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Conserved domains on  [gi|937900501|dbj|BAS76481|]
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Os01g0977200 [Oryza sativa Japonica Group]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1000094)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10767 super family cl35946
chaperone protein DnaJ; Provisional
 322-390 8.07e-28

chaperone protein DnaJ; Provisional


The actual alignment was detected with superfamily member PRK10767:

Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 113.70  E-value: 8.07e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937900501 322 SKRkDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK10767   2 AKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQ 68
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 24-301 3.04e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 68.96  E-value: 3.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501   24 AQEGQDNDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVE 103
Cdd:TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVL 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  104 KELSQLLQAQNALESAygqfeshdfSKVLEYINKIVlvfsPNCLKAKLLKAKALLALEDYSSVISETGFILKEDEDNLDA 183
Cdd:TIGR02917 231 LALATILIEAGEFEEA---------EKHADALLKKA----PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPA 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  184 LLLRGRAYYYLADHDVASRHYQKGLRLDPEH---------SELKKAYF--GLKNLLKKTKSAEDNAA-----------KG 241
Cdd:TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAPNShqarrllasIQLRLGRVdeAIATLSPALGLDPDDPAalsllgeaylaLG 377

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  242 KLRVSAEDYKAALAMDPDHTSynVHLYLGLCKVLvkLGRGKEAISSCTEALNIDGELVDA 301
Cdd:TIGR02917 378 DFEKAAEYLAKATELDPENAA--ARTQLGISKLS--QGDPSEAIADLETAAQLDPELGRA 433
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 322-390 8.07e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 113.70  E-value: 8.07e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937900501 322 SKRkDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK10767   2 AKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQ 68
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 326-390 5.65e-27

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 110.77  E-value: 5.65e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937900501  326 DWYKILGISKTASAADIKRAYKKLALQWHPDKNVDnrEEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQ 63
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 326-389 1.11e-26

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 101.78  E-value: 1.11e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937900501  326 DWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGDEDKRVRYD 389
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGD-PEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 326-391 3.27e-24

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 97.47  E-value: 3.27e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937900501 326 DWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGDEDKRVRYDRG 391
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGD-PEAEEKFKEINEAYEVLSDPEKRAAYDRF 65
DnaJ smart00271
DnaJ molecular chaperone homology domain;
325-384 5.04e-23

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 91.53  E-value: 5.04e-23
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501   325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNREEAENMFREIAAAYEVLGDEDK 384
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 326-381 2.10e-20

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 84.13  E-value: 2.10e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 937900501 326 DWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGD 381
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
322-390 9.00e-20

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 91.03  E-value: 9.00e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937900501 322 SKRKDWYKILGISKTASAADIKRAYKKLALQWHPDKNvdNREEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:NF037946   2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRN--KAPDAAEIFAEINEAYEVLSNPEKRANYDK 68
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 24-301 3.04e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 68.96  E-value: 3.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501   24 AQEGQDNDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVE 103
Cdd:TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVL 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  104 KELSQLLQAQNALESAygqfeshdfSKVLEYINKIVlvfsPNCLKAKLLKAKALLALEDYSSVISETGFILKEDEDNLDA 183
Cdd:TIGR02917 231 LALATILIEAGEFEEA---------EKHADALLKKA----PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPA 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  184 LLLRGRAYYYLADHDVASRHYQKGLRLDPEH---------SELKKAYF--GLKNLLKKTKSAEDNAA-----------KG 241
Cdd:TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAPNShqarrllasIQLRLGRVdeAIATLSPALGLDPDDPAalsllgeaylaLG 377

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  242 KLRVSAEDYKAALAMDPDHTSynVHLYLGLCKVLvkLGRGKEAISSCTEALNIDGELVDA 301
Cdd:TIGR02917 378 DFEKAAEYLAKATELDPENAA--ARTQLGISKLS--QGDPSEAIADLETAAQLDPELGRA 433
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
59-332 1.05e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.64  E-value: 1.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  59 LEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQLLQAQNALESAygqfeshdfskvLEYINKi 138
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEA------------LADYEQ- 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 139 vlvfspnclkakllkakallaledyssvisetgfILKEDEDNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSElk 218
Cdd:COG0457   68 ----------------------------------ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE-- 111

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 219 kAYFGLKNLLkktksaednAAKGKLRVSAEDYKAALAMDPDHtsynVHLYLGLCKVLVKLGRGKEAISSCTEALNIDGEL 298
Cdd:COG0457  112 -ALYNLGLAL---------LELGRYDEAIEAYERALELDPDD----ADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177

                        250       260       270
                 ....*....|....*....|....*....|....
gi 937900501 299 VDALTQDMGIREALMRAEKQLKLSKRKDWYKILG 332
Cdd:COG0457  178 LLAAALGEAALALAAAEVLLALLLALEQALRKKL 211
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 48-132 9.36e-04

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 41.03  E-value: 9.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  48 YDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSS-------VEKELSQlLQAQNALESAY 120
Cdd:PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYralwlylAESKLDP-KQAKENLKQRY 192

                         90
                 ....*....|..
gi 937900501 121 GQFESHDFSKVL 132
Cdd:PRK11189 193 EKLDKEQWGWNI 204
 
Name Accession Description Interval E-value
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 322-390 8.07e-28

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 113.70  E-value: 8.07e-28
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937900501 322 SKRkDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK10767   2 AKR-DYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD-KEAEEKFKEIKEAYEVLSDPQKRAAYDQ 68
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 326-390 5.65e-27

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 110.77  E-value: 5.65e-27
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937900501  326 DWYKILGISKTASAADIKRAYKKLALQWHPDKNVDnrEEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:TIGR02349   1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD--KEAEEKFKEINEAYEVLSDPEKRAQYDQ 63
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 326-389 1.11e-26

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 101.78  E-value: 1.11e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937900501  326 DWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGDEDKRVRYD 389
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNPGD-PEAEEKFKEINEAYEVLSDPEKRAIYD 63
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 324-390 3.02e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 103.73  E-value: 3.02e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937900501 324 RKDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNReEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14281   2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNK-EAEEHFKEVNEAYEVLSNDDKRRRYDQ 67
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 326-391 3.27e-24

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 97.47  E-value: 3.27e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937900501 326 DWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGDEDKRVRYDRG 391
Cdd:COG0484    1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPGD-PEAEEKFKEINEAYEVLSDPEKRAAYDRF 65
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 321-390 3.68e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 103.28  E-value: 3.68e-24
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 321 LSKRkDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14301   1 MSQR-DYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN-PEAEQKFKEAAEAYEVLRDAEKRARYDR 68
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 324-390 9.21e-24

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 102.18  E-value: 9.21e-24
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937900501 324 RKDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNREEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14282   3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDR 69
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 321-390 3.47e-23

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 100.31  E-value: 3.47e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 321 LSKRKDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDnrEEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14298   1 MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE--PDAEEKFKEISEAYAVLSDAEKRAQYDR 68
DnaJ smart00271
DnaJ molecular chaperone homology domain;
325-384 5.04e-23

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 91.53  E-value: 5.04e-23
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501   325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNREEAENMFREIAAAYEVLGDEDK 384
Cdd:smart00271   1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60
PRK14280 PRK14280
molecular chaperone DnaJ;
321-390 1.08e-21

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 95.94  E-value: 1.08e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 321 LSKRkDWYKILGISKTASAADIKRAYKKLALQWHPDknVDNREEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14280   1 MAKR-DYYEVLGVSKSASKDEIKKAYRKLSKKYHPD--INKEEGADEKFKEISEAYEVLSDDQKRAQYDQ 67
PRK14295 PRK14295
molecular chaperone DnaJ;
325-394 1.53e-21

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 95.69  E-value: 1.53e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGDEDKRVRYDRGEDL 394
Cdd:PRK14295   9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD-AKAEERFKEISEAYDVLSDEKKRKEYDEARSL 77
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 324-390 3.44e-21

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 94.67  E-value: 3.44e-21
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 937900501 324 RKDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14285   2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN-KEAESIFKEATEAYEVLIDDNKRAQYDR 67
PRK14289 PRK14289
molecular chaperone DnaJ;
321-390 7.48e-21

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 93.74  E-value: 7.48e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 321 LSKRKDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNReEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14289   1 MAEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDK-EAEEKFKEAAEAYDVLSDPDKRSRYDQ 69
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 325-395 1.44e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 92.69  E-value: 1.44e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937900501 325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNREEAENMFREIAAAYEVLGDEDKRVRYDRGEDLD 395
Cdd:PRK14290   3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD 73
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 326-381 2.10e-20

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 84.13  E-value: 2.10e-20
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 937900501 326 DWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGD 381
Cdd:cd06257    1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD-PEAEEKFKEINEAYEVLSD 55
PRK14297 PRK14297
molecular chaperone DnaJ;
325-390 2.30e-20

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 92.15  E-value: 2.30e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937900501 325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNReEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14297   4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNK-EAEEKFKEINEAYQVLSDPQKKAQYDQ 68
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 326-393 2.59e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 92.21  E-value: 2.59e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937900501 326 DWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNrEEAENMFREIAAAYEVLGDEDKRVRYDR-GED 393
Cdd:PRK14284   2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD-AEAEKRFKEVSEAYEVLSDAQKRESYDRyGKD 69
PRK14293 PRK14293
molecular chaperone DnaJ;
326-392 2.96e-20

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 91.98  E-value: 2.96e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937900501 326 DWYKILGISKTASAADIKRAYKKLALQWHPDKNVDnrEEAENMFREIAAAYEVLGDEDKRVRYDR-GE 392
Cdd:PRK14293   4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKE--PGAEDRFKEINRAYEVLSDPETRARYDQfGE 69
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 325-393 3.99e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 91.65  E-value: 3.99e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937900501 325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDnrEEAENMFREIAAAYEVLGDEDKRVRYDRGED 393
Cdd:PRK14278   3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD--EEAQEKFKEISVAYEVLSDPEKRRIVDLGGD 69
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 321-390 4.97e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 91.42  E-value: 4.97e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 321 LSKRKDWYKILGISKTASAADIKRAYKKLALQWHPDknVDNREEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14283   1 MAEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPD--VSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQ 68
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 322-390 8.63e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 90.21  E-value: 8.63e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937900501 322 SKRKDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNReEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14294   1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDK-EAEELFKEAAEAYEVLSDPKKRGIYDQ 68
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
322-390 9.00e-20

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 91.03  E-value: 9.00e-20
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 937900501 322 SKRKDWYKILGISKTASAADIKRAYKKLALQWHPDKNvdNREEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:NF037946   2 EEKRDYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRN--KAPDAAEIFAEINEAYEVLSNPEKRANYDK 68
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 321-390 9.47e-20

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 90.63  E-value: 9.47e-20
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 321 LSKRKDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNReEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14277   1 MAAKKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDK-EAEQKFKEINEAYEILSDPQKRAQYDQ 69
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
322-391 1.05e-19

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 83.23  E-value: 1.05e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 322 SKRKDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNREEAENMFREIAAAYEVLGDEDKRVRYDRG 391
Cdd:COG2214    2 PDLKDHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGELKALAEELFQRLNEAYEVLSDPERRAEYDRE 71
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 325-393 2.44e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 89.30  E-value: 2.44e-19
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNvdNREEAENMFREIAAAYEVLGDEDKRVRYDR-GED 393
Cdd:PRK14300   3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTT--DAKDAEKKFKEINAAYDVLKDEQKRAAYDRfGHD 70
PRK14279 PRK14279
molecular chaperone DnaJ;
325-389 1.33e-18

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 87.10  E-value: 1.33e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937900501 325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNReEAENMFREIAAAYEVLGDEDKRVRYD 389
Cdd:PRK14279   9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDP-AAEERFKAVSEAHDVLSDPAKRKEYD 72
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 325-390 3.81e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 84.61  E-value: 3.81e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937900501 325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDnrEEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14299   4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS--PGAEEKFKEINEAYTVLSDPEKRRIYDT 67
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 326-390 6.12e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 84.94  E-value: 6.12e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937900501 326 DWYKILGISKTASAADIKRAYKKLALQWHPDKNVDnrEEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14292   3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE--KGAAEKFAQINEAYAVLSDAEKRAHYDR 65
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 324-389 6.84e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 84.82  E-value: 6.84e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937900501 324 RKDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDnrEEAENMFREIAAAYEVLGDEDKRVRYD 389
Cdd:PRK14291   2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN--PEAEEKFKEINEAYQVLSDPEKRKLYD 65
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 325-389 1.68e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 83.60  E-value: 1.68e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937900501 325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDnrEEAENMFREIAAAYEVLGDEDKRVRYD 389
Cdd:PRK14276   4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKE--PGAEEKYKEVQEAYETLSDPQKRAAYD 66
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 325-390 3.62e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 79.65  E-value: 3.62e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937900501 325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDNReEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14286   4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNK-ESEEKFKEATEAYEILRDPKKRQAYDQ 68
PRK10266 PRK10266
curved DNA-binding protein;
325-390 2.16e-15

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 76.40  E-value: 2.16e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937900501 325 KDWYKILGISKTASAADIKRAYKKLALQWHPDknVDNREEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK10266   4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPD--VSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ 67
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 323-390 5.27e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 76.14  E-value: 5.27e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937900501 323 KRKDWYKILGISKTASAADIKRAYKKLALQWHPDKNvdNREEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14296   2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLN--KSPDAHDKMVEINEAADVLLDKDKRKQYDQ 67
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 325-393 7.29e-15

