|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13709 |
PRK13709 |
conjugal transfer nickase/helicase TraI; Provisional |
2-1751 |
0e+00 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237478 [Multi-domain] Cd Length: 1747 Bit Score: 3096.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 2 MSIAQVRSAGSAGNYYTDKDNYYVLGSMGERWAGKGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNKHRPGYD 81
Cdd:PRK13709 1 MSIAQVKSAGSAGNYYTDKDNYYVLGSMGERWAGEGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNKHRPGYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 82 LTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAV 161
Cdd:PRK13709 81 LTFSAPKSVSMMAMLGGDKRLIEAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQDPQLHTHAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 162 VANVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVPVEAFSGRSQAI 241
Cdd:PRK13709 161 VANVTQHNGKWKTLSSDKVGKTGFIENVYANQIAFGKIYREALKEDVEALGYETEVVGKHGMWEMKGVPVEAFSSRSQEI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 242 REAVGEDASLKSRDVAALDTRKSKQHVDPEIRMAEWMQTLKETGFDIRAYRDAADQRTEIRTQAPGPASQDGPDVQQAVT 321
Cdd:PRK13709 241 REAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYREAADQRAEIRTQAPGPASQDGPDIQQAVT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 322 QAIAGLSERKVQFTYTDVLARTVGILPPENGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMK 401
Cdd:PRK13709 321 QAIAGLSDRKVQFTYTDLLARTVGILPPENGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 402 QNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNLKQDER 481
Cdd:PRK13709 401 QNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQILAADRRSQMNLKQDER 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 482 LSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGSALMAMKDAGVNTYRWQ 561
Cdd:PRK13709 481 LSGELITGRRQLQEGMAFTPGSTLIVDQAEKLSLKETLTLLDGAARHNVQVLILDSGQRTGTGSALMVLKDAGVNTYRWQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 562 GGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHPEVTMTALSPVWLDS 641
Cdd:PRK13709 561 GGEQRPATVISEPDKNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTGLIRSALKTQGVLGRPEVTITALSPVWLDS 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 642 RSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDSSWSLFRPEKMPVADGERLRVT 721
Cdd:PRK13709 641 KSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVKISSLDSSWSLFRPEKMPVADGERLRVL 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 722 GKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPASLPVSDSPFTALKLENGWVETPGHSVSDSATVFASVTQMAMDNAT 801
Cdd:PRK13709 721 GKIPGLRLKGGDRLQVTSVSEDGLTVVVPGRAEPATLPVDDSPFTALKLEHGWVETPGHSVSDSATVFASVTQRAMDNAT 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 802 LNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLETAISLQKAGLHTPAQQAIHLALPVLESKNLA 881
Cdd:PRK13709 801 LNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETDLETAISLQKAGLHTPAQQAIHLALPVLESKNLA 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 882 FSMVDLLTEAKSFAAEGTGFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERV 961
Cdd:PRK13709 881 FSMVDLLTEAKSFAAEGTSFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERV 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 962 PGELMETLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPASERPRVVGLGPTHRAVGEMRSAGVDAQ 1041
Cdd:PRK13709 961 PGELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDAQ 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1042 TQASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAA 1121
Cdd:PRK13709 1041 TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAPGQPFRLMQTRSAA 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1122 DVAIMKEIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRLEGAWAPEHSVTEFSHSQEAKLAEAQQKAMQngeAF 1201
Cdd:PRK13709 1121 DVAIMKEIVRQTPELREAVYSLINRDVERALSGIESVKPSQVPRQEGAWAPESSVTEFSHPQEAKLAEAQQKAML---AF 1197
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1202 PDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWE 1281
Cdd:PRK13709 1198 PDVPMTLYEAIVRDYTGRTPEAREQTLIITHLNEDRRVLNSMIHDAREKAGELGKEQVTVPVLDTANIRDGELRRLSTWE 1277
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1282 THRDALALVDNVYHRIAGISKDDGLITLEDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSV 1361
Cdd:PRK13709 1278 AHRGALALVDNVYHRIAGIDKDDGLITLRDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSV 1357
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1362 WTVTAVSGDSVTLSDGQQTRVIRPGQEQAEQHIDLAYAITAHGAQGASETFAIALEGTEGNRKLMAGFESAYVALSRMKQ 1441
Cdd:PRK13709 1358 WTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETYAIALEGTEGGRKQMAGFESAYVALSRMKQ 1437
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1442 HVQVYTDNRQGWTDAINNAVQKGTAHDVLEPKPDREVMNAERLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAPGRK 1521
Cdd:PRK13709 1438 HVQVYTDNRQGWTDAINNAVQKGTAHDVLEPKPDREVMNAERLFSTARELRDTAAGRAVLRQAGLAGGDSPARFIAPGRK 1517
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1522 YPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGESLLADNMQDGVRIARDNPDS 1601
Cdd:PRK13709 1518 YPQPHVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSEDAQFVALQGSRNGESLLADNMQDGVRIARDNPDS 1597
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1602 GVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1681
Cdd:PRK13709 1598 GVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1677
|
1690 1700 1710 1720 1730 1740 1750
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1682 GKTELAVRDIAGQERDRSAISERETALPESVLRESQREREAVREVARENLLQERLQQMERDMVRDLQKEK 1751
Cdd:PRK13709 1678 GKTEQAVRDIAGQERDRAAISEREAALPESVLREPQREREAVREVARENLLRERLQQMERDMVRDLQKEK 1747
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
1-1756 |
0e+00 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 1986.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1 MMSIAQVRSAGSAGNYYTDKDNYYVLGSM---GERWAGKGAEQLGLQG-SVDKDVFTRLLEGRLPDGADLSRMQDGSNKH 76
Cdd:TIGR02760 1 MMSISPLRSAGDAAAYYLDEDNYYLKDSKslnNTRWLGKGAEQLGLLGkPVEKEQFEALLSGTLPDGTQLGRIDKGGIHH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 77 RPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQ 155
Cdd:TIGR02760 81 RPGFDLTFSAPKSVSILALVGGDKRLIEAHDKAVKIAVSEMEKdAAQARQTVDGKTEFINTRNLVFAMFRHKTSRENDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 156 LHTHAVVANVTQ-HNGEWKTLSSDKVGKTGFI----ENVYANQIAFGRLYREKLKEQVEALGYETEVVGKhGMWEMPGVP 230
Cdd:TIGR02760 161 LHTHAVVQNMTHdSDGKWRSLASDMKGQKGVIegfrERIYNHQIYYGLLYRSKLAKKVEELGYQTASVGK-GQFEIQGVP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 231 ---VEAFSGRSQAIREAVGEDA--SLKSRDVAALDTRKSKQHVDPEIRMAEWMQTLKETGFDIRAYRDAADQRTEIRTQA 305
Cdd:TIGR02760 240 eqvLTAFSKRRQQIDELVDEKGwsSAKARDIAALDTRKDKTYIDDETLMEKWQQECKDMGFDPHALVASSYKPENIVARF 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 306 PGPASQDgpdVQQAVTQAIAGLSERKVQFTYTDVLARTVGILPPENGVIER--ARAGIDEAISREQLIPLDREKGLFTSG 383
Cdd:TIGR02760 320 YGPSQID---AQHAVEVAIAHLSQYSTQFEYEKLIEEAAKYFTAGNKIIDEidIKKAIDELIANGQLIPLFTQKGLFTTQ 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 384 IHVLDELSVRALSRDIMKQNRVTVHPEKSV--PRTAGYSDAVSVLAQDRPSLAIVSGQGGAaGQRERVAELVMMAREQGR 461
Cdd:TIGR02760 397 TMLTNEKELIARTEGGKGALRVIVSKQKLSefALSPSNKDAVSTLFTSTKRFIIINGFGGT-GSTEIAQLLLHLASEQGY 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 462 EVQIIAADRRSQMNLKQD-ERLSGELITGRRQLLEGM-------------AFTPGSTVIVDQGEKLSLKETLTLLDGAAR 527
Cdd:TIGR02760 476 EIQIITAGSLSAQELRQKiPRLASTFITWVKNLFNDDqdhtvqglldkssPFSNKDIFVVDEANKLSNNELLKLIDKAEQ 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 528 HNVQ-VLITDSGQRTG--TGSALMAMKDAGVNTYRWQGGEQRPATI-ISEPDRNVRYARLAGDFAASVKAGEESVAQVSG 603
Cdd:TIGR02760 556 HNSKlILLNDSAQRQGmsAGSAIDLLKEGGVTTYAWVDTKQQKASVeISEAVDKLRVDYIASAWLDLTPDRQNSQVLATT 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 604 VREQAILTQAIRSELKTQGVLGHPEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTL 683
Cdd:TIGR02760 636 HREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNAAHYKQGMVIRFWQKGKIPHDDYVVTNVNKHNNTLTL 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 684 RDAQGETQVVRISSL---DSSWSLFRPEKMPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVV-VPGRaepaSLP 759
Cdd:TIGR02760 716 KDAQGKTQKFKPSSLkdlERPFSVYRPEQLEVAAGERLQVTGNHFHSRVRNGELLTVSSINNEGITLItEDGQ----TLH 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 760 VSDSPFTALKLENGWVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLYSSLDET--RTAEKLARHPSFTVVS 837
Cdd:TIGR02760 792 LPHGALEDAHLDYGYVLTPYHTQPDDAKVFLGVKQYALSKALLNSLNRSASRVDLFTDLDEKaqRYLEKTRGIPSAIVVV 871
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 838 EQIKARAGETL-------LETAISLQKAGLHTPAQQ-----AIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFTELG 905
Cdd:TIGR02760 872 DQKQHLPDAVTtnntdksLEMDISDTLHALEAKAKDgknsiALQYALEKVSEKEAAFKQKELVTEAYVFAFEETGFAIKA 951
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 906 GEINAQIKRGDLLYVDVAKGYGTG-LLVSRASYEAEKSILRHILEGKEAVTPLMERVPG----ELMETLTSGQRAATRMI 980
Cdd:TIGR02760 952 AEIAAALKNRPKLYRLLSAEYGDGtRWTTRAALRTETSILLHILPGKETVTPLATRAQVflnlELLERLTHGQKQAIHLI 1031
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 981 LETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPASERPRVVGLGPTHRAVGEMRSAGVDAQTQASFLHDTQLQQRSGEtp 1060
Cdd:TIGR02760 1032 ISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKSAGVQAQTLDSFLTDISLYRNSGG-- 1109
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1061 DFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQ--TPELRE 1138
Cdd:TIGR02760 1110 DFRNTLFILDESSMVSNFQLTHATELVQKSGSRAVSLGDIAQLQSLAAGKPFELAITFDIIDTAIMKEIVRQnnSAELKA 1189
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1139 AVYSLINRDVERALSGLESVKPSQVPRLEGAWAPEHSVTEFSHsQEAKLAEAQQKAMQNGEAFPDVPMTLYEAIVRDYTG 1218
Cdd:TIGR02760 1190 AHNSLDKRSNPKALELLKNQNPLQHELMQNAAMPEIASDEQGL-QKHDLAKLAVNTEKPKKAQPDATVTLYREIVKDYLS 1268
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1219 RTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWEThRDALALVDNVYHRIA 1298
Cdd:TIGR02760 1269 RTPEFRENTLIIAHTNNDRTGIYPFIREGLIKQKELSKQQVTVPRLRSVNISSPELKTMMPFEK-GAVLRLKKDAYLTIA 1347
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1299 GISKDDGLITLEDAE-GNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSVWTVTAV-SGDSVTLSD 1376
Cdd:TIGR02760 1348 DIDREHGKLTVADIKtGSERDILPRQLDHTFTSLYSDSELPLAKGDKIRLRATDKNRGIKANEVYTVTQVvNGLSVQLSK 1427
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1377 GQQTRVIRPGQeQAEQHIDLAYAITAHGAQGASETFAIALegtEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGWT-- 1454
Cdd:TIGR02760 1428 VKNSLSLKPIQ-AKDKHWDYAYTRTADSAQGATYTFVIAL---IKGRLALTNYRSAYIDLTRASHHVELYTDNKEGTVks 1503
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1455 ---------------------------------------------------DAINNAV---------------------- 1461
Cdd:TIGR02760 1504 wkqreanktsaveteedyrpkqstqfnnraqpheepkyqqkngplkiqsaaEIINEALpayteslaktllgepntqksrr 1583
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1462 -----------------------------QKGTAHDVLEPKPD---REVMN----------------------------- 1480
Cdd:TIGR02760 1584 drytfgakgglkvsltgkyrglwhdfstgEKGTLIQLIEAKKGlsfKEALNqaasllgipqhyqlsinikapqlsntepq 1663
|
1690 1700 1710 1720 1730 1740 1750 1760
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1481 --------AERLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAP-----GRKYPQPYVALPAFDRNGKSAGIWLNPLT 1547
Cdd:TIGR02760 1664 klnqlekrAKSLFQGSQELKGTLAEKYLKQHRGLASIDNDDIRFHPtvyssDKKNKHPALIAAARNEKGEITGIQITYLD 1743
|
1770 1780 1790 1800 1810 1820 1830 1840
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1548 TDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGE-SLLADNMQDGVRIARDNPDSGVVVRIAGegrpwnpgaitggrvwg 1626
Cdd:TIGR02760 1744 KDDANKDKDMDNNKRVKGSISGQFVVINKGMQGDrSYIAEGIETGLSIALANPKATVVIAVGG----------------- 1806
|
1850 1860 1870 1880 1890 1900 1910 1920
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1627 dipDNSVQPGAGNGEPVTAEVLAQRQAEEAIrreTERRADEIVRKMAENK-----------PDLPDGKTELAVRDIAGQE 1695
Cdd:TIGR02760 1807 ---KNNLSPIIPKFIPKNVVIVLDNDGEEAK---SQRAIEKIINKFKQDNisarivfpddwNDIGEEELQKQLMRAISSI 1880
|
1930 1940 1950 1960 1970 1980
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1003482777 1696 RDRSAISERETALPESVLRESQREREAVREVARENLLQERLQQM-------ERDMVRDLQKEKTLGGD 1756
Cdd:TIGR02760 1881 EDKDIEIPKAIADFESVLKMPNSDIISIIDNARTEREKSDLEQIvanehksQQALERDLNKEFTPDKR 1948
|
|
| MobF |
NF041492 |
MobF family relaxase; |
1-281 |
5.45e-112 |
|
MobF family relaxase;
Pssm-ID: 469380 [Multi-domain] Cd Length: 288 Bit Score: 357.00 E-value: 5.45e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1 MMSIAQVRSAGSAGNYYTDKD--NYYVLG--SMGERWAGKGAEQLGL-QGSVDKDVFTRLLEGRLPDGADLSRMQDGSNK 75
Cdd:NF041492 1 MLSIARIGSAGGAARYYTEKDldNYYSEDggTPAGRWFGKGAEALGLsGGAVDGERFKALLDGRLPDGERLRRRRKGAGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 76 HRPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVR-QVEALASTRVMTDGQSETVL--TGNLVMALFNHDTSRDQ 152
Cdd:NF041492 81 HRPGYDLTFSAPKSVSLLALVGGDKRLIEAHDEAVKEALEyLEERLAQTRVTVDGKGRTSLekTGNLVAALFRHDTSRAG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 153 EPQLHTHAVVANVTQH-NGEWKTLSSdkvgktgfiENVYANQIAFGRLYREKLKEQVEALGYETEVVgKHGMWEMPGVP- 230
Cdd:NF041492 161 DPQLHTHAVVMNMTQRpDGKWRSLDN---------EELYKNQKALGAIYQAELAEELQALGYEIRET-KNGQFEIAGVPr 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1003482777 231 --VEAFSGRSQAIREAVGED----ASLKSRDVAALDTRKSKQ-HVDPEIRMAEWMQTL 281
Cdd:NF041492 231 eqIEAFSKRSQQIEEWLGENpatlASAALRQIAALDTRKAKEaDVDPEELEAEWREEA 288
|
|
| TrwC |
pfam08751 |
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative ... |
10-283 |
2.11e-97 |
|
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.
Pssm-ID: 430190 [Multi-domain] Cd Length: 279 Bit Score: 315.32 E-value: 2.11e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 10 AGSAGNYYTDKDNYYVL-GSMGERWAGKGAEQLGLQGSVDKDVFTRLLEGRLPD-GADLSRMQDGSNKHRPGYDLTFSAP 87
Cdd:pfam08751 1 AGDAYAYYTRQDDYYTEgGEPPGRWLGKGAAALGLSGEVTEEQFEALLEGRHPDtGERLGRRRPRGRKHRAGFDLTFSAP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 88 KSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVT 166
Cdd:pfam08751 81 KSVSLLAAVGGDERIEAAHRAAVAEALAWLEKhAAQTRVGKDGGVEQVDTGGLVAAAFRHDTSRAGDPQLHTHVVVANVT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 167 Q-HNGEWKTLSSDKvgktgfienVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVP---VEAFSGRSQAIR 242
Cdd:pfam08751 161 QrEDGKWRALDSRG---------LYKAQVAAGAVYRAELADELRRLGYEIEERGKRGVFEIAGVPeelIEAFSKRRAQIE 231
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1003482777 243 EAVGE------DASLKSRDVAALDTRKSK-QHVDPEIRMAEWMQTLKE 283
Cdd:pfam08751 232 AELAElgathgRAPPAARQIAALETRPAKhEPRSLAELRARWREEAAE 279
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
937-1468 |
6.50e-49 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 183.25 E-value: 6.50e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 937 YEAEKSILRHILEGK------EAVTPLMERVPGELMETLTSGQRAATRMILETSdRFTVVQGYAGVGKTTqfraVMSAVN 1010
Cdd:COG0507 87 LEAEQRLARRLRRLArpaldeADVEAALAALEPRAGITLSDEQREAVALALTTR-RVSVLTGGAGTGKTT----TLRALL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1011 MLPASERPRVVGLGPTHRAVGEMR-SAGVDAQTQASFLH---DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYAL 1086
Cdd:COG0507 162 AALEALGLRVALAAPTGKAAKRLSeSTGIEARTIHRLLGlrpDSGRFRHNRDNPLTPADLLVVDEASMVDTRLMAALLEA 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1087 IAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELREAVYS-LINR-DVERALSglesvkpsqvp 1164
Cdd:COG0507 242 LPRAGARLILVGDPDQLPSVGAGAVLRDLIESGTVPVVELTEVYRQADDSRIIELAhAIREgDAPEALN----------- 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1165 rlegAWAPEHSVTEFSHSQEAKlaeaqqkamqngeafpdvpmtlyEAIVRDYTGRtPEAREQTLIVTHLNEDRRVLNSMI 1244
Cdd:COG0507 311 ----ARYADVVFVEAEDAEEAA-----------------------EAIVELYADR-PAGGEDIQVLAPTNAGVDALNQAI 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1245 HDAREKAGELGKEQvmvpvlntanIRDGELRrlstwethrdalalvdnvyhriagiskddglitledaegntrlisprea 1324
Cdd:COG0507 363 REALNPAGELEREL----------AEDGELE------------------------------------------------- 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1325 vaegvtlytpdtIRVgtGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLS---DGQQTRVIRPGQeqaEQHIDLAYAIT 1401
Cdd:COG0507 384 ------------LYV--GDRVMFTRNDYDLGVFNGDIGTVLSIDEDEGRLTvrfDGREIVTYDPSE---LDQLELAYAIT 446
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1003482777 1402 AHGAQGAseTF--AIALEGTEGNRklMAGFESAYVALSRMKQHVQVYTDNRQgWTDAINNAVQKGTAHD 1468
Cdd:COG0507 447 VHKSQGS--TFdrVILVLPSEHSP--LLSRELLYTALTRARELLTLVGDRDA-LARAVRRDTARATGLA 510
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
972-1130 |
6.91e-38 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 139.61 E-value: 6.91e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 972 GQRAATRMILetSDRFTVVQGYAGVGKTTQFRAVMSAVNMlpasERPRVVGLGPTHRAVGEMR-SAGVDAQTQASFLHDT 1050
Cdd:cd17933 1 EQKAAVRLVL--RNRVSVLTGGAGTGKTTTLKALLAALEA----EGKRVVLAAPTGKAAKRLSeSTGIEASTIHRLLGIN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1051 QLQQRS--GETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGgRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKE 1128
Cdd:cd17933 75 PGGGGFyyNEENPLDADLLIVDEASMVDTRLMAALLSAIPAGA-RLILVGDPDQLPSVGAGNVLRDLIASKGVPTVELTE 153
|
..
gi 1003482777 1129 IV 1130
Cdd:cd17933 154 VF 155
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13709 |
PRK13709 |
conjugal transfer nickase/helicase TraI; Provisional |
2-1751 |
0e+00 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237478 [Multi-domain] Cd Length: 1747 Bit Score: 3096.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 2 MSIAQVRSAGSAGNYYTDKDNYYVLGSMGERWAGKGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNKHRPGYD 81
Cdd:PRK13709 1 MSIAQVKSAGSAGNYYTDKDNYYVLGSMGERWAGEGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNKHRPGYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 82 LTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAV 161
Cdd:PRK13709 81 LTFSAPKSVSMMAMLGGDKRLIEAHNQAVDFAVRQVEALASTRVMTDGQSETVLTGNLVMALFNHDTSRDQDPQLHTHAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 162 VANVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVPVEAFSGRSQAI 241
Cdd:PRK13709 161 VANVTQHNGKWKTLSSDKVGKTGFIENVYANQIAFGKIYREALKEDVEALGYETEVVGKHGMWEMKGVPVEAFSSRSQEI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 242 REAVGEDASLKSRDVAALDTRKSKQHVDPEIRMAEWMQTLKETGFDIRAYRDAADQRTEIRTQAPGPASQDGPDVQQAVT 321
Cdd:PRK13709 241 REAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYREAADQRAEIRTQAPGPASQDGPDIQQAVT 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 322 QAIAGLSERKVQFTYTDVLARTVGILPPENGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMK 401
Cdd:PRK13709 321 QAIAGLSDRKVQFTYTDLLARTVGILPPENGVIERARAGIDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 402 QNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNLKQDER 481
Cdd:PRK13709 401 QNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQILAADRRSQMNLKQDER 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 482 LSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQRTGTGSALMAMKDAGVNTYRWQ 561
Cdd:PRK13709 481 LSGELITGRRQLQEGMAFTPGSTLIVDQAEKLSLKETLTLLDGAARHNVQVLILDSGQRTGTGSALMVLKDAGVNTYRWQ 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 562 GGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHPEVTMTALSPVWLDS 641
Cdd:PRK13709 561 GGEQRPATVISEPDKNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTGLIRSALKTQGVLGRPEVTITALSPVWLDS 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 642 RSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDSSWSLFRPEKMPVADGERLRVT 721
Cdd:PRK13709 641 KSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVKISSLDSSWSLFRPEKMPVADGERLRVL 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 722 GKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPASLPVSDSPFTALKLENGWVETPGHSVSDSATVFASVTQMAMDNAT 801
Cdd:PRK13709 721 GKIPGLRLKGGDRLQVTSVSEDGLTVVVPGRAEPATLPVDDSPFTALKLEHGWVETPGHSVSDSATVFASVTQRAMDNAT 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 802 LNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLETAISLQKAGLHTPAQQAIHLALPVLESKNLA 881
Cdd:PRK13709 801 LNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETDLETAISLQKAGLHTPAQQAIHLALPVLESKNLA 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 882 FSMVDLLTEAKSFAAEGTGFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERV 961
Cdd:PRK13709 881 FSMVDLLTEAKSFAAEGTSFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMERV 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 962 PGELMETLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPASERPRVVGLGPTHRAVGEMRSAGVDAQ 1041
Cdd:PRK13709 961 PGELMEGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDAQ 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1042 TQASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAA 1121
Cdd:PRK13709 1041 TLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAPGQPFRLMQTRSAA 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1122 DVAIMKEIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRLEGAWAPEHSVTEFSHSQEAKLAEAQQKAMQngeAF 1201
Cdd:PRK13709 1121 DVAIMKEIVRQTPELREAVYSLINRDVERALSGIESVKPSQVPRQEGAWAPESSVTEFSHPQEAKLAEAQQKAML---AF 1197
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1202 PDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWE 1281
Cdd:PRK13709 1198 PDVPMTLYEAIVRDYTGRTPEAREQTLIITHLNEDRRVLNSMIHDAREKAGELGKEQVTVPVLDTANIRDGELRRLSTWE 1277
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1282 THRDALALVDNVYHRIAGISKDDGLITLEDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSV 1361
Cdd:PRK13709 1278 AHRGALALVDNVYHRIAGIDKDDGLITLRDAEGNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSV 1357
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1362 WTVTAVSGDSVTLSDGQQTRVIRPGQEQAEQHIDLAYAITAHGAQGASETFAIALEGTEGNRKLMAGFESAYVALSRMKQ 1441
Cdd:PRK13709 1358 WTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETYAIALEGTEGGRKQMAGFESAYVALSRMKQ 1437
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1442 HVQVYTDNRQGWTDAINNAVQKGTAHDVLEPKPDREVMNAERLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAPGRK 1521
Cdd:PRK13709 1438 HVQVYTDNRQGWTDAINNAVQKGTAHDVLEPKPDREVMNAERLFSTARELRDTAAGRAVLRQAGLAGGDSPARFIAPGRK 1517
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1522 YPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGESLLADNMQDGVRIARDNPDS 1601
Cdd:PRK13709 1518 YPQPHVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSEDAQFVALQGSRNGESLLADNMQDGVRIARDNPDS 1597
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1602 GVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1681
Cdd:PRK13709 1598 GVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1677
|
1690 1700 1710 1720 1730 1740 1750
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1682 GKTELAVRDIAGQERDRSAISERETALPESVLRESQREREAVREVARENLLQERLQQMERDMVRDLQKEK 1751
Cdd:PRK13709 1678 GKTEQAVRDIAGQERDRAAISEREAALPESVLREPQREREAVREVARENLLRERLQQMERDMVRDLQKEK 1747
|
|
| PRK14712 |
PRK14712 |
conjugal transfer nickase/helicase TraI; Provisional |
134-1756 |
0e+00 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237796 [Multi-domain] Cd Length: 1623 Bit Score: 3010.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 134 VLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGY 213
Cdd:PRK14712 1 VLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQHNGEWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 214 ETEVVGKHGMWEMPGVPVEAFSGRSQAIREAVGEDASLKSRDVAALDTRKSKQHVDPEIRMAEWMQTLKETGFDIRAYRD 293
Cdd:PRK14712 81 ETEVVGKHGMWEMPGVPVEAFSGRSQTIREAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 294 AADQRTEIRTQAPGPASQDGPDVQQAVTQAIAGLSERKVQFTYTDVLARTVGILPPENGVIERARAGIDEAISREQLIPL 373
Cdd:PRK14712 161 AAEQRAYTRTQTPGPASQDGPDVQQAVTQAIAGLSERKVQFMYTDLLARTVGILPPENGVIERARAGIDEAISREQLIPL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 374 DREKGLFTSGIHVLDELSVRALSRDIMKQNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV 453
Cdd:PRK14712 241 DREKGLFTSGIHMLDELSVRALSRDIMKQNRVTVHPEKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 454 MMAREQGREVQIIAADRRSQMNLKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVL 533
Cdd:PRK14712 321 MMAREQGREVQIIAADRRSQMNLKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVL 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 534 ITDSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQA 613
Cdd:PRK14712 401 ITDSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 614 IRSELKTQGVLGHPEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTLRDAQGETQVV 693
Cdd:PRK14712 481 IRSELKTQGVLGHPEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVTERVTAQSHSLTLRNAQGETQVV 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 694 RISSLDSSWSLFRPEKMPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPASLPVSDSPFTALKLENG 773
Cdd:PRK14712 561 RISSLDSSWSLFRPEKMPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPATLPVSDSPFTALKLENG 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 774 WVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLETAI 853
Cdd:PRK14712 641 WVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQIKARAGETLLETAI 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 854 SLQKAGLHTPAQQAIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFTELGGEINAQIKRGDLLYVDVAKGYGTGLLVS 933
Cdd:PRK14712 721 SLQKAGLHTPAQQAIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFADLGGEINAQIKRGDLLYVDVAKGYGTGLLVS 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 934 RASYEAEKSILRHILEGKEAVTPLMERVPGELMETLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP 1013
Cdd:PRK14712 801 RASYEAEKSILRHILEGKEAVTPLMERVPGELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1014 ASERPRVVGLGPTHRAVGEMRSAGVDAQTQASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGR 1093
Cdd:PRK14712 881 ESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGR 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1094 AVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELREAVYSLINRDVERALSGLESVKPSQVPRLEGAWAPE 1173
Cdd:PRK14712 961 AVASGDTDQLQAIAPGQPFRLQQTRSAADVVIMKEIVRQTPELREAVYSLINRDVERALSGLERVKPSQVPRLEGAWAPE 1040
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1174 HSVTEFSHSQEAKLAEAQQKAMQNGEAFPDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGE 1253
Cdd:PRK14712 1041 HSVTEFSHSQEAKLAEAQQKAMLKGEAFPDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGE 1120
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1254 LGKEQVMVPVLNTANIRDGELRRLSTWETHRDALALVDNVYHRIAGISKDDGLITLEDAEGNTRLISPREAVAEGVTLYT 1333
Cdd:PRK14712 1121 LGQVQVMVPVLNTANIRDGELRRLSTWENNPDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVTLYT 1200
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1334 PDTIRVGTGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPGQEQAEQHIDLAYAITAHGAQGASETFA 1413
Cdd:PRK14712 1201 PDTIRVGTGDRIRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHIDLAYAITAHGAQGASETFA 1280
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1414 IALEGTEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGWTDAINNAVQKGTAHDVLEPKPDREVMNAERLFSTARELRD 1493
Cdd:PRK14712 1281 IALEGTEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGWTDAINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRD 1360
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1494 VAAGRAVLRQAGLAGGDSPARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVA 1573
Cdd:PRK14712 1361 VAAGRAVLRQAGLAGGDSPARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDAQFVA 1440
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1574 LQGSRNGESLLADNMQDGVRIARDNPDSGVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQA 1653
Cdd:PRK14712 1441 LQGSRNGESLLADNMQDGVRIARDNPDSGVVVRIAGEGRPWNPGAITGGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQA 1520
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1654 EEAIRRETERRADEIVRKMAENKPDLPDGKTELAVRDIAGQERDRSAISERETALPESVLRESQREREAVREVARENLLQ 1733
Cdd:PRK14712 1521 EEAIRRETERRADEIVRKMAENKPDLPDGKTEQAVREIAGQERDRAAITEREAALPESVLREPQRVREAVREVARENLLQ 1600
|
1610 1620
....*....|....*....|...
gi 1003482777 1734 ERLQQMERDMVRDLQKEKTLGGD 1756
Cdd:PRK14712 1601 ERLQQMERDMVRDLQKEKTPGGD 1623
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
1-1756 |
0e+00 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 1986.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1 MMSIAQVRSAGSAGNYYTDKDNYYVLGSM---GERWAGKGAEQLGLQG-SVDKDVFTRLLEGRLPDGADLSRMQDGSNKH 76
Cdd:TIGR02760 1 MMSISPLRSAGDAAAYYLDEDNYYLKDSKslnNTRWLGKGAEQLGLLGkPVEKEQFEALLSGTLPDGTQLGRIDKGGIHH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 77 RPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQ 155
Cdd:TIGR02760 81 RPGFDLTFSAPKSVSILALVGGDKRLIEAHDKAVKIAVSEMEKdAAQARQTVDGKTEFINTRNLVFAMFRHKTSRENDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 156 LHTHAVVANVTQ-HNGEWKTLSSDKVGKTGFI----ENVYANQIAFGRLYREKLKEQVEALGYETEVVGKhGMWEMPGVP 230
Cdd:TIGR02760 161 LHTHAVVQNMTHdSDGKWRSLASDMKGQKGVIegfrERIYNHQIYYGLLYRSKLAKKVEELGYQTASVGK-GQFEIQGVP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 231 ---VEAFSGRSQAIREAVGEDA--SLKSRDVAALDTRKSKQHVDPEIRMAEWMQTLKETGFDIRAYRDAADQRTEIRTQA 305
Cdd:TIGR02760 240 eqvLTAFSKRRQQIDELVDEKGwsSAKARDIAALDTRKDKTYIDDETLMEKWQQECKDMGFDPHALVASSYKPENIVARF 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 306 PGPASQDgpdVQQAVTQAIAGLSERKVQFTYTDVLARTVGILPPENGVIER--ARAGIDEAISREQLIPLDREKGLFTSG 383
Cdd:TIGR02760 320 YGPSQID---AQHAVEVAIAHLSQYSTQFEYEKLIEEAAKYFTAGNKIIDEidIKKAIDELIANGQLIPLFTQKGLFTTQ 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 384 IHVLDELSVRALSRDIMKQNRVTVHPEKSV--PRTAGYSDAVSVLAQDRPSLAIVSGQGGAaGQRERVAELVMMAREQGR 461
Cdd:TIGR02760 397 TMLTNEKELIARTEGGKGALRVIVSKQKLSefALSPSNKDAVSTLFTSTKRFIIINGFGGT-GSTEIAQLLLHLASEQGY 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 462 EVQIIAADRRSQMNLKQD-ERLSGELITGRRQLLEGM-------------AFTPGSTVIVDQGEKLSLKETLTLLDGAAR 527
Cdd:TIGR02760 476 EIQIITAGSLSAQELRQKiPRLASTFITWVKNLFNDDqdhtvqglldkssPFSNKDIFVVDEANKLSNNELLKLIDKAEQ 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 528 HNVQ-VLITDSGQRTG--TGSALMAMKDAGVNTYRWQGGEQRPATI-ISEPDRNVRYARLAGDFAASVKAGEESVAQVSG 603
Cdd:TIGR02760 556 HNSKlILLNDSAQRQGmsAGSAIDLLKEGGVTTYAWVDTKQQKASVeISEAVDKLRVDYIASAWLDLTPDRQNSQVLATT 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 604 VREQAILTQAIRSELKTQGVLGHPEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWNPETRSHDRYVIDRVTAQSHSLTL 683
Cdd:TIGR02760 636 HREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNAAHYKQGMVIRFWQKGKIPHDDYVVTNVNKHNNTLTL 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 684 RDAQGETQVVRISSL---DSSWSLFRPEKMPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVV-VPGRaepaSLP 759
Cdd:TIGR02760 716 KDAQGKTQKFKPSSLkdlERPFSVYRPEQLEVAAGERLQVTGNHFHSRVRNGELLTVSSINNEGITLItEDGQ----TLH 791
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 760 VSDSPFTALKLENGWVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLYSSLDET--RTAEKLARHPSFTVVS 837
Cdd:TIGR02760 792 LPHGALEDAHLDYGYVLTPYHTQPDDAKVFLGVKQYALSKALLNSLNRSASRVDLFTDLDEKaqRYLEKTRGIPSAIVVV 871
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 838 EQIKARAGETL-------LETAISLQKAGLHTPAQQ-----AIHLALPVLESKNLAFSMVDLLTEAKSFAAEGTGFTELG 905
Cdd:TIGR02760 872 DQKQHLPDAVTtnntdksLEMDISDTLHALEAKAKDgknsiALQYALEKVSEKEAAFKQKELVTEAYVFAFEETGFAIKA 951
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 906 GEINAQIKRGDLLYVDVAKGYGTG-LLVSRASYEAEKSILRHILEGKEAVTPLMERVPG----ELMETLTSGQRAATRMI 980
Cdd:TIGR02760 952 AEIAAALKNRPKLYRLLSAEYGDGtRWTTRAALRTETSILLHILPGKETVTPLATRAQVflnlELLERLTHGQKQAIHLI 1031
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 981 LETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPASERPRVVGLGPTHRAVGEMRSAGVDAQTQASFLHDTQLQQRSGEtp 1060
Cdd:TIGR02760 1032 ISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELKSAGVQAQTLDSFLTDISLYRNSGG-- 1109
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1061 DFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQ--TPELRE 1138
Cdd:TIGR02760 1110 DFRNTLFILDESSMVSNFQLTHATELVQKSGSRAVSLGDIAQLQSLAAGKPFELAITFDIIDTAIMKEIVRQnnSAELKA 1189
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1139 AVYSLINRDVERALSGLESVKPSQVPRLEGAWAPEHSVTEFSHsQEAKLAEAQQKAMQNGEAFPDVPMTLYEAIVRDYTG 1218
Cdd:TIGR02760 1190 AHNSLDKRSNPKALELLKNQNPLQHELMQNAAMPEIASDEQGL-QKHDLAKLAVNTEKPKKAQPDATVTLYREIVKDYLS 1268
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1219 RTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVMVPVLNTANIRDGELRRLSTWEThRDALALVDNVYHRIA 1298
Cdd:TIGR02760 1269 RTPEFRENTLIIAHTNNDRTGIYPFIREGLIKQKELSKQQVTVPRLRSVNISSPELKTMMPFEK-GAVLRLKKDAYLTIA 1347
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1299 GISKDDGLITLEDAE-GNTRLISPREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSVWTVTAV-SGDSVTLSD 1376
Cdd:TIGR02760 1348 DIDREHGKLTVADIKtGSERDILPRQLDHTFTSLYSDSELPLAKGDKIRLRATDKNRGIKANEVYTVTQVvNGLSVQLSK 1427
|
1450 1460 1470 1480 1490 1500 1510 1520
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1377 GQQTRVIRPGQeQAEQHIDLAYAITAHGAQGASETFAIALegtEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGWT-- 1454
Cdd:TIGR02760 1428 VKNSLSLKPIQ-AKDKHWDYAYTRTADSAQGATYTFVIAL---IKGRLALTNYRSAYIDLTRASHHVELYTDNKEGTVks 1503
|
1530 1540 1550 1560 1570 1580 1590 1600
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1455 ---------------------------------------------------DAINNAV---------------------- 1461
Cdd:TIGR02760 1504 wkqreanktsaveteedyrpkqstqfnnraqpheepkyqqkngplkiqsaaEIINEALpayteslaktllgepntqksrr 1583
|
1610 1620 1630 1640 1650 1660 1670 1680
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1462 -----------------------------QKGTAHDVLEPKPD---REVMN----------------------------- 1480
Cdd:TIGR02760 1584 drytfgakgglkvsltgkyrglwhdfstgEKGTLIQLIEAKKGlsfKEALNqaasllgipqhyqlsinikapqlsntepq 1663
|
1690 1700 1710 1720 1730 1740 1750 1760
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1481 --------AERLFSTARELRDVAAGRAVLRQAGLAGGDSPARFIAP-----GRKYPQPYVALPAFDRNGKSAGIWLNPLT 1547
Cdd:TIGR02760 1664 klnqlekrAKSLFQGSQELKGTLAEKYLKQHRGLASIDNDDIRFHPtvyssDKKNKHPALIAAARNEKGEITGIQITYLD 1743
|
1770 1780 1790 1800 1810 1820 1830 1840
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1548 TDDGNGLRGFSGEGRVKGSGDAQFVALQGSRNGE-SLLADNMQDGVRIARDNPDSGVVVRIAGegrpwnpgaitggrvwg 1626
Cdd:TIGR02760 1744 KDDANKDKDMDNNKRVKGSISGQFVVINKGMQGDrSYIAEGIETGLSIALANPKATVVIAVGG----------------- 1806
|
1850 1860 1870 1880 1890 1900 1910 1920
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1627 dipDNSVQPGAGNGEPVTAEVLAQRQAEEAIrreTERRADEIVRKMAENK-----------PDLPDGKTELAVRDIAGQE 1695
Cdd:TIGR02760 1807 ---KNNLSPIIPKFIPKNVVIVLDNDGEEAK---SQRAIEKIINKFKQDNisarivfpddwNDIGEEELQKQLMRAISSI 1880
|
1930 1940 1950 1960 1970 1980
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1003482777 1696 RDRSAISERETALPESVLRESQREREAVREVARENLLQERLQQM-------ERDMVRDLQKEKTLGGD 1756
Cdd:TIGR02760 1881 EDKDIEIPKAIADFESVLKMPNSDIISIIDNARTEREKSDLEQIvanehksQQALERDLNKEFTPDKR 1948
|
|
| relax_trwC |
TIGR02686 |
conjugative relaxase domain, TrwC/TraI family; This domain is in the N-terminal (relaxase) ... |
13-288 |
3.01e-139 |
|
conjugative relaxase domain, TrwC/TraI family; This domain is in the N-terminal (relaxase) region of TrwC, a relaxase-helicase that acts in plasmid R388 conjugation. The relaxase domain has DNA cleavage and strand transfer activities. Plasmid transfer protein TraI is also a member of this domain family. Members of this family on bacterial chromosomes typically are found near other genes typical of conjugative plasmids and appear to mark integrated plasmids. [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 274258 [Multi-domain] Cd Length: 283 Bit Score: 432.65 E-value: 3.01e-139
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 13 AGNYYTDKDNYYVLGSMGERWAGKGAEQLGLQGSVDKDVFTRLLEGRLPDGADLSRMQDGSNKHRPGYDLTFSAPKSVSM 92
Cdd:TIGR02686 1 AADYYTDGDNYYLKDSDAGRWLGKGAQELGLSGEVEKKQFEALLEGRLPDGTRLGRIEDRQSKHRPGFDLTFSAPKSVSI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 93 MAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQH-NG 170
Cdd:TIGR02686 81 LALVGGDPRLIDAHDEAVKFTLEQLEKeAAAARVTQDGEIEFEKTGNLVIALFRHDTSRANDPQLHTHAVVANMTRRsDG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 171 EWKTLSSDKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVP---VEAFSGRSQAIREAVGE 247
Cdd:TIGR02686 161 KWRSLSSDKKGKHGFIEEIYKNQIYLGLLYRAKLANELKELGYQTRVYGKHGNFEIDGVPeevIEAFSKRRQQIEEWVAE 240
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1003482777 248 D--ASLKSRDVAALDTRKSKQHVDPEIRMAEWMQTLKETGFDI 288
Cdd:TIGR02686 241 RgwSLAKSRDTAALDTRKKKTVHDREALREEWQQTAKELGFDP 283
|
|
| MobF |
NF041492 |
MobF family relaxase; |
1-281 |
5.45e-112 |
|
MobF family relaxase;
Pssm-ID: 469380 [Multi-domain] Cd Length: 288 Bit Score: 357.00 E-value: 5.45e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1 MMSIAQVRSAGSAGNYYTDKD--NYYVLG--SMGERWAGKGAEQLGL-QGSVDKDVFTRLLEGRLPDGADLSRMQDGSNK 75
Cdd:NF041492 1 MLSIARIGSAGGAARYYTEKDldNYYSEDggTPAGRWFGKGAEALGLsGGAVDGERFKALLDGRLPDGERLRRRRKGAGR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 76 HRPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVR-QVEALASTRVMTDGQSETVL--TGNLVMALFNHDTSRDQ 152
Cdd:NF041492 81 HRPGYDLTFSAPKSVSLLALVGGDKRLIEAHDEAVKEALEyLEERLAQTRVTVDGKGRTSLekTGNLVAALFRHDTSRAG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 153 EPQLHTHAVVANVTQH-NGEWKTLSSdkvgktgfiENVYANQIAFGRLYREKLKEQVEALGYETEVVgKHGMWEMPGVP- 230
Cdd:NF041492 161 DPQLHTHAVVMNMTQRpDGKWRSLDN---------EELYKNQKALGAIYQAELAEELQALGYEIRET-KNGQFEIAGVPr 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1003482777 231 --VEAFSGRSQAIREAVGED----ASLKSRDVAALDTRKSKQ-HVDPEIRMAEWMQTL 281
Cdd:NF041492 231 eqIEAFSKRSQQIEEWLGENpatlASAALRQIAALDTRKAKEaDVDPEELEAEWREEA 288
|
|
| TrwC |
pfam08751 |
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative ... |
10-283 |
2.11e-97 |
|
TrwC relaxase; Relaxases are DNA strand transferases which function during the conjugative cell to cell DNA transfer. TrwC binds to the origin of transfer (oriT) and melts the double helix.
Pssm-ID: 430190 [Multi-domain] Cd Length: 279 Bit Score: 315.32 E-value: 2.11e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 10 AGSAGNYYTDKDNYYVL-GSMGERWAGKGAEQLGLQGSVDKDVFTRLLEGRLPD-GADLSRMQDGSNKHRPGYDLTFSAP 87
Cdd:pfam08751 1 AGDAYAYYTRQDDYYTEgGEPPGRWLGKGAAALGLSGEVTEEQFEALLEGRHPDtGERLGRRRPRGRKHRAGFDLTFSAP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 88 KSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEA-LASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVT 166
Cdd:pfam08751 81 KSVSLLAAVGGDERIEAAHRAAVAEALAWLEKhAAQTRVGKDGGVEQVDTGGLVAAAFRHDTSRAGDPQLHTHVVVANVT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 167 Q-HNGEWKTLSSDKvgktgfienVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVP---VEAFSGRSQAIR 242
Cdd:pfam08751 161 QrEDGKWRALDSRG---------LYKAQVAAGAVYRAELADELRRLGYEIEERGKRGVFEIAGVPeelIEAFSKRRAQIE 231
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1003482777 243 EAVGE------DASLKSRDVAALDTRKSK-QHVDPEIRMAEWMQTLKE 283
Cdd:pfam08751 232 AELAElgathgRAPPAARQIAALETRPAKhEPRSLAELRARWREEAAE 279
|
|
| TraI |
pfam07057 |
DNA helicase TraI; This family represents a conserved region approximately 130 residues long ... |
1434-1557 |
2.99e-84 |
|
DNA helicase TraI; This family represents a conserved region approximately 130 residues long within the bacterial DNA helicase TraI (EC:3.6.1.-). TraI is a bifunctional protein that catalyzes the unwinding of duplex DNA as well as acts as a sequence-specific DNA trans-esterase, providing the site- and strand-specific nick required to initiate DNA transfer.
Pssm-ID: 429268 [Multi-domain] Cd Length: 124 Bit Score: 271.10 E-value: 2.99e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1434 VALSRMKQHVQVYTDNRQGWTDAINNAVQKGTAHDVLEPKPDREVMNAERLFSTARELRDVAAGRAVLRQAGLAGGDSPA 1513
Cdd:pfam07057 1 VALSRMKQHVQVYTDNRQGWIKAINNAPQKGTAHDVLEPKNDREVMNADRLFSTARELRDVAAGRAVLRQAGLAQGDSPA 80
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1003482777 1514 RFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGF 1557
Cdd:pfam07057 81 RFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGRGLRGF 124
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
937-1468 |
6.50e-49 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 183.25 E-value: 6.50e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 937 YEAEKSILRHILEGK------EAVTPLMERVPGELMETLTSGQRAATRMILETSdRFTVVQGYAGVGKTTqfraVMSAVN 1010
Cdd:COG0507 87 LEAEQRLARRLRRLArpaldeADVEAALAALEPRAGITLSDEQREAVALALTTR-RVSVLTGGAGTGKTT----TLRALL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1011 MLPASERPRVVGLGPTHRAVGEMR-SAGVDAQTQASFLH---DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYAL 1086
Cdd:COG0507 162 AALEALGLRVALAAPTGKAAKRLSeSTGIEARTIHRLLGlrpDSGRFRHNRDNPLTPADLLVVDEASMVDTRLMAALLEA 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1087 IAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELREAVYS-LINR-DVERALSglesvkpsqvp 1164
Cdd:COG0507 242 LPRAGARLILVGDPDQLPSVGAGAVLRDLIESGTVPVVELTEVYRQADDSRIIELAhAIREgDAPEALN----------- 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1165 rlegAWAPEHSVTEFSHSQEAKlaeaqqkamqngeafpdvpmtlyEAIVRDYTGRtPEAREQTLIVTHLNEDRRVLNSMI 1244
Cdd:COG0507 311 ----ARYADVVFVEAEDAEEAA-----------------------EAIVELYADR-PAGGEDIQVLAPTNAGVDALNQAI 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1245 HDAREKAGELGKEQvmvpvlntanIRDGELRrlstwethrdalalvdnvyhriagiskddglitledaegntrlisprea 1324
Cdd:COG0507 363 REALNPAGELEREL----------AEDGELE------------------------------------------------- 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1325 vaegvtlytpdtIRVgtGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLS---DGQQTRVIRPGQeqaEQHIDLAYAIT 1401
Cdd:COG0507 384 ------------LYV--GDRVMFTRNDYDLGVFNGDIGTVLSIDEDEGRLTvrfDGREIVTYDPSE---LDQLELAYAIT 446
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1003482777 1402 AHGAQGAseTF--AIALEGTEGNRklMAGFESAYVALSRMKQHVQVYTDNRQgWTDAINNAVQKGTAHD 1468
Cdd:COG0507 447 VHKSQGS--TFdrVILVLPSEHSP--LLSRELLYTALTRARELLTLVGDRDA-LARAVRRDTARATGLA 510
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
972-1130 |
6.91e-38 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 139.61 E-value: 6.91e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 972 GQRAATRMILetSDRFTVVQGYAGVGKTTQFRAVMSAVNMlpasERPRVVGLGPTHRAVGEMR-SAGVDAQTQASFLHDT 1050
Cdd:cd17933 1 EQKAAVRLVL--RNRVSVLTGGAGTGKTTTLKALLAALEA----EGKRVVLAAPTGKAAKRLSeSTGIEASTIHRLLGIN 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1051 QLQQRS--GETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGgRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKE 1128
Cdd:cd17933 75 PGGGGFyyNEENPLDADLLIVDEASMVDTRLMAALLSAIPAGA-RLILVGDPDQLPSVGAGNVLRDLIASKGVPTVELTE 153
|
..
gi 1003482777 1129 IV 1130
Cdd:cd17933 154 VF 155
|
|
| TraI_2B |
pfam18340 |
DNA relaxase TraI 2B/2B-like domain; This is the 2B and 2B-like sub-domain found in TraI (EC:5. ... |
633-712 |
1.03e-35 |
|
DNA relaxase TraI 2B/2B-like domain; This is the 2B and 2B-like sub-domain found in TraI (EC:5.99.1.2) a relaxase of F-family plasmids. It contains four domains; a trans-esterase domain that executes the nicking and covalent attachment of the T-strand to the relaxase, a vestigial helicase domain (carrying the 2B/2B-like sub-domain) that operates as an ssDNA-binding domain, an active 5' to 3' helicase domain, and a C-terminal domain that functions as a recruitment platform for relaxosome components. The 2B sub-domains in TraI are formed by residues 625-773 in the vestigial helicase domain and residues 1255-1397 in the active helicase domain. The 2B/2B-like sub-domain interacts with ssDNA where it contributes to the surface area where ssDNA bind. In other words the ssDNA-binding site is located in a groove between the 2B and 2B-like parts of the sub-domain. The sub-domain parts appear to act as clamps holding the ssDNA in place, resulting in the ssDNA being completely surrounded by protein. In previous studies, the 2B/2B-like sub-domain of the TraI vestigial helicase domain has been identified as translocation signal A (TSA) since it contains sequences essential for the recruitment of TraI to the T4S system. Thus, the 2B/2B-like sub-domain plays two major roles in relaxase function: (1) interacting with the DNA and possibly promoting high processivity and (2) mediating recruitment of the relaxosome to the T4S system.
Pssm-ID: 465718 [Multi-domain] Cd Length: 79 Bit Score: 130.47 E-value: 1.03e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 633 ALSPVWLDSRSRYLRDMYRPGMVMEQWNPeTRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDSSWSLFRPEKMPV 712
Cdd:pfam18340 1 TLTPVWLDSKNRRSRDSYREGMVLERWNG-ARKKQRFTIDRVTEKTNSLTLVDAKGETSTLKISEIDSHWRLFRSDKLEV 79
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
968-1156 |
3.37e-34 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 130.38 E-value: 3.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 968 TLTSGQRAATRMILETSDRFTVVQGYAGVGKTTqfraVMSAVNMLPASERPRVVGLGPTHRAVGEMR-SAGVDAQTQASF 1046
Cdd:pfam13604 1 TLNAEQAAAVRALLTSGDRVAVLVGPAGTGKTT----ALKALREAWEAAGYRVIGLAPTGRAAKVLGeELGIPADTIAKL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1047 LHDTQLQQRSGetpdfSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFR-LQQTRsaADVAI 1125
Cdd:pfam13604 77 LHRLGGRAGLD-----PGTLLIVDEAGMVGTRQMARLLKLAEDAGARVILVGDPRQLPSVEAGGAFRdLLAAG--IGTAE 149
|
170 180 190
....*....|....*....|....*....|..
gi 1003482777 1126 MKEIVRQT-PELREAVYSLINRDVERALSGLE 1156
Cdd:pfam13604 150 LTEIVRQRdPWQRAASLALRDGDPAEALDALA 181
|
|
| TraA_Ti |
TIGR02768 |
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a ... |
934-1450 |
1.41e-19 |
|
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Pssm-ID: 274289 [Multi-domain] Cd Length: 744 Bit Score: 95.64 E-value: 1.41e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 934 RASYEAEKSILRHILEGKEAVTPLMERVPGELMETLTSGQRAATRMILEtSDRFTVVQGYAGVGKTTqfraVMSAVNMLP 1013
Cdd:TIGR02768 318 RLEAQMARSAEALSQSQGHGVSPPIVDAAIDQHYRLSEEQYEAVRHVTG-SGDIAVVVGRAGTGKST----MLKAAREAW 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1014 ASERPRVVGLGPTHRAVGEMR-SAGVDAQTQASFlhdtQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGG 1092
Cdd:TIGR02768 393 EAAGYRVIGAALSGKAAEGLQaESGIESRTLASL----EYAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEAGA 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1093 RAVASGDTDQLQAIAPGQPFRLQQTRSAAdvAIMKEIVRQTPE-LREAVYSLINRDVERALsglesvkpsqvprleGAWA 1171
Cdd:TIGR02768 469 KVVLVGDPEQLQPIEAGAAFRAIAERIGY--AELETIRRQREAwARQASLELARGDVEKAL---------------AAYR 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1172 PEHSVTEfshsqeaklAEAQQKAMqngeafpdvpmtlyEAIVRDYTGRTPEAREQ--TLIVTHLNEDRRVLNSMIHDARE 1249
Cdd:TIGR02768 532 DHGHITI---------HDTREEAI--------------EQVVADWKQDLREANPAgsQIMLAHTRKDVRALNEAAREALI 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1250 KAGELGKEqvmvpvlntanirdgelrrlstwethrdalalvdnvyhriagiskddglITLEDAEGNTRLispreavaegv 1329
Cdd:TIGR02768 589 ERGELGES-------------------------------------------------ILFQTARGERKF----------- 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1330 tlytpdtirvGTGDRMRFTKSDRERGYVANSVWTVTAVSGD--SVTLSDGQQTRVirpgQEQAEQHIDLAYAITAHGAQG 1407
Cdd:TIGR02768 609 ----------AAGDRIVFLENNRDLGVKNGMLGTVEEIEDGrlVVQLDSGELVII----PQAEYDALDHGYATTIHKSQG 674
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1003482777 1408 ASETFAIALEGTEGNRKLmagfesAYVALSRMKQHVQVYTDNR 1450
Cdd:TIGR02768 675 VTVDRAFVLASKSMDRHL------AYVAMTRHRESVQLYAGKE 711
|
|
| ssDNA_TraI_N |
pfam18272 |
single-stranded DNA binding TraI N-terminal subdomain; This is a subdomain found in TraI ... |
575-625 |
3.38e-18 |
|
single-stranded DNA binding TraI N-terminal subdomain; This is a subdomain found in TraI present in E. coli. Tra1 is a conjugative relaxase that forms part of the Type IV secretion system. This subdomain, referred to as 2A, is located in N-terminal region of the translocation signal (TSA) domain. TSA is known to reside in a larger ssDNA-binding domain.
Pssm-ID: 408086 [Multi-domain] Cd Length: 53 Bit Score: 79.84 E-value: 3.38e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1003482777 575 DRNVRYARLAGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLG 625
Cdd:pfam18272 1 DKAQRYGRLAKEFVQAVREGEESVAQVSGPREQAVLAGMIRDELKEEGVLG 51
|
|
| PRK13826 |
PRK13826 |
Dtr system oriT relaxase; Provisional |
967-1255 |
1.55e-09 |
|
Dtr system oriT relaxase; Provisional
Pssm-ID: 237524 [Multi-domain] Cd Length: 1102 Bit Score: 63.26 E-value: 1.55e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 967 ETLTSGQRAATRMILETSdRFTVVQGYAGVGKTTQFRAVMSAVNMLPAserpRVVGLGPTHRAV-GEMRSAGVDAQTQAS 1045
Cdd:PRK13826 380 ARLSDEQKTAIEHVAGPA-RIAAVVGRAGAGKTTMMKAAREAWEAAGY----RVVGGALAGKAAeGLEKEAGIQSRTLSS 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1046 FlhdtQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAadVAI 1125
Cdd:PRK13826 455 W----ELRWNQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGAAFRAIADRIG--YAE 528
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1126 MKEIVRQTPE-LREAVYSLINRDVERALSGL--------ESVKPSQVPRLEGAWApehsvtefshsqeaklaeaqqkamq 1196
Cdd:PRK13826 529 LETIYRQREQwMRDASLDLARGNVGKALDAYrangrvigSRLKAEAVESLIADWN------------------------- 583
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1003482777 1197 ngeafpdvpmtlyeaivRDYtgrtpEAREQTLIVTHLNEDRRVLNSMihdAREKAGELG 1255
Cdd:PRK13826 584 -----------------RDY-----DPTKTTLILAHLRRDVRMLNEM---ARAKLVERG 617
|
|
| AAA_19 |
pfam13245 |
AAA domain; |
973-1103 |
1.58e-08 |
|
AAA domain;
Pssm-ID: 433059 [Multi-domain] Cd Length: 136 Bit Score: 54.92 E-value: 1.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 973 QRAATRMILEtsDRFTVVQGYAGVGKTTQFRAVMSAVNMLpASERPRVVGLGPTHRAVGEMRSA-GVDAQTQASFLH--- 1048
Cdd:pfam13245 1 QREAVRTALP--SKVVLLTGGPGTGKTTTIRHIVALLVAL-GGVSFPILLAAPTGRAAKRLSERtGLPASTIHRLLGfdd 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1003482777 1049 DTQLQQRSGETPDFSNTLFLLDESSMVgntDMARAYALIAA--GGGRAVASGDTDQL 1103
Cdd:pfam13245 78 LEAGGFLRDEEEPLDGDLLIVDEFSMV---DLPLAYRLLKAlpDGAQLLLVGDPDQL 131
|
|
| SF1_C_RecD |
cd18809 |
C-terminal helicase domain of RecD family helicases; RecD is a member of the RecBCD (EC 3.1.11. ... |
1396-1447 |
6.81e-08 |
|
C-terminal helicase domain of RecD family helicases; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD family helicases are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350196 [Multi-domain] Cd Length: 80 Bit Score: 51.41 E-value: 6.81e-08
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1003482777 1396 LAYAITAHGAQGASETFAIALEGTEGNrklMAGFESAYVALSRMKQHVQVYT 1447
Cdd:cd18809 32 QAYAMTIHKSQGSEFDRVIVVLPTSHP---MLSRGLLYTALTRARKLLTLVG 80
|
|
| PRK13889 |
PRK13889 |
conjugal transfer relaxase TraA; Provisional |
969-1446 |
3.39e-05 |
|
conjugal transfer relaxase TraA; Provisional
Pssm-ID: 237546 [Multi-domain] Cd Length: 988 Bit Score: 48.92 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 969 LTSGQRAATRMILETSDrFTVVQGYAGVGKTTqfravmsavnML----PASERP--RVVGLGPTHRAVGEMRS-AGVDAQ 1041
Cdd:PRK13889 347 LSGEQADALAHVTDGRD-LGVVVGYAGTGKSA----------MLgvarEAWEAAgyEVRGAALSGIAAENLEGgSGIASR 415
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1042 TQASFLHDTQlQQRSGETpdfSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAA 1121
Cdd:PRK13889 416 TIASLEHGWG-QGRDLLT---SRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEAGAAFRSIHERHGG 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1122 dvAIMKEIVRQTPE-LREAVYSLINRDVERALsglesvkpsqvprlegawapeHSVTEFSHSQEAKLAEAQQKAmqngea 1200
Cdd:PRK13889 492 --AEIGEVRRQREDwQRDATRDLATGRTGEAL---------------------DAYEAHGMVHAAATREQARAD------ 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1201 fpdvpmtLYEAIVRDytgRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGkeqvmvpvlntanirdgelrrlstw 1280
Cdd:PRK13889 543 -------LIDRWDRD---RQAAPDRSRIILTHTNDEVRALNEAARERMRAAGDLG------------------------- 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1281 ethrdalalvdnvyhriagiskDDGLITLEDAEGNtrlispreavaegvtlytpdtirVGTGDRMRFTKSDRERGYVANS 1360
Cdd:PRK13889 588 ----------------------DDVRVTVERGERS-----------------------FASGDRVMFLQNERGLGVKNGT 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482777 1361 VWTVTAVSGDSVT--LSDGQQTRVirpgQEQAEQHIDLAYAITAHGAQGAS--ETFAIALEGTEGNrklmagfeSAYVAL 1436
Cdd:PRK13889 623 LGTIEQVSAQSMSvrLDDGRSVAF----DLKDYDRIDHGYAATIHKAQGMTvdRTHVLATPGMDAH--------SSYVAL 690
|
490
....*....|
gi 1003482777 1437 SRMKQHVQVY 1446
Cdd:PRK13889 691 SRHRDGVDLH 700
|
|
| |
