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Conserved domains on  [gi|937934606|dbj|BAT09521|]
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Os09g0571000 [Oryza sativa Japonica Group]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SOK super family cl05585
Protein SOSEKI, plant; This entry represents a group of plant proteins, including protein ...
38-428 7.31e-71

Protein SOSEKI, plant; This entry represents a group of plant proteins, including protein SOSEKI1-5 from Arabidopsis thaliana and Physcomitrium patens. SOK1-5 integrate apical-basal and radial organizmal axes to localize to polar cell edges and contain a DIX oligomerization domain that resembles that in the animal Dishevelled polarity regulator.


The actual alignment was detected with superfamily member pfam06136:

Pssm-ID: 461836  Cd Length: 366  Bit Score: 229.26  E-value: 7.31e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606   38 VAVVYYLCRSRQggLEHPHLMEVEVGDGEeqvhvQLRLRDVTRRLDALRGKGMAAMYSWSCKRSYRGGYVWHDLSHpDDL 117
Cdd:pfam06136   1 VPVVYYLCRNGQ--LEHPHFMEVPLSSPD-----GLYLRDVIDRLNVLRGKGMASMYSWSCKRSYKNGFVWHDLSE-DDL 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606  118 LLPTGPHDYVLKASllhlhHLIDPPPRHHplitstsSSAHHSLPPHAAAAAHVSLVSSSSTDANANSVVVGddqcTSSCR 197
Cdd:pfam06136  73 ILPAHGNEYVLKGS-----ELLDGSPSDR-------VSPNSNVKTQNPLPPSSRSASEASSSSSSSSVVVS----GSSDN 136
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606  198 TQPHssssssssssssaSSSGSSSSHNNNSKEKEDEKQVVGEArrpaaavvVASAATQTDDDSSFTVTGSIAAPSAQKQG 277
Cdd:pfam06136 137 ESPE-------------SSARRRQSSERSSPDLAEYRVYKPEG--------AADASTQTDDRRRRSRTTRETCSRGVSTE 195
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606  278 AAGGRGSSSSSSRS------------------LESLIMAEYSGFRSMLEDDEEESAGGADnssrrrrscsmsiYRVKPAN 339
Cdd:pfam06136 196 DESEEKENEVNESTelsreeisppsspgspetLESLIRADGSKRNASFRILEEEDRMPTG-------------PKLKASN 262
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606  340 LLMRLIACGcgsSIPI-------------PAAAAAAAKQQLQQVESlpLSPVLSPLSHLVNKQQLPH----EQDRFSGGT 402
Cdd:pfam06136 263 VLMQLISCG---SISVkdhhgfgliptykARLPRFSHSKFPSPLFS--TSMMLGELDCLSENPRFIGlrleDKEYFSGSL 337
                         410       420
                  ....*....|....*....|....*.
gi 937934606  403 ISTSNAnaagKLKVADDNaPPLVQSQ 428
Cdd:pfam06136 338 IETKKQ----KEVPAEGI-SSLKRSS 358
 
Name Accession Description Interval E-value
SOK pfam06136
Protein SOSEKI, plant; This entry represents a group of plant proteins, including protein ...
38-428 7.31e-71

Protein SOSEKI, plant; This entry represents a group of plant proteins, including protein SOSEKI1-5 from Arabidopsis thaliana and Physcomitrium patens. SOK1-5 integrate apical-basal and radial organizmal axes to localize to polar cell edges and contain a DIX oligomerization domain that resembles that in the animal Dishevelled polarity regulator.


Pssm-ID: 461836  Cd Length: 366  Bit Score: 229.26  E-value: 7.31e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606   38 VAVVYYLCRSRQggLEHPHLMEVEVGDGEeqvhvQLRLRDVTRRLDALRGKGMAAMYSWSCKRSYRGGYVWHDLSHpDDL 117
Cdd:pfam06136   1 VPVVYYLCRNGQ--LEHPHFMEVPLSSPD-----GLYLRDVIDRLNVLRGKGMASMYSWSCKRSYKNGFVWHDLSE-DDL 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606  118 LLPTGPHDYVLKASllhlhHLIDPPPRHHplitstsSSAHHSLPPHAAAAAHVSLVSSSSTDANANSVVVGddqcTSSCR 197
Cdd:pfam06136  73 ILPAHGNEYVLKGS-----ELLDGSPSDR-------VSPNSNVKTQNPLPPSSRSASEASSSSSSSSVVVS----GSSDN 136
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606  198 TQPHssssssssssssaSSSGSSSSHNNNSKEKEDEKQVVGEArrpaaavvVASAATQTDDDSSFTVTGSIAAPSAQKQG 277
Cdd:pfam06136 137 ESPE-------------SSARRRQSSERSSPDLAEYRVYKPEG--------AADASTQTDDRRRRSRTTRETCSRGVSTE 195
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606  278 AAGGRGSSSSSSRS------------------LESLIMAEYSGFRSMLEDDEEESAGGADnssrrrrscsmsiYRVKPAN 339
Cdd:pfam06136 196 DESEEKENEVNESTelsreeisppsspgspetLESLIRADGSKRNASFRILEEEDRMPTG-------------PKLKASN 262
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606  340 LLMRLIACGcgsSIPI-------------PAAAAAAAKQQLQQVESlpLSPVLSPLSHLVNKQQLPH----EQDRFSGGT 402
Cdd:pfam06136 263 VLMQLISCG---SISVkdhhgfgliptykARLPRFSHSKFPSPLFS--TSMMLGELDCLSENPRFIGlrleDKEYFSGSL 337
                         410       420
                  ....*....|....*....|....*.
gi 937934606  403 ISTSNAnaagKLKVADDNaPPLVQSQ 428
Cdd:pfam06136 338 IETKKQ----KEVPAEGI-SSLKRSS 358
 
Name Accession Description Interval E-value
SOK pfam06136
Protein SOSEKI, plant; This entry represents a group of plant proteins, including protein ...
38-428 7.31e-71

Protein SOSEKI, plant; This entry represents a group of plant proteins, including protein SOSEKI1-5 from Arabidopsis thaliana and Physcomitrium patens. SOK1-5 integrate apical-basal and radial organizmal axes to localize to polar cell edges and contain a DIX oligomerization domain that resembles that in the animal Dishevelled polarity regulator.


Pssm-ID: 461836  Cd Length: 366  Bit Score: 229.26  E-value: 7.31e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606   38 VAVVYYLCRSRQggLEHPHLMEVEVGDGEeqvhvQLRLRDVTRRLDALRGKGMAAMYSWSCKRSYRGGYVWHDLSHpDDL 117
Cdd:pfam06136   1 VPVVYYLCRNGQ--LEHPHFMEVPLSSPD-----GLYLRDVIDRLNVLRGKGMASMYSWSCKRSYKNGFVWHDLSE-DDL 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606  118 LLPTGPHDYVLKASllhlhHLIDPPPRHHplitstsSSAHHSLPPHAAAAAHVSLVSSSSTDANANSVVVGddqcTSSCR 197
Cdd:pfam06136  73 ILPAHGNEYVLKGS-----ELLDGSPSDR-------VSPNSNVKTQNPLPPSSRSASEASSSSSSSSVVVS----GSSDN 136
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606  198 TQPHssssssssssssaSSSGSSSSHNNNSKEKEDEKQVVGEArrpaaavvVASAATQTDDDSSFTVTGSIAAPSAQKQG 277
Cdd:pfam06136 137 ESPE-------------SSARRRQSSERSSPDLAEYRVYKPEG--------AADASTQTDDRRRRSRTTRETCSRGVSTE 195
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606  278 AAGGRGSSSSSSRS------------------LESLIMAEYSGFRSMLEDDEEESAGGADnssrrrrscsmsiYRVKPAN 339
Cdd:pfam06136 196 DESEEKENEVNESTelsreeisppsspgspetLESLIRADGSKRNASFRILEEEDRMPTG-------------PKLKASN 262
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937934606  340 LLMRLIACGcgsSIPI-------------PAAAAAAAKQQLQQVESlpLSPVLSPLSHLVNKQQLPH----EQDRFSGGT 402
Cdd:pfam06136 263 VLMQLISCG---SISVkdhhgfgliptykARLPRFSHSKFPSPLFS--TSMMLGELDCLSENPRFIGlrleDKEYFSGSL 337
                         410       420
                  ....*....|....*....|....*.
gi 937934606  403 ISTSNAnaagKLKVADDNaPPLVQSQ 428
Cdd:pfam06136 338 IETKKQ----KEVPAEGI-SSLKRSS 358
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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