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Conserved domains on  [gi|806921365|dbj|BAR52368|]
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repeat protein [Tannerella forsythia KS16]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1513-1555 4.83e-11

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


:

Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 59.56  E-value: 4.83e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365  1513 PTRTGWTFVGWTGSNGSVPQTTVTVPQGSTGDLNYTAHWSANA 1555
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1352-1393 5.94e-11

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


:

Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 59.17  E-value: 5.94e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 806921365  1352 PTRTGYAFAGWTGTDLTTPSTSVTIPTGSIGDRNYTATWSEN 1393
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPN 42
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 651-693 2.00e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


:

Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 57.63  E-value: 2.00e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365   651 PRKPGFTFTGWTGSNGTSPSTSVSIPQGSTGNKNYTANWTENT 693
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 810-852 2.12e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


:

Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 57.63  E-value: 2.12e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365   810 PTRSGYTFAGWSGTELSGQVMDVRIPRGSTGNREYTANWTPIN 852
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1041-1083 6.08e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


:

Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 56.48  E-value: 6.08e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365  1041 PTRTGYTFAGWTGTGIVGTSMSVQIPQGSVGHRSYTATWTADR 1083
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1115-1157 6.39e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


:

Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 56.48  E-value: 6.39e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365  1115 PTRSGYTFAGWTGTGISGSSMSVQIPLGSTGNRTYTATWTPIT 1157
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 964-1009 7.18e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


:

Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 56.09  E-value: 7.18e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 806921365   964 PTRTGYTFNGWTGHGLTNHKAPFTIastTNGVPGNLTYTAQWTLDT 1009
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTI---PSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 886-928 1.47e-09

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


:

Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 55.32  E-value: 1.47e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365   886 PTKPGWTFTGWTGGAGADGGKVITIPNNTHANQSYTATWSSIA 928
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1433-1481 4.65e-08

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


:

Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 51.09  E-value: 4.65e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 806921365  1433 PTRTGYDFTGWTGHDLTVANKTINVqastfsTPGTPENLTYTAHWNPIT 1481
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTI------PSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 574-618 7.36e-08

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


:

Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 50.31  E-value: 7.36e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 806921365   574 PTRKGYTFKGWTCQELniTTPAKPFVIPAHTDKNLTLRADWGLDS 618
Cdd:TIGR02543    1 PTKTGYTFVGWTGDST--GTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 732-780 8.28e-08

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


:

Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 50.31  E-value: 8.28e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 806921365   732 PTRTGYDFTGWTGPNATSVTKTVHVtnavflPTGDPQNLSYTANWTPIN 780
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTI------PSGSTGDLTLYAKWTPNT 43
RhsA super family cl34567
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ...
 890-1632 2.23e-07

Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];


The actual alignment was detected with superfamily member COG3209:

Pssm-ID: 442442 [Multi-domain]  Cd Length: 1103  Bit Score: 56.69  E-value: 2.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  890 GWTFTGWTGGAGADGGKVITIPNNTHANQSYTATWSSIAYTITFNPNGGVNPTIQPNWTSYDMSKLPLSGVSVTPTRTGY 969
Cdd:COG3209    20 ATNAGGGTAVTNAGSTVLLAKGGLSTAAAAGGAATLTARSASTTDVVGTLTGAGGTSAGGVTALGDASAAGGGYVGGAAA 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  970 TFNGWTGHGLTNHKAPFTIASTTNGVPGNLTYTAQWTLDTYNLNYDLGGGTVATANPATYTYTTSTITLNNPTRTGYTFA 1049
Cdd:COG3209   100 GGGATLTGLAAATASAGRLVSTGAGAGGTVTAATGGTLGATAGSATTGSTDGGRGGVAVTGLAGGGASAYGLTLGGAAAG 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1050 GWTGTGIVGTSMSVQIPQGSVGHRSYTATWTADRYTITYDLAEGTVTTPNPDEYYVTTPTITL-HNPTRSGYTFAGWTGT 1128
Cdd:COG3209   180 PATGVGTGAVTLATGLAGSALLALGSGAILGGLAGAYSGSATTATGTALGTPASVAATVTGSAtGAAGAGAAVATAATTL 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1129 GISGSSMSVQIPLGSTGNRTYTATWTPITYTIKYVDDDGATVLTTVSAGAPTQFNDTELPKTFSVTATKPGFTFVGWEQG 1208
Cdd:COG3209   260 GGTTGAGTGASGAGLDASTGTGGAGGSNAAATAGGLGGAGLGSGGAGGGGTAGGTTTAAGTTGTAAVSGAADAGTTTTTG 339

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1209 AGASGGPAITIPKVSSSHAHQTYKAIWTSNAYTITFNANGGINPSIPSIWTGYDMPKLPLNNVSVTPTYRGYTFAGWNGH 1288
Cdd:COG3209   340 TGTGGTTTTVGGGGSLTLGGYGAAGGLTTSVGAGGGGSTSGSTTTVGGGGTATGSGGGSSTTGVGAGTTTTSTTGGDGGP 419

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1289 GLTNQTAPFNITSSTNGVPGNLTYIAQWNIITYNITYTLAGGTVSPTNPASYQVTTPAITLNNPTRTGYAFAGWTGTDLT 1368
Cdd:COG3209   420 ATAAGALTAGGTATGTGTGGGGTTAGTDATTTