|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
93-505 |
6.58e-72 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 238.94 E-value: 6.58e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 93 FETARKLGASDIHFLISESIFKVRMRIFGELQTVDEDQPALgyslcATAILS----MA--DVTETSffpqREQDARLSPQ 166
Cdd:COG2804 187 LEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSL-----APALVSrikiMAnlDIAERR----LPQDGRIKLR 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 167 LM-RKIGIfgaRYSHRPTGDGLIAVMRLIpDDGDKVPTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKSTTLRSA 245
Cdd:COG2804 258 LGgREIDL---RVSTLPTVYGEKVVLRIL-DKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTTTLYAA 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 246 CRvYLDDnQGRHLLTIEDPLEGQILGATQTPIIcdksdeDAVKLAWSRAISSAMRLDPDAIMEGEMRDL----ISMMstt 321
Cdd:COG2804 334 LN-ELNT-PERNIITVEDPVEYQLPGINQVQVN------PKIGLTFASALRSILRQDPDVIMVGEIRDLetaeIAVQ--- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 322 yAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAqlLIGMISQRLVPTLCPSCRIPWETRAPELRDDERDYLErhc 401
Cdd:COG2804 403 -AALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASS--LLGVLAQRLVRRLCPHCKEPYEPDPEELERLGLPPEE--- 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 402 nkdslcsTDNIWFRNPHGCSECNHdviingrkrgeigKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMKGIS 481
Cdd:COG2804 477 -------LAPLTFYRGVGCEHCNG-------------TGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRT 536
|
410 420
....*....|....*....|....
gi 1003482711 482 RVEHLLRRINEGLVDPLEADRIIP 505
Cdd:COG2804 537 LREDGLEKVLQGITTLEEVLRVTG 560
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
220-371 |
1.09e-60 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 196.55 E-value: 1.09e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 220 MLRRPEGKIVLSGPTGSGKSTTLRSACRVYLDDNqgRHLLTIEDPLEGQILGATQTPIICDKSdedavkLAWSRAISSAM 299
Cdd:cd01129 6 LIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPE--RNIITIEDPVEYQIPGINQSQVNEKIG------LTFADALRAIL 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1003482711 300 RLDPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAqlLIGMISQRLV 371
Cdd:cd01129 78 RQDPDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASA--LRGVIAQRLV 147
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
76-503 |
1.50e-53 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 187.97 E-value: 1.50e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 76 LKDLADVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGELQTVDEDQPALgyslcATAILS----MA--DVT 149
Cdd:TIGR02533 99 LLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKL-----HAALVSrvkiMAklNIA 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 150 ETSFfpqrEQDARLSPQLM-RKIGIfgaRYSHRPTGDGLIAVMRLIpDDGDKVPTFKQLGFIPEQIRLLNIMLRRPEGKI 228
Cdd:TIGR02533 174 EKRL----PQDGRISLRVGgRDIDI---RVSTVPTSHGERVVMRLL-DKTAVRLDLETLGMSPELLSRFERLIRRPHGII 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 229 VLSGPTGSGKSTTLRSACRVyLDDNqGRHLLTIEDPLEGQILGATQTPIicdksdEDAVKLAWSRAISSAMRLDPDAIME 308
Cdd:TIGR02533 246 LVTGPTGSGKTTTLYAALSR-LNTP-ERNILTVEDPVEYQIEGIGQIQV------NPKIGLTFAAGLRAILRQDPDIIMV 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 309 GEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLIcdAQLLIGMISQRLVPTLCPSCRIPWETrape 388
Cdd:TIGR02533 318 GEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLL--ASSLLGVLAQRLVRRLCPHCKEPYEA---- 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 389 lRDDERDYLERHCNKDslcstDNIWfrNPHGCSECNHdviingrkrgeigKGLTGRTVIAEVIEPDNRLFQ-ILKTRGKV 467
Cdd:TIGR02533 392 -TPEEIALFGISPEGP-----INLY--RPVGCPHCNH-------------TGYLGRTGIYELLIVDDDLRSlIHSRADEG 450
|
410 420 430
....*....|....*....|....*....|....*..
gi 1003482711 468 AARKYWLEN-MKGISrvEHLLRRINEGLVDPLEADRI 503
Cdd:TIGR02533 451 EIKEIARAAgMRTLR--DDGLRKVLAGITTIEEVLRV 485
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
93-374 |
5.93e-53 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 180.17 E-value: 5.93e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 93 FETARKLGASDIHFLISESIFKVRMRIFGELQTVDEDQPALGYSLcATAILSMA--DVTETsffpQREQDARLSPQLMRK 170
Cdd:pfam00437 4 PLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARL-ISRIKVMArlDISER----RPPQDGRLPLRIGGK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 171 IGIFgaRYSHRPTGDGLIAVMRLIPDDGDKVpTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKSTTLRSAcrVYL 250
Cdd:pfam00437 79 GVRV--RVSTLPTAGGEKLVIRLLDPSNVAL-SLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAA--LGE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 251 DDNQGRHLLTIEDPLEGQILGATQTPIicdksdEDAVKLAWSRAISSAMRLDPDAIMEGEMRDLISMMSTTYAAQTGHIV 330
Cdd:pfam00437 154 LNTRDENIVTVEDPVEIQLEGINQVQL------NARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLV 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1003482711 331 LTTLHTNSALGIPERMITMGMNADLIcdAQLLIGMISQRLVPTL 374
Cdd:pfam00437 228 LSTLHTNSAAGALTRLQDMGVPPFEL--ASSLLLVIAQRLVRKL 269
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
101-461 |
4.41e-44 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 162.02 E-value: 4.41e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 101 ASDIHFLISESIFKVRMRIFGELQTVDEDQPALGYSLCAT-AILSMADVTEtsffpQR-EQDARLSPQLMrkigifGARY 178
Cdd:PRK10436 100 ASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARlKVLGNLDIAE-----RRlPQDGQFTVELA------GNAY 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 179 SHR----PTGDGLIAVMRLIPDDGdKVPTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKSTTLRSACRvYLDDNQ 254
Cdd:PRK10436 169 SFRiatlPCRGGEKVVLRLLQQVQ-QALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQ-TLNTAQ 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 255 gRHLLTIEDPLEGQILGATQTPIIcDKSDedavkLAWSRAISSAMRLDPDAIMEGEMRDL----ISMMsttyAAQTGHIV 330
Cdd:PRK10436 247 -INICSVEDPVEIPLAGINQTQIH-PKAG-----LTFQRVLRALLRQDPDVIMVGEIRDGetaeIAIK----AAQTGHLV 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 331 LTTLHTNSALGIPERMITMGMNADLICDAQLLIgmISQRLVPTLCPSCRIPWEtrapelrdderdylerhcnkDSLCSTD 410
Cdd:PRK10436 316 LSTLHTNSTSETLVRLQQMGIARWMLASALKLV--IAQRLVRKLCPHCRQQAS--------------------EPIHLPP 373
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1003482711 411 NIWFR-----NPHGCSECNHdviingrkrgeigkGLTGRTVIAEVIEPDNRLFQIL 461
Cdd:PRK10436 374 NIWPGplphwQAVGCEHCYH--------------GYYGRTALFEVLPITPVLQQAI 415
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
93-373 |
2.03e-39 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 144.13 E-value: 2.03e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 93 FETARKLGASDIHFLISESIFKVRMRIFGELQTVDEdqpaLGYSLCATAI-----LSMADVTET------SF---FPQRE 158
Cdd:NF041000 4 IEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRE----LSLEEGQRLIsyfkfLAGMDIGEKrrpqsgAFtyeLNEQQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 159 QDARLSpqlmrKIGIFGARYShrptgdgliAVMRLIPDDGDKVPTFkqlgFIPEQIRLLNIMLRRPEGKIVLSGPTGSGK 238
Cdd:NF041000 80 ISLRLS-----TVGDFLGRES---------LVIRLLYQLEQIKPQL----FFPEQFQLLKQLLQRRSGLILFSGPTGSGK 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 239 STTLRSACRvylDDNQGRHLLTIEDPLEGQILGATQTPIicdksDEDAvKLAWSRAISSAMRLDPDAIMEGEMRDlismm 318
Cdd:NF041000 142 TTTMYSLAR---KLALNKQVITIEDPVEIKEPNFLQLQV-----NEKA-GMTYDTLLKAALRHRPDILIIGEIRD----- 207
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 319 STT-----YAAQTGHIVLTTLHTNSALGIPERMITMGMNADLIcdAQLLIGMISQRLVPT 373
Cdd:NF041000 208 AETakaaiRAALTGHLVLSTVHAKSAAGVIYRLLELGISKEEL--EQTLIGISYQRLIPT 265
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
226-348 |
3.30e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 38.12 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 226 GKIVLSGPTGSGKSTTLRSACRVYLDDNQGRHLLTIEDPLEGQILGATQTPIICDK---SDEDAVKLAWSRAISSAMRL- 301
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKasgSGELRLRLALALARKLKPDVl 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1003482711 302 ---------DPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMIT 348
Cdd:smart00382 83 ildeitsllDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRF 138
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PulE |
COG2804 |
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell ... |
93-505 |
6.58e-72 |
|
Type II secretory pathway ATPase GspE/PulE or T4P pilus assembly pathway ATPase PilB [Cell motility, Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442055 [Multi-domain] Cd Length: 561 Bit Score: 238.94 E-value: 6.58e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 93 FETARKLGASDIHFLISESIFKVRMRIFGELQTVDEDQPALgyslcATAILS----MA--DVTETSffpqREQDARLSPQ 166
Cdd:COG2804 187 LEDAIKEGASDIHIEPYEKRLRVRFRIDGVLREVLRLPKSL-----APALVSrikiMAnlDIAERR----LPQDGRIKLR 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 167 LM-RKIGIfgaRYSHRPTGDGLIAVMRLIpDDGDKVPTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKSTTLRSA 245
Cdd:COG2804 258 LGgREIDL---RVSTLPTVYGEKVVLRIL-DKSAALLDLEQLGFSPDQLERLRRLIRRPHGIILVTGPTGSGKTTTLYAA 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 246 CRvYLDDnQGRHLLTIEDPLEGQILGATQTPIIcdksdeDAVKLAWSRAISSAMRLDPDAIMEGEMRDL----ISMMstt 321
Cdd:COG2804 334 LN-ELNT-PERNIITVEDPVEYQLPGINQVQVN------PKIGLTFASALRSILRQDPDVIMVGEIRDLetaeIAVQ--- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 322 yAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAqlLIGMISQRLVPTLCPSCRIPWETRAPELRDDERDYLErhc 401
Cdd:COG2804 403 -AALTGHLVLSTLHTNDAPSAITRLLDMGVEPFLLASS--LLGVLAQRLVRRLCPHCKEPYEPDPEELERLGLPPEE--- 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 402 nkdslcsTDNIWFRNPHGCSECNHdviingrkrgeigKGLTGRTVIAEVIEPDNRLFQILKTRGKVAARKYWLENMKGIS 481
Cdd:COG2804 477 -------LAPLTFYRGVGCEHCNG-------------TGYKGRTGIYELLVIDDELRELIAEGASAAELREAARKEGMRT 536
|
410 420
....*....|....*....|....
