unnamed protein product [Arabidopsis thaliana]
Protein Classification
v-SNARE C-terminal domain-containing protein( domain architecture ID 10574706)
v-SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) C-terminal domain-containing protein similar to Saccharomyces cerevisiae Golgi SNAP receptor complex member 1 involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| V-SNARE_C | pfam12352 | Snare region anchored in the vesicle membrane C-terminus; Within the SNARE proteins ... |
150-214 | 2.25e-14 | ||
Snare region anchored in the vesicle membrane C-terminus; Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. : Pssm-ID: 289148 Cd Length: 66 Bit Score: 65.71 E-value: 2.25e-14
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| Name | Accession | Description | Interval | E-value | ||
| V-SNARE_C | pfam12352 | Snare region anchored in the vesicle membrane C-terminus; Within the SNARE proteins ... |
150-214 | 2.25e-14 | ||
Snare region anchored in the vesicle membrane C-terminus; Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Pssm-ID: 289148 Cd Length: 66 Bit Score: 65.71 E-value: 2.25e-14
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| SNARE_GS28 | cd15864 | SNARE motif of GS28; GS28 (also known as golgi SNAP receptor complex member 1 or GOSR1) forms ... |
152-210 | 2.58e-07 | ||
SNARE motif of GS28; GS28 (also known as golgi SNAP receptor complex member 1 or GOSR1) forms complexes with syntaxin-5 (Qa), Ykt6 (R-SNARE) and either Bet1 (Qc) or GS15 (Qc). These complexes regulate the early secretory pathway of eukaryotic cells at the level of the transport from the ER-Golgi intermediate compartment (ERGIC) to the cis-Golgi and transport from the trans-Golgi network to the cis-Golgi, respectively. GS28 is a member of the Qb subfamily of SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins which contain coiled-coil helices (called SNARE motifs) that mediate the interactions between SNARE proteins, and a transmembrane domain. The SNARE complex mediates membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qa-, as well as Qb- and Qc-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle. Their SNARE motifs form twisted and parallel heterotetrameric helix bundles. Pssm-ID: 277217 Cd Length: 66 Bit Score: 46.66 E-value: 2.58e-07
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| Name | Accession | Description | Interval | E-value | ||
| V-SNARE_C | pfam12352 | Snare region anchored in the vesicle membrane C-terminus; Within the SNARE proteins ... |
150-214 | 2.25e-14 | ||
Snare region anchored in the vesicle membrane C-terminus; Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion; whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008. Pssm-ID: 289148 Cd Length: 66 Bit Score: 65.71 E-value: 2.25e-14
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| SNARE_GS28 | cd15864 | SNARE motif of GS28; GS28 (also known as golgi SNAP receptor complex member 1 or GOSR1) forms ... |
152-210 | 2.58e-07 | ||
SNARE motif of GS28; GS28 (also known as golgi SNAP receptor complex member 1 or GOSR1) forms complexes with syntaxin-5 (Qa), Ykt6 (R-SNARE) and either Bet1 (Qc) or GS15 (Qc). These complexes regulate the early secretory pathway of eukaryotic cells at the level of the transport from the ER-Golgi intermediate compartment (ERGIC) to the cis-Golgi and transport from the trans-Golgi network to the cis-Golgi, respectively. GS28 is a member of the Qb subfamily of SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins which contain coiled-coil helices (called SNARE motifs) that mediate the interactions between SNARE proteins, and a transmembrane domain. The SNARE complex mediates membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qa-, as well as Qb- and Qc-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle. Their SNARE motifs form twisted and parallel heterotetrameric helix bundles. Pssm-ID: 277217 Cd Length: 66 Bit Score: 46.66 E-value: 2.58e-07
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