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 76.01  E-value: 7.29e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNVDnreeaENMFREIAAAYEVLGDEDKRVRYDR-GED 393
Cdd:PTZ00037  28 EKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD-----PEKFKEISRAYEVLSDPEKRKIYDEyGEE 92
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 321-390 1.01e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 75.43  E-value: 1.01e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 321 LSKRkDWYKILGISKTASAADIKRAYKKLALQWHPDknVDNREEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14287   1 MSKR-DYYEVLGVDRNASVDEVKKAYRKLARKYHPD--VNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQ 67
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 24-301 3.04e-12

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 68.96  E-value: 3.04e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501   24 AQEGQDNDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVE 103
Cdd:TIGR02917 151 ALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVL 230

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  104 KELSQLLQAQNALESAygqfeshdfSKVLEYINKIVlvfsPNCLKAKLLKAKALLALEDYSSVISETGFILKEDEDNLDA 183
Cdd:TIGR02917 231 LALATILIEAGEFEEA---------EKHADALLKKA----PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPA 297

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  184 LLLRGRAYYYLADHDVASRHYQKGLRLDPEH---------SELKKAYF--GLKNLLKKTKSAEDNAA-----------KG 241
Cdd:TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAPNShqarrllasIQLRLGRVdeAIATLSPALGLDPDDPAalsllgeaylaLG 377

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  242 KLRVSAEDYKAALAMDPDHTSynVHLYLGLCKVLvkLGRGKEAISSCTEALNIDGELVDA 301
Cdd:TIGR02917 378 DFEKAAEYLAKATELDPENAA--ARTQLGISKLS--QGDPSEAIADLETAAQLDPELGRA 433
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
59-332 1.05e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.64  E-value: 1.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  59 LEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQLLQAQNALESAygqfeshdfskvLEYINKi 138
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEA------------LADYEQ- 67

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 139 vlvfspnclkakllkakallaledyssvisetgfILKEDEDNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSElk 218
Cdd:COG0457   68 ----------------------------------ALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAE-- 111

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 219 kAYFGLKNLLkktksaednAAKGKLRVSAEDYKAALAMDPDHtsynVHLYLGLCKVLVKLGRGKEAISSCTEALNIDGEL 298
Cdd:COG0457  112 -ALYNLGLAL---------LELGRYDEAIEAYERALELDPDD----ADALYNLGIALEKLGRYEEALELLEKLEAAALAA 177

                        250       260       270
                 ....*....|....*....|....*....|....
gi 937900501 299 VDALTQDMGIREALMRAEKQLKLSKRKDWYKILG 332
Cdd:COG0457  178 LLAAALGEAALALAAAEVLLALLLALEQALRKKL 211
PRK14288 PRK14288
molecular chaperone DnaJ;
327-390 3.06e-11

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 64.71  E-value: 3.06e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937900501 327 WYKILGISKTASAADIKRAYKKLALQWHPDKNVDNReEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PRK14288   5 YYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDK-EAEEKFKLINEAYGVLSDEKKRALYDR 67
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 173-367 3.59e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.01  E-value: 3.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 173 ILKEDEDNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSElkkAYFGLKNLLKKTKSAEDnaakgklrvSAEDYKA 252
Cdd:COG3914  104 ALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAE---AYLNLGEALRRLGRLEE---------AIAALRR 171

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 253 ALAMDPDHtsynVHLYLGLCKVLVKLGRGKEAISSCTEALNIDGELVDALT------QDMGIREALMRAEKQLKLSKRKD 326
Cdd:COG3914  172 ALELDPDN----AEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSnllfalRQACDWEVYDRFEELLAALARGP 247

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 937900501 327 WYKILGI---SKTASAADIKRAYKKLAlQWHPDKNVDNREEAEN 367
Cdd:COG3914  248 SELSPFAllyLPDDDPAELLALARAWA-QLVAAAAAPELPPPPN 290
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 46-320 4.97e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 63.21  E-value: 4.97e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  46 RKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQLLQAQNALESAYGQFES 125
Cdd:COG2956   22 GQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEK 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 126 hdfskvleyinkiVLVFSPNCLKAKLLKAKALLALEDYSSVISETGFILKEDEDNLDALLLRGRAYYYLADHDVASRHYQ 205
Cdd:COG2956  102 -------------LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 206 KGLRLDPEHSElkkAYFGLKNLLkktksaednAAKGKLRVSAEDYKAALAMDPDHtsynVHLYLGLCKVLVKLGRGKEAI 285
Cdd:COG2956  169 KALKLDPDCAR---ALLLLAELY---------LEQGDYEEAIAALERALEQDPDY----LPALPRLAELYEKLGDPEEAL 232