gi 1003482711 482 RVEHLLRRINEGLVDPLEADRIIP 505
Cdd:COG2804 537 LREDGLEKVLQGITTLEEVLRVTG 560
|
|
| PulE-GspE-like |
cd01129 |
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II ... |
220-371 |
1.09e-60 |
|
PulE-GspE family; PulE and General secretory pathway protein GspE are ATPases of the type II secretory pathway, the main terminal branch of the general secretory pathway (GSP). PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PilB, a type IV pilus assembly ATPase, DotB, an ATPase of the type IVb secretion system, also known as the dot/icm system, Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ, and HofB.
Pssm-ID: 410873 [Multi-domain] Cd Length: 159 Bit Score: 196.55 E-value: 1.09e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 220 MLRRPEGKIVLSGPTGSGKSTTLRSACRVYLDDNqgRHLLTIEDPLEGQILGATQTPIICDKSdedavkLAWSRAISSAM 299
Cdd:cd01129 6 LIKRPHGLILVTGPTGSGKTTTLYAMLRELNGPE--RNIITIEDPVEYQIPGINQSQVNEKIG------LTFADALRAIL 77
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1003482711 300 RLDPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAqlLIGMISQRLV 371
Cdd:cd01129 78 RQDPDIIMVGEIRDAETAEIAIRAALTGHLVLSTLHTNDALGAITRLLDMGIEPFLLASA--LRGVIAQRLV 147
|
|
| type_II_gspE |
TIGR02533 |
type II secretion system protein E; This family describes GspE, the E protein of the type II ... |
76-503 |
1.50e-53 |
|
type II secretion system protein E; This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]
Pssm-ID: 131585 [Multi-domain] Cd Length: 486 Bit Score: 187.97 E-value: 1.50e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 76 LKDLADVSESEKKVLSYFETARKLGASDIHFLISESIFKVRMRIFGELQTVDEDQPALgyslcATAILS----MA--DVT 149
Cdd:TIGR02533 99 LLDLEDDAPVIRLVNSLLSRAVKERASDIHIEPFEKALVVRFRVDGVLRDVLSPPKKL-----HAALVSrvkiMAklNIA 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 150 ETSFfpqrEQDARLSPQLM-RKIGIfgaRYSHRPTGDGLIAVMRLIpDDGDKVPTFKQLGFIPEQIRLLNIMLRRPEGKI 228
Cdd:TIGR02533 174 EKRL----PQDGRISLRVGgRDIDI---RVSTVPTSHGERVVMRLL-DKTAVRLDLETLGMSPELLSRFERLIRRPHGII 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 229 VLSGPTGSGKSTTLRSACRVyLDDNqGRHLLTIEDPLEGQILGATQTPIicdksdEDAVKLAWSRAISSAMRLDPDAIME 308
Cdd:TIGR02533 246 LVTGPTGSGKTTTLYAALSR-LNTP-ERNILTVEDPVEYQIEGIGQIQV------NPKIGLTFAAGLRAILRQDPDIIMV 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 309 GEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLIcdAQLLIGMISQRLVPTLCPSCRIPWETrape 388
Cdd:TIGR02533 318 GEIRDLETAQIAIQASLTGHLVLSTLHTNDAAGAVTRLIDMGVEPFLL--ASSLLGVLAQRLVRRLCPHCKEPYEA---- 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 389 lRDDERDYLERHCNKDslcstDNIWfrNPHGCSECNHdviingrkrgeigKGLTGRTVIAEVIEPDNRLFQ-ILKTRGKV 467
Cdd:TIGR02533 392 -TPEEIALFGISPEGP-----INLY--RPVGCPHCNH-------------TGYLGRTGIYELLIVDDDLRSlIHSRADEG 450
|
410 420 430
....*....|....*....|....*....|....*..
gi 1003482711 468 AARKYWLEN-MKGISrvEHLLRRINEGLVDPLEADRI 503
Cdd:TIGR02533 451 EIKEIARAAgMRTLR--DDGLRKVLAGITTIEEVLRV 485
|
|
| T2SSE |
pfam00437 |
Type II/IV secretion system protein; This family contains components of both the Type II ... |
93-374 |
5.93e-53 |
|
Type II/IV secretion system protein; This family contains components of both the Type II protein secretion system (T2SS), including Type 4 pilus (T4P), and Type IV protein secretion system (T4SS) from Gram-negative bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection. The cytoplasmic T2S E ATPase is a Zn-containing protein thought to provide the mechanical force for the secretion process. T2S-E contains Walker A and B motifs, that are essential for secretion and ATPase activity. ATPase PulE and XcpR from Klebsiella oxytoca and Pseudomonas aeruginosa respectively are required for protein secretion via the T2SS. ATPase PilB is required for T4P extension.
Pssm-ID: 425681 [Multi-domain] Cd Length: 269 Bit Score: 180.17 E-value: 5.93e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 93 FETARKLGASDIHFLISESIFKVRMRIFGELQTVDEDQPALGYSLcATAILSMA--DVTETsffpQREQDARLSPQLMRK 170
Cdd:pfam00437 4 PLEALDEGASDIHVEPPERIVWIRFRVDGVLREIPFPDADALARL-ISRIKVMArlDISER----RPPQDGRLPLRIGGK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 171 IGIFgaRYSHRPTGDGLIAVMRLIPDDGDKVpTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKSTTLRSAcrVYL 250
Cdd:pfam00437 79 GVRV--RVSTLPTAGGEKLVIRLLDPSNVAL-SLDELGMTGAQDEALLEFLRQPRGNILVTGPTGSGKTTTLYAA--LGE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 251 DDNQGRHLLTIEDPLEGQILGATQTPIicdksdEDAVKLAWSRAISSAMRLDPDAIMEGEMRDLISMMSTTYAAQTGHIV 330
Cdd:pfam00437 154 LNTRDENIVTVEDPVEIQLEGINQVQL------NARAGVTFADLLRAILRQDPDRIMVGEIRDLETAEIALQAANTGHLV 227
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1003482711 331 LTTLHTNSALGIPERMITMGMNADLIcdAQLLIGMISQRLVPTL 374
Cdd:pfam00437 228 LSTLHTNSAAGALTRLQDMGVPPFEL--ASSLLLVIAQRLVRKL 269
|
|
| type_IV_pilB |
TIGR02538 |
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus ... |
7-492 |
1.48e-45 |
|
type IV-A pilus assembly ATPase PilB; This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 274186 [Multi-domain] Cd Length: 564 Bit Score: 167.89 E-value: 1.48e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 7 KDALLFISRGDTHEILIETNQrtrpdvqsnLQELLKLYPGINPKVVSLSELQEAGQDEKnrgpKERIIHLKDLADVSESE 86
Cdd:TIGR02538 107 LDDIRFATGLNVEVVIVEEDK---------LSALIEKYYGGSDSLAKELGDEDIGDLEE----LDVDAIDDEGPDDIEQD 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 87 K------------KVLSyfeTARKLGASDIHFLISESIFKVRMRIFGELQTVDEDQPALGYSLCA-TAILSMADVTETsf 153
Cdd:TIGR02538 174 AvdddapivkfvnKILL---DAIRKGASDIHFEPYEKSYRVRFRIDGILHEVAQPPLALANRIAArIKVMSRLDIAEK-- 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 154 fpQREQDARLSPQLMRKIGI-FgaRYSHRPTGDGLIAVMRLIPDDGDKVpTFKQLGFIPEQIRLLNIMLRRPEGKIVLSG 232
Cdd:TIGR02538 249 --RIPQDGRIKLKLSKSKAIdF--RVSTLPTLFGEKVVLRILDSSAAQL-DIDKLGFEPDQKALFLEAIHKPQGMVLVTG 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 233 PTGSGKSTTLRSACRVyLDDNQgRHLLTIEDPLEGQILGATQTPIicdksdEDAVKLAWSRAISSAMRLDPDAIMEGEMR 312
Cdd:TIGR02538 324 PTGSGKTVSLYTALNI-LNTEE-VNISTAEDPVEINLPGINQVNV------NPKIGLTFAAALRSFLRQDPDIIMVGEIR 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 313 DLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITMGMNADLICDAQLLIgmISQRLVPTLCPSCRIPWETRAPELrdd 392
Cdd:TIGR02538 396 DLETAEIAIKAAQTGHLVLSTLHTNDAPETLARLVNMGIAPFNIASSVNLI--MAQRLARRLCSHCKAPEEVPAEAL--- 470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 393 erdyLERHCNKDSLcstDNIWFRNPHGCSECNhdviingrkrgeiGKGLTGRTVIAEVIEPDNRLFQIL----------- 461
Cdd:TIGR02538 471 ----LELGFTQEDL---ADLKLYGPVGCDECS-------------NTGYKGRVGIYEVMPMSEEIAELIlkggnalqiae 530
|
490 500 510
....*....|....*....|....*....|....
gi 1003482711 462 --KTRGKVAARKYWLENMK-GISRVEHLLRRINE 492
Cdd:TIGR02538 531 laQKEGMRTLRRSGLLKVKqGVTSLEEVLRVTVD 564
|
|
| PRK10436 |
PRK10436 |
hypothetical protein; Provisional |
101-461 |
4.41e-44 |
|
hypothetical protein; Provisional
Pssm-ID: 236694 Cd Length: 462 Bit Score: 162.02 E-value: 4.41e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 101 ASDIHFLISESIFKVRMRIFGELQTVDEDQPALGYSLCAT-AILSMADVTEtsffpQR-EQDARLSPQLMrkigifGARY 178
Cdd:PRK10436 100 ASDIHFEPAQNHYRIRLRIDGVLHPLPDPSPELGAALTARlKVLGNLDIAE-----RRlPQDGQFTVELA------GNAY 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 179 SHR----PTGDGLIAVMRLIPDDGdKVPTFKQLGFIPEQIRLLNIMLRRPEGKIVLSGPTGSGKSTTLRSACRvYLDDNQ 254
Cdd:PRK10436 169 SFRiatlPCRGGEKVVLRLLQQVQ-QALDLETLGMTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQ-TLNTAQ 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 255 gRHLLTIEDPLEGQILGATQTPIIcDKSDedavkLAWSRAISSAMRLDPDAIMEGEMRDL----ISMMsttyAAQTGHIV 330
Cdd:PRK10436 247 -INICSVEDPVEIPLAGINQTQIH-PKAG-----LTFQRVLRALLRQDPDVIMVGEIRDGetaeIAIK----AAQTGHLV 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 331 LTTLHTNSALGIPERMITMGMNADLICDAQLLIgmISQRLVPTLCPSCRIPWEtrapelrdderdylerhcnkDSLCSTD 410
Cdd:PRK10436 316 LSTLHTNSTSETLVRLQQMGIARWMLASALKLV--IAQRLVRKLCPHCRQQAS--------------------EPIHLPP 373
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1003482711 411 NIWFR-----NPHGCSECNHdviingrkrgeigkGLTGRTVIAEVIEPDNRLFQIL 461
Cdd:PRK10436 374 NIWPGplphwQAVGCEHCYH--------------GYYGRTALFEVLPITPVLQQAI 415
|
|
| pilT_fam |
TIGR01420 |
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to ... |
96-373 |
4.24e-43 |
|
pilus retraction protein PilT; This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. [Cell envelope, Surface structures, Cellular processes, Chemotaxis and motility]
Pssm-ID: 273613 Cd Length: 343 Bit Score: 156.33 E-value: 4.24e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 96 ARKLGASDIHFLISesiFKVRMRIFGELQTVDEdqPALGYSLCATAILSMADVTETSFFP-QREQDARLS-PQLMR-KIG 172
Cdd:TIGR01420 9 AVKLGASDIHLTAG---APPAMRIDGDLVRIEF--EPLTPEDTQKLAREILSEKQREEFEeNGELDFSFSlPGVGRfRVN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 173 IFGARyshrptgDGLIAVMRLIPDdgdKVPTFKQLGFIPeqirLLNIMLRRPEGKIVLSGPTGSGKSTTLRSACRvYLDD 252
Cdd:TIGR01420 84 AFYQR-------GGVALVLRLIPS---KIPTFEELGLPP----VLRELAERPRGLILVTGPTGSGKSTTLASMID-YINK 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 253 NQGRHLLTIEDPLEgqILGATQTPIICDKS-DEDAvkLAWSRAISSAMRLDPDAIMEGEMRDLISMMSTTYAAQTGHIVL 331
Cdd:TIGR01420 149 NKAYHIITIEDPIE--YVHTNKRSLINQREvGEDT--LSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVF 224
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1003482711 332 TTLHTNSALGIPERMITM-------GMNADLicdAQLLIGMISQRLVPT 373
Cdd:TIGR01420 225 GTLHTNSAAQTIERIIDVfpaeeqeQIRTQL---AESLVAIISQRLLPK 270
|
|
| PilT |
COG2805 |
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular ... |
93-373 |
3.00e-41 |
|
Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures];
Pssm-ID: 442056 Cd Length: 342 Bit Score: 151.01 E-value: 3.00e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 93 FETARKLGASDIHFLISEsifKVRMRIFGELQTVDEdqPALGYSLCATAILSMADVTETSFFpQREQDARLSpqlmrkIG 172
Cdd:COG2805 9 LKLAVEQGASDLHLTVGS---PPMLRIDGELVPLDD--PPLTPEDLEALLKEILTEEQRERL-EEEGELDFS------YS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 173 IFG-AR-----YSHRptgDGLIAVMRLIPDdgdKVPTFKQLGfIPEQIRLLnimLRRPEGKIVLSGPTGSGKSTTLrsAC 246
Cdd:COG2805 77 LPGlGRfrvniFRQR---GGVAAVLRLIPS---EIPTLEELG-LPPVLKEL---AELPRGLVLVTGPTGSGKSTTL--AA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 247 RV-YLDDNQGRHLLTIEDPLE-------GQIlgaTQTPIICD-KSDEDAVKlawsraisSAMRLDPDAIMEGEMRDLISM 317
Cdd:COG2805 145 MIdYINETRAKHIITIEDPIEfvhkhkkSLI---NQREVGRDtPSFANALR--------AALREDPDVILVGEMRDLETI 213
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1003482711 318 MSTTYAAQTGHIVLTTLHTNSALGIPERMITM-------GMNADLicdAQLLIGMISQRLVPT 373
Cdd:COG2805 214 EAALTAAETGHLVFATLHTNSAAQTIDRIIDVfppeeqaQIRSQL---AESLRGVISQRLLPR 273
|
|
| ATPase_ComGA |
NF041000 |
competence type IV pilus ATPase ComGA; |
93-373 |
2.03e-39 |
|
competence type IV pilus ATPase ComGA;
Pssm-ID: 468930 [Multi-domain] Cd Length: 265 Bit Score: 144.13 E-value: 2.03e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 93 FETARKLGASDIHFLISESIFKVRMRIFGELQTVDEdqpaLGYSLCATAI-----LSMADVTET------SF---FPQRE 158
Cdd:NF041000 4 IEEAIELRASDIHFLPREDGYQIKFRIGGGLIPYRE----LSLEEGQRLIsyfkfLAGMDIGEKrrpqsgAFtyeLNEQQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 159 QDARLSpqlmrKIGIFGARYShrptgdgliAVMRLIPDDGDKVPTFkqlgFIPEQIRLLNIMLRRPEGKIVLSGPTGSGK 238
Cdd:NF041000 80 ISLRLS-----TVGDFLGRES---------LVIRLLYQLEQIKPQL----FFPEQFQLLKQLLQRRSGLILFSGPTGSGK 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 239 STTLRSACRvylDDNQGRHLLTIEDPLEGQILGATQTPIicdksDEDAvKLAWSRAISSAMRLDPDAIMEGEMRDlismm 318
Cdd:NF041000 142 TTTMYSLAR---KLALNKQVITIEDPVEIKEPNFLQLQV-----NEKA-GMTYDTLLKAALRHRPDILIIGEIRD----- 207
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 319 STT-----YAAQTGHIVLTTLHTNSALGIPERMITMGMNADLIcdAQLLIGMISQRLVPT 373
Cdd:NF041000 208 AETakaaiRAALTGHLVLSTVHAKSAAGVIYRLLELGISKEEL--EQTLIGISYQRLIPT 265
|
|
| PilT |
cd01131 |
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein ... |
201-381 |
6.03e-36 |
|
Pilus retraction ATPase PilT; Pilus retraction ATPase PilT is a nucleotide-binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Pssm-ID: 410875 [Multi-domain] Cd Length: 223 Bit Score: 133.43 E-value: 6.03e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 201 VPTFKQLGFiPEQIRLLnimLRRPEGKIVLSGPTGSGKSTTLRSACRvYLDDNQGRHLLTIEDPLE------GQILgaTQ 274
Cdd:cd01131 1 IPTFEELGL-PPVLKDL---ALKPRGLVLVTGPTGSGKSTTLAAMID-YINETRSKHIITIEDPIEfvhkhkKSLI--NQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 275 TPIICDKsdedavkLAWSRAISSAMRLDPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITM--GMN 352
Cdd:cd01131 74 REVGRDT-------ESFAAALRAALREDPDVILVGEMRDLETIELALTAAETGHLVFSTLHTNSAAQTIDRIIDVfpPEQ 146
|
170 180 190
....*....|....*....|....*....|..
gi 1003482711 353 ADLICdAQL---LIGMISQRLVPTLCPSCRIP 381
Cdd:cd01131 147 QEQVR-IQLassLRGVISQRLLPKKDGGGRVA 177
|
|
| DotB_TraJ |
cd19516 |
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of ... |
225-373 |
1.27e-27 |
|
dot/icm secretion system protein DotB-like; Defect in organelle trafficking (Dot)B is part of the type IVb secretion (T4bS) system, also known as the dot/icm system, and is the main energy supplier of the secretion system. It is an ATPase, similar to the VirB11 component of the T4aS systems. This family also includes Escherichia coli IncI plasmid-encoded conjugative transfer ATPase TraJ encoded on the tra (transfer) operon.
Pssm-ID: 410924 [Multi-domain] Cd Length: 179 Bit Score: 109.00 E-value: 1.27e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 225 EGKIVLSGPTGSGKSTTLRSACRVYLD-DNQGRHLLTIEDPLEgQILG--ATQTPIICDKS-DEDAVKLAwsRAISSAMR 300
Cdd:cd19516 11 EGLVYVAGATGSGKSTLLAAIYRYILEnDPPDRKIITYEDPIE-FVYDgiKSKHSIIVQSQiPRHFKSFA--KAVREALR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 301 LDPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMITM-------GMNADLICDAQLligMISQRLVPT 373
Cdd:cd19516 88 RKPSLIGVGELRDQETISAAVEASLTGHPVYSTVHTKSVAETIRRLISLfppeerdAAAYDLLSTLRF---IIVQRLVRT 164
|
|
| PilU |
COG5008 |
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures]; |
189-373 |
1.34e-24 |
|
Type IV pilus assembly protein, ATPase PilU [Cell motility, Extracellular structures];
Pssm-ID: 444032 Cd Length: 370 Bit Score: 105.18 E-value: 1.34e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 189 AVMRLIPDDgdkVPTFKQLGfIPEQIRLLnIMLRRpeGKIVLSGPTGSGKSTTL------RSAcrvylddNQGRHLLTIE 262
Cdd:COG5008 94 MVLRRIETE---IPTLDELG-LPPVLKDL-IMEKR--GLVLFVGATGSGKSTTLaamidhRNE-------NSSGHILTIE 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 263 DPLE------GQILgaTQTPIICD-KSDEDAVKlawsraisSAMRLDPDAIMEGEMRDLISMmstTYA---AQTGHIVLT 332
Cdd:COG5008 160 DPIEfvhkhkKSIV--TQREVGVDtESYEVALK--------NALRQAPDVILIGEIRDRETM---EHAiafAETGHLCLA 226
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1003482711 333 TLHTNS---ALgipERMI---------TMGMnaDLicdAQLLIGMISQRLVPT 373
Cdd:COG5008 227 TLHANNanqAL---DRIInffpeerrpQLLM--DL---SLNLRAIVSQRLVPT 271
|
|
| plasmid_TraJ |
TIGR02525 |
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated ... |
191-373 |
1.72e-21 |
|
plasmid transfer ATPase TraJ; Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). [Mobile and extrachromosomal element functions, Plasmid functions]
Pssm-ID: 131577 [Multi-domain] Cd Length: 372 Bit Score: 96.03 E-value: 1.72e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 191 MRLIPDDgdkVPTFKQLGFIPEqirLLNIMLRRpEGKIVLSGPTGSGKSTTLRSACRVYLDDNQGRHLLTIEDPLE---- 266
Cdd:TIGR02525 122 LRVIPSD---IPDLKQMGIEPD---LFNSLLPA-AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEyilg 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 267 --GQILGATQTPIICDKSdedavklAWSRAISSAMRLDPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPE 344
Cdd:TIGR02525 195 spDDLLPPAQSQIGRDVD-------SFANGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKSPGEAIS 267
|
170 180 190
....*....|....*....|....*....|....*.
gi 1003482711 345 RMITM-------GMNADLIcdaQLLIGMISQRLVPT 373
Cdd:TIGR02525 268 RCLQMyppemreAAAFDLL---SILQYIIVQRLLRT 300
|
|
| VirB11-like_ATPase |
cd01130 |
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ... |
228-368 |
2.37e-16 |
|
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Pssm-ID: 410874 [Multi-domain] Cd Length: 177 Bit Score: 76.81 E-value: 2.37e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 228 IVLSGPTGSGKSTTLRSACRvYLDDNQgrHLLTIEDPLEGQILGATQTPIICDKSDEDAVKLAWSRAISSAMRLDPDAIM 307
Cdd:cd01130 15 ILISGGTGSGKTTLLNALLS-FIPPDE--RIVTIEDTRELQLPHPNVVHLLTRPGGGEKGEVTMADLLKAALRMRPDRII 91
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1003482711 308 EGEMR-----DLISmmsttyAAQTGHI-VLTTLHTNSALGIPERMITMGMNADLICDAQLLIGMISQ 368
Cdd:cd01130 92 VGEVRggeayDMLQ------AMNTGHPgSITTIHANSAEDAIDRLATLVLEAGVNLDEEALRRLIAS 152
|
|
| type_II_IV_secretion_ATPases |
cd19477 |
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP ... |
220-374 |
4.13e-14 |
|
type II/type IV hexameric secretion ATPases; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410885 [Multi-domain] Cd Length: 168 Bit Score: 70.12 E-value: 4.13e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 220 MLRRPeGKIVLSGPTGSGKSTTLRSACRVYlddNQGRHLLTIEDPLEGQIL---GATQTPIicdksdedAVKLAWSRAIS 296
Cdd:cd19477 6 GIAIG-KNVIVCGGTGSGKTTYIKSILEFI---PKEERIISIEDTEEIVFKhhkNYTQLFF--------GGNITSADCLK 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 297 SAMRLDPDAIMEGEMRDlismmSTTY----AAQTGH-IVLTTLHTNSALGIPERMITMGMNADLICDAQ----------L 361
Cdd:cd19477 74 SCLRQRPDRIILGELRS-----SEAYdfynVLCSGHkGTLTTLHAGSSEEAFIRLAN*SSSNSAARNIKfesliegfkdL 148
|
170
....*....|...
gi 1003482711 362 LIGMISQRLVPTL 374
Cdd:cd19477 149 IDGIVHINHHKQC 161
|
|
| CpaF |
COG4962 |
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ... |
206-354 |
1.67e-10 |
|
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 443988 [Multi-domain] Cd Length: 386 Bit Score: 62.88 E-value: 1.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 206 QLGFIPEQI-RLLNIMLRRpeGK-IVLSGPTGSGKSTTLRSACRvYLDDNQgrHLLTIEDPLEGQIlgatqtpiicdkSD 283
Cdd:COG4962 163 ALGSLTPEMaEFLRAAVRA--RLnILVSGGTGSGKTTLLNALSG-FIPPDE--RIVTIEDAAELQL------------QH 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 284 EDAVKLAwSR--------AIS------SAMRLDPDAIMEGEMR-----DLISMMsttyaaQTGH-IVLTTLHTNSALGIP 343
Cdd:COG4962 226 PHVVRLE-TRppnvegagEVTlrdlvrNALRMRPDRIIVGEVRgaealDMLQAM------NTGHdGSMSTLHANSARDAL 298
|
170
....*....|.
gi 1003482711 344 ERMITMGMNAD 354
Cdd:COG4962 299 ARLETLALMAG 309
|
|
| PRK13833 |
PRK13833 |
conjugal transfer protein TrbB; Provisional |
228-346 |
5.84e-07 |
|
conjugal transfer protein TrbB; Provisional
Pssm-ID: 172360 [Multi-domain] Cd Length: 323 Bit Score: 51.34 E-value: 5.84e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 228 IVLSGPTGSGKSTTLRSACRVYLDDNQGRHLLTIEDPLEGQIlgATQTPIICDKSDedAVKLAwsRAISSAMRLDPDAIM 307
Cdd:PRK13833 147 IVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQC--AAENAVALHTSD--TVDMA--RLLKSTMRLRPDRII 220
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1003482711 308 EGEMRDLiSMMSTTYAAQTGHI-VLTTLHTNSALGIPERM 346
Cdd:PRK13833 221 VGEVRDG-AALTLLKAWNTGHPgGVTTIHSNTAMSALRRL 259
|
|
| VirB11 |
COG0630 |
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ... |
228-357 |
9.95e-06 |
|
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440395 [Multi-domain] Cd Length: 462 Bit Score: 48.15 E-value: 9.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 228 IVLSGPTGSGKSTTLRsACRVYLDDNqgRHLLTIED------PLEGQILGATQTPIICDKSD---EDAVKlawsraisSA 298
Cdd:COG0630 293 VLVAGGTASGKTTLLN-ALLSFIPPD--AKIVTIEDtrelnlPHENWISLVTRESFGGEEGDvtmFDLLK--------AA 361
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1003482711 299 MRLDPDAIMEGEMRD-----LISmmsttyAAQTGHIVLTTLH-----------TNSALGIPERMITmgmNADLIC 357
Cdd:COG0630 362 LRQRPDYIVVGEVRGeeaytLFQ------AMATGHGVLSTFHadsvesainrlTSPPINVPRTLLQ---ALDLVV 427
|
|
| PRK13851 |
PRK13851 |
type IV secretion system protein VirB11; Provisional |
228-313 |
3.48e-05 |
|
type IV secretion system protein VirB11; Provisional
Pssm-ID: 172375 Cd Length: 344 Bit Score: 46.04 E-value: 3.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 228 IVLSGPTGSGKST---TLRSACrvyldDNQGRhLLTIEDPLEGQILGATQTPIICDKSDEDAVKLAWSRAISSAMRLDPD 304
Cdd:PRK13851 165 MLLCGPTGSGKTTmskTLISAI-----PPQER-LITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPD 238
|
....*....
gi 1003482711 305 AIMEGEMRD 313
Cdd:PRK13851 239 RILLGEMRD 247
|
|
| PRK13900 |
PRK13900 |
type IV secretion system ATPase VirB11; Provisional |
191-355 |
1.52e-04 |
|
type IV secretion system ATPase VirB11; Provisional
Pssm-ID: 184381 Cd Length: 332 Bit Score: 43.98 E-value: 1.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 191 MRLIPDDGDKVPTFKQL---GFIPEQIRLLNIMLRRPEGK------------IVLSGPTGSGKSTTLRSACRVYLDDNQg 255
Cdd:PRK13900 111 MQLTLDDYEKMGAFDETateSLVDEDDVILNELLAEKKIKeflehaviskknIIISGGTSTGKTTFTNAALREIPAIER- 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 256 rhLLTIEDPLEGQILG-ATQTPIICDKSDEDAVKLAWSRAISSAMRLDPDAIMEGEMRDlISMMSTTYAAQTGHI-VLTT 333
Cdd:PRK13900 190 --LITVEDAREIVLSNhPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRIIVGELRG-AEAFSFLRAINTGHPgSIST 266
|
170 180
....*....|....*....|..
gi 1003482711 334 LHTNSALGIPERMITMGMNADL 355
Cdd:PRK13900 267 LHADSPAMAIEQLKLMVMQAGL 288
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
226-348 |
3.30e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 38.12 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1003482711 226 GKIVLSGPTGSGKSTTLRSACRVYLDDNQGRHLLTIEDPLEGQILGATQTPIICDK---SDEDAVKLAWSRAISSAMRL- 301
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKasgSGELRLRLALALARKLKPDVl 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1003482711 302 ---------DPDAIMEGEMRDLISMMSTTYAAQTGHIVLTTLHTNSALGIPERMIT 348
Cdd:smart00382 83 ildeitsllDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRF 138
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
216-270 |
7.04e-03 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 38.32 E-value: 7.04e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1003482711 216 LLNIMLRRPEGKIV-LSGPTGSGKSTTLRSACRVylddnqgrHLLTIEDPLEGQIL 270
Cdd:cd03260 16 LKDISLDIPKGEITaLIGPSGCGKSTLLRLLNRL--------NDLIPGAPDEGEVL 63
|
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