd:pfam06404  3 LLLLSSSSAAARPLPPhqgenevklneinegATAEGEEGEDFSELMGleEAEAAEACEEGDDdEECLMRRTLVEaHLDYI 82


                 ....*..
gi 1789585086 73 YTQNHKP 79
Cdd:pfam06404 83 YTQHHNH 89
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH