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Conserved domains on  [gi|1789581770|emb|CAA0381672|]
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unnamed protein product [Arabidopsis thaliana]

Protein Classification

2Fe-2S iron-sulfur cluster-binding family protein( domain architecture ID 1376)

2Fe-2S iron-sulfur cluster-binding family protein such as ferredoxin, an iron-sulfur protein transfering electrons in a wide variety of metabolic reactions

Gene Ontology:  GO:0051536

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
fer2 super family cl00159
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
46-153 1.22e-12

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


The actual alignment was detected with superfamily member PLN02593:

Pssm-ID: 444718 [Multi-domain]  Cd Length: 117  Bit Score: 60.89  E-value: 1.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581770  46 VKLSAIDPDGYKQDIIGLSGQTLLRAlthtglidpaSHRlDDIE---------ACSAeCEVQIAEEWL-EKLPPRTYDEE 115
Cdd:PLN02593    1 ISVTFVDKDGEERTVKAPVGMSLLEA----------AHE-NDIElegacegslACST-CHVIVMDEKVyNKLPEPTDEEN 68
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1789581770 116 YVLKRSSRsriLNKHSRLGCQVVLTQELQGMVVAVPEA 153
Cdd:PLN02593   69 DMLDLAFG---LTETSRLGCQVIAKPELDGMRLALPAA 103
 
Name Accession Description Interval E-value
PLN02593 PLN02593
adrenodoxin-like ferredoxin protein
46-153 1.22e-12

adrenodoxin-like ferredoxin protein


Pssm-ID: 178203 [Multi-domain]  Cd Length: 117  Bit Score: 60.89  E-value: 1.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581770  46 VKLSAIDPDGYKQDIIGLSGQTLLRAlthtglidpaSHRlDDIE---------ACSAeCEVQIAEEWL-EKLPPRTYDEE 115
Cdd:PLN02593    1 ISVTFVDKDGEERTVKAPVGMSLLEA----------AHE-NDIElegacegslACST-CHVIVMDEKVyNKLPEPTDEEN 68
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1789581770 116 YVLKRSSRsriLNKHSRLGCQVVLTQELQGMVVAVPEA 153
Cdd:PLN02593   69 DMLDLAFG---LTETSRLGCQVIAKPELDGMRLALPAA 103
 
Name Accession Description Interval E-value
PLN02593 PLN02593
adrenodoxin-like ferredoxin protein
46-153 1.22e-12

adrenodoxin-like ferredoxin protein


Pssm-ID: 178203 [Multi-domain]  Cd Length: 117  Bit Score: 60.89  E-value: 1.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581770  46 VKLSAIDPDGYKQDIIGLSGQTLLRAlthtglidpaSHRlDDIE---------ACSAeCEVQIAEEWL-EKLPPRTYDEE 115
Cdd:PLN02593    1 ISVTFVDKDGEERTVKAPVGMSLLEA----------AHE-NDIElegacegslACST-CHVIVMDEKVyNKLPEPTDEEN 68
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1789581770 116 YVLKRSSRsriLNKHSRLGCQVVLTQELQGMVVAVPEA 153
Cdd:PLN02593   69 DMLDLAFG---LTETSRLGCQVIAKPELDGMRLALPAA 103
PTZ00490 PTZ00490
Ferredoxin superfamily; Provisional
46-151 2.61e-04

Ferredoxin superfamily; Provisional


Pssm-ID: 185668  Cd Length: 143  Bit Score: 39.08  E-value: 2.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1789581770  46 VKLSAIDPDGYKQDIIGLSGQTLLRALThtgliDPASHRLD---DIEACSAECEVQIAEEWLEKLPPRTYDEEYVLkrsS 122
Cdd:PTZ00490   36 VKVCVKKRDGTHCDVEVPVGMSLMHALR-----DVAKLDVEgtcNGCMQCATCHVYLSAASFKKLGGPSEEEEDVL---A 107
                          90       100
                  ....*....|....*....|....*....
gi 1789581770 123 RSRILNKHSRLGCQVVLTQELQGMVVAVP 151
Cdd:PTZ00490  108 KALDVKETSRLACQVDLTPEMDGLEVELP 136
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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