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 937900501 286 SSCTEALNIDGE------LVDALTQDMGIREALMRAEKQLK 320
Cdd:COG2956  233 ELLRKALELDPSddlllaLADLLERKEGLEAALALLERQLR 273
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 35-217 1.92e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.70  E-value: 1.92e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  35 LFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQLLQAQn 114
Cdd:COG3914   81 LELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL- 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 115 alesaygqfesHDFSKVLEYINKivlvfspnclkakllkakallaledyssvisetgfILKEDEDNLDALLLRGRAYYYL 194
Cdd:COG3914  160 -----------GRLEEAIAALRR-----------------------------------ALELDPDNAEALNNLGNALQDL 193

                        170       180
                 ....*....|....*....|...
gi 937900501 195 ADHDVASRHYQKGLRLDPEHSEL 217
Cdd:COG3914  194 GRLEEAIAAYRRALELDPDNADA 216
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
174-396 1.96e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 60.79  E-value: 1.96e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 174 LKEDEDNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSElkkAYFGLKNLLkktksaednAAKGKLRVSAEDYKAA 253
Cdd:COG0457   35 LELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAE---ALNNLGLAL---------QALGRYEEALEDYDKA 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 254 LAMDPDHtsYNVHLYLGLckVLVKLGRGKEAISSCTEALNIDGELVDALTQDMGIREALMRAEKQLKLSKRKDWYKILGI 333
Cdd:COG0457  103 LELDPDD--AEALYNLGL--ALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAAL 178

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 937900501 334 SKTASAADIKRAYKKLALQWHPDKNVDNREEAENMFREIAAAYEVLGDEDKRVRYDRGEDLDE 396
Cdd:COG0457  179 LAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALY 241
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 183-321 3.05e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.32  E-value: 3.05e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 183 ALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSElkkAYFGLKNLLkktksaednAAKGKLRVSAEDYKAALAMDPDHts 262
Cdd:COG3914   80 LLELAALLLQALGRYEEALALYRRALALNPDNAE---ALFNLGNLL---------LALGRLEEALAALRRALALNPDF-- 145

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937900501 263 ynVHLYLGLCKVLVKLGRGKEAISSCTEALNIDGELVDALTQ------DMG-IREALMRAEKQLKL 321
Cdd:COG3914  146 --AEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNlgnalqDLGrLEEAIAAYRRALEL 209
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
326-382 1.90e-09

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 54.03  E-value: 1.90e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 937900501 326 DWYKILGISKTASAADIKRAYKKLALQWHPDKNVDN-----REEAENMFREIAAAYEVLGDE 382
Cdd:COG1076    5 DAFELLGLPPDADDAELKRAYRKLQREHHPDRLAAGlpeeeQRLALQKAAAINEAYETLKDP 66
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
30-255 2.72e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.32  E-value: 2.72e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  30 NDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQL 109
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 110 LQAQNALESAygqfeshdfskvLEYINKiVLVFSPNCLKAKLLKAKALLALEDYSSVISETGFILKEDEDNLDALLLRGR 189
Cdd:COG0457   86 LQALGRYEEA------------LEDYDK-ALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 937900501 190 AYYYLADHDVASRHYQKGLRLDPEHSELKKAYFGLKNLLKKTKSAEDNAAKGKLRVSAEDYKAALA 255
Cdd:COG0457  153 ALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAA 218
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 174-315 3.01e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.01  E-value: 3.01e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 174 LKEDEDNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSELKKAYfglknllkktksAEDNAAKGKLRVSAEDYKAA 253
Cdd:COG4235   10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL------------AEALLAAGDTEEAEELLERA 77

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 937900501 254 LAMDPDHTsyNVHLYLGLckVLVKLGRGKEAISSCTEALnidgELVDALTQDMGIREALMRA 315
Cdd:COG4235   78 LALDPDNP--EALYLLGL--AAFQQGDYAEAIAAWQKLL----ALLPADAPARLLEASIAEA 131
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 173-297 8.58e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.04  E-value: 8.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 173 ILKEDEDNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSElkkAYFGLKNLLkktksaednAAKGKLRVSAEDYKA 252
Cdd:COG4783   30 ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPE---ARLNLGLAL---------LKAGDYDEALALLEK 97

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 937900501 253 ALAMDPDHtsYNVHLYLGlcKVLVKLGRGKEAISSCTEALNIDGE 297
Cdd:COG4783   98 ALKLDPEH--PEAYLRLA--RAYRALGRPDEAIAALEKALELDPD 138
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 33-214 1.17e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.66  E-value: 1.17e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  33 STLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQLLQA 112
Cdd:COG4783    5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 113 QNALESAYGQFEShdfskvleyinkivlvfspnclkakllkakallaledyssvisetgfILKEDEDNLDALLLRGRAYY 192
Cdd:COG4783   85 AGDYDEALALLEK-----------------------------------------------ALKLDPEHPEAYLRLARAYR 117

                        170       180
                 ....*....|....*....|..
gi 937900501 193 YLADHDVASRHYQKGLRLDPEH 214
Cdd:COG4783  118 ALGRPDEAIAALEKALELDPDD 139
djlA PRK09430
co-chaperone DjlA;
325-379 1.19e-08

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 55.97  E-value: 1.19e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 937900501 325 KDWYKILGISKTASAADIKRAYKKLALQWHPDKNV------DNREEAENMFREIAAAYEVL 379
Cdd:PRK09430 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVakglppEMMEMAKEKAQEIQAAYELI 260
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 24-124 7.26e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 54.61  E-value: 7.26e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  24 AQEGQDNDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVE 103
Cdd:COG3914  104 ALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEAL 183

                         90       100
                 ....*....|....*....|.
gi 937900501 104 KELSQLLQAQNALESAYGQFE 124
Cdd:COG3914  184 NNLGNALQDLGRLEEAIAAYR 204
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 55-216 1.98e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 49.62  E-value: 1.98e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  55 LNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQLLqaqnalesaygqFESHDFSKVLEY 134
Cdd:COG4235    6 LRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL------------LAAGDTEEAEEL 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 135 INKIvlvfspnclkakllkakallaledyssvisetgfiLKEDEDNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEH 214
Cdd:COG4235   74 LERA-----------------------------------LALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118


                 ..
gi 937900501 215 SE 216
Cdd:COG4235  119 AP 120
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 327-390 7.56e-07

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 51.71  E-value: 7.56e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937900501  327 WYKILGISKTASAADIKRAYKKLALQWHPDKNVDNreEAENMFREIAAAYEVLGDEDKRVRYDR 390
Cdd:PTZ00341  575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGN--EGFHKFKKINEAYQILGDIDKKKMYNK 636
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 24-124 8.24e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 48.26  E-value: 8.24e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  24 AQEGQDNDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVE 103
Cdd:COG4783   30 ALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAY 109

                         90       100
                 ....*....|....*....|.
gi 937900501 104 KELSQLLQAQNALESAYGQFE 124
Cdd:COG4783  110 LRLARAYRALGRPDEAIAALE 130
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 29-302 1.11e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.24  E-value: 1.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501   29 DNDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQ 108
Cdd:TIGR02917  19 DQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLAR 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  109 LLQAQNALESAYGQFE------SHDFSKVLEYIN----------------KIVLVFSPNCLKAKLLKAKALLALEDYSSV 166
Cdd:TIGR02917  99 AYLLQGKFQQVLDELPgktlldDEGAAELLALRGlaylglgqlelaqksyEQALAIDPRSLYAKLGLAQLALAENRFDEA 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  167 ISETGFILKEDEDNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSelkKAYFGLKNLLkktksaednAAKGKLRVS 246
Cdd:TIGR02917 179 RALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNI---AVLLALATIL---------IEAGEFEEA 246

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 937900501  247 AEDYKAALAMDPDHTSYNvhlYLglcKVLVKLGRGK--EAISSCTEALNIDGELVDAL 302
Cdd:TIGR02917 247 EKHADALLKKAPNSPLAH---YL---KALVDFQKKNyeDARETLQDALKSAPEYLPAL 298
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 28-144 1.39e-06

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 50.76  E-value: 1.39e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  28 QDNDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVekeLS 107
Cdd:COG3914  142 NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADA---HS 218

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 937900501 108 QLLQaqnALESAYGQFESHDFSKVLEYINKIVLVFSP 144
Cdd:COG3914  219 NLLF---ALRQACDWEVYDRFEELLAALARGPSELSP 252
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
179-352 2.59e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 48.37  E-value: 2.59e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 179 DNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSElkkAYFGLKNLLkktksaednAAKGKLRVSAEDYKAALAMDP 258
Cdd:COG4785   71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAE---AYNNRGLAY---------LLLGDYDAALEDFDRALELDP 138

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 259 DHTsyNVHLYLGLckVLVKLGRGKEAISSCTEALNIDGELVDALTQDMGIREALMRAEKQLKLSKRKDW-YKILGISKTA 337
Cdd:COG4785  139 DYA--YAYLNRGI--ALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKLDPEKALALLLEDWATaYLLQGDTEEA 214

                        170
                 ....*....|....*
gi 937900501 338 saadikRAYKKLALQ 352
Cdd:COG4785  215 ------RELFKLALA 223
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
30-97 3.48e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.99  E-value: 3.48e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937900501  30 NDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKP 97
Cdd:COG4785  105 DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDP 172
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
63-255 1.07e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 46.45  E-value: 1.07e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  63 PNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQLLQAQNALESAYgqfesHDFSKVLEyinkivlvF 142
Cdd:COG4785   70 PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAAL-----EDFDRALE--------L 136

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 143 SPnclkakllkakallaledyssvisetgfilkedeDNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEH-------- 214
Cdd:COG4785  137 DP----------------------------------DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDperalwly 182

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|..
gi 937900501 215 -SELKKAYFGLKNLLKKTKsAEDNAAKGKLRVSAEDYKAALA 255
Cdd:COG4785  183 lAERKLDPEKALALLLEDW-ATAYLLQGDTEEARELFKLALA 223
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
190-298 1.47e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 43.62  E-value: 1.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 190 AYYYLADHDVASRHYQKGLRLDPEHSElkkAYFGLKNLLKKTKSAEDnaakgklrvsAEDYKAALAMDPDhtsyNVHLYL 269
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNAD---ALNNLGLLLLEQGRYDE----------AIALEKALKLDPN----NAEALL 63

                         90       100
                 ....*....|....*....|....*....
gi 937900501 270 GLCKVLVKLGRGKEAISSCTEALNIDGEL 298
Cdd:COG3063   64 NLAELLLELGDYDEALAYLERALELDPSA 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 43-124 2.28e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.57  E-value: 2.28e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  43 MNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQLLQAQNALESAYGQ 122
Cdd:COG5010   65 NKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAA 144


                 ..
gi 937900501 123 FE 124
Cdd:COG5010  145 LQ 146
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
43-124 2.47e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.85  E-value: 2.47e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  43 MNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEgDYSKYLELKPGSSSVEKELSQLLQAQNALESAYGQ 122
Cdd:COG3063    3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAY 81


                 ..
gi 937900501 123 FE 124
Cdd:COG3063   82 LE 83
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 24-126 4.72e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.11  E-value: 4.72e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  24 AQEGQDNDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVE 103
Cdd:COG2956  136 LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPAL 215

                         90       100
                 ....*....|....*....|...
gi 937900501 104 KELSQLLQAQNALESAYGQFESH 126
Cdd:COG2956  216 PRLAELYEKLGDPEEALELLRKA 238
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
30-136 5.46e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.14  E-value: 5.46e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  30 NDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSS-------V 102
Cdd:COG4785   71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYaylnrgiA 150

                         90       100       110
                 ....*....|....*....|....*....|....
gi 937900501 103 EKELSQLLQAQNALESAYGQFESHDFSKVLEYIN 136
Cdd:COG4785  151 LYYLGRYELAIADLEKALELDPNDPERALWLYLA 184
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 24-97 6.26e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.87  E-value: 6.26e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 937900501  24 AQEGQDNDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKP 97
Cdd:COG4783   64 ALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 185-324 7.34e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 44.33  E-value: 7.34e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 185 LLRGRAYYYLADHDVASRHYQKGLRLDPEHSElkkAYFGLKNLLkktksaednAAKGKLRVSAEDYKAALAMDPDhtsyN 264
Cdd:COG2956   12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVE---AHLALGNLY---------RRRGEYDRAIRIHQKLLERDPD----R 75

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 265 VHLYLGLCKVLVKLGRGKEAISSCTEALNIDGELVDALTQDMGIREALMRAEKQLKLSKR 324
Cdd:COG2956   76 AEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLER 135
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 30-109 7.79e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 42.30  E-value: 7.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  30 NDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSS---SVEKEL 106
Cdd:COG4235   49 DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAparLLEASI 128


                 ...
gi 937900501 107 SQL 109
Cdd:COG4235  129 AEA 131
ZUO1 COG5269
Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / ...
 323-389 7.88e-05

Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 227594 [Multi-domain]  Cd Length: 379  Bit Score: 44.64  E-value: 7.88e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 937900501 323 KRKDWYKILGISKTASAAD---IKRAYKKLALQWHPDK-----NVDNREeaenMFREIAAAYEVLGDEDKRVRYD 389
Cdd:COG5269   41 KKVDLYALLGLSKYRTKAIppqILKAHKKKVYKYHPDKtaaggNKGCDE----FFKLIQKAREVLGDRKLRLQYD 111
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 181-302 1.56e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 1.56e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 181 LDALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSElkkAYFGLKNLLkktksaednAAKGKLRVSAEDYKAALAMDPDh 260
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPE---AFALLGEIL---------LQLGDLDEAIVLLHEALELDPD- 70

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 937900501 261 tsyNVHLYLGLCKVLVKLGRGKEAISSCTEALNIDGELVDAL 302
Cdd:COG4783   71 ---EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAY 109
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 24-217 2.21e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 2.21e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  24 AQEGQDNDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVE 103
Cdd:COG2956  102 LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARAL 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 104 KELSQLLQAQNALESAYGQFEShdfskvleyinkivlvfspnclkakllkakallaledyssvisetgfILKEDEDNLDA 183
Cdd:COG2956  182 LLLAELYLEQGDYEEAIAALER-----------------------------------------------ALEQDPDYLPA 214

                        170       180       190
                 ....*....|....*....|....*....|....
gi 937900501 184 LLLRGRAYYYLADHDVASRHYQKGLRLDPEHSEL 217
Cdd:COG2956  215 LPRLAELYEKLGDPEEALELLRKALELDPSDDLL 248
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 174-260 2.79e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.95  E-value: 2.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 174 LKEDEDNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSElkkAYFGLKNLLKKTksaednaakGKLRVSAEDYKAA 253
Cdd:COG4783   65 LELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE---AYLRLARAYRAL---------GRPDEAIAALEKA 132


                 ....*..
gi 937900501 254 LAMDPDH 260
Cdd:COG4783  133 LELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
24-120 7.16e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.15  E-value: 7.16e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  24 AQEGQDNDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVE 103
Cdd:COG0457  102 ALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAA 181

                         90
                 ....*....|....*..
gi 937900501 104 KELSQLLQAQNALESAY 120
Cdd:COG0457  182 ALGEAALALAAAEVLLA 198
PRK11189 PRK11189
lipoprotein NlpI; Provisional
 48-132 9.36e-04

lipoprotein NlpI; Provisional


Pssm-ID: 236875 [Multi-domain]  Cd Length: 296  Bit Score: 41.03  E-value: 9.36e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  48 YDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSS-------VEKELSQlLQAQNALESAY 120
Cdd:PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYralwlylAESKLDP-KQAKENLKQRY 192

                         90
                 ....*....|..
gi 937900501 121 GQFESHDFSKVL 132
Cdd:PRK11189 193 EKLDKEQWGWNI 204
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
174-269 1.51e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 39.90  E-value: 1.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 174 LKEDEDNLDALLLRGRAYYYLADHDVASRHYQKGLRLDPEHSElkkAYFGLKNLLKktksaednaAKGKLRVSAEDYKAA 253
Cdd:COG4785  100 LELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAY---AYLNRGIALY---------YLGRYELAIADLEKA 167

                         90
                 ....*....|....*.
gi 937900501 254 LAMDPDHTSYNVHLYL 269
Cdd:COG4785  168 LELDPNDPERALWLYL 183
PTZ00100 PTZ00100
DnaJ chaperone protein; Provisional
 320-356 3.48e-03

DnaJ chaperone protein; Provisional


Pssm-ID: 240265  Cd Length: 116  Bit Score: 37.14  E-value: 3.48e-03
                         10        20        30
                 ....*....|....*....|....*....|....*..
gi 937900501 320 KLSKRKDwYKILGISKTASAADIKRAYKKLALQWHPD 356
Cdd:PTZ00100  61 PMSKSEA-YKILNISPTASKERIREAHKQLMLRNHPD 96
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 30-124 6.44e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.91  E-value: 6.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501  30 NDPSTLFKRASEMMNLRKYDGSLGLLNAVLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKPGSSSVEKELSQL 109
Cdd:COG4235   15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA 94

                         90
                 ....*....|....*
gi 937900501 110 LQAQNALESAYGQFE 124
Cdd:COG4235   95 AFQQGDYAEAIAAWQ 109
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
30-97 6.50e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 35.92  E-value: 6.50e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 937900501  30 NDPSTLFKRASEMMNLRKYDGSLGLLNAvLEVDPNHSEAYRQRASVLRHKCRYKEAEGDYSKYLELKP 97
Cdd:COG3063   24 DNADALNNLGLLLLEQGRYDEAIALEKA-LKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDP 90
PHA03102 PHA03102
Small T antigen; Reviewed
 329-396 8.18e-03

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 36.96  E-value: 8.18e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 937900501 329 KILGISKTA--SAADIKRAYKKLALQWHPDKNVDnreeaENMFREIAAAYEVLGDEDKRVRYDRGEDLDE 396
Cdd:PHA03102   9 DLLGLPRSAwgNLPLMRKAYLRKCLEFHPDKGGD-----EEKMKELNTLYKKFRESVKSLRDLDGEEDSS 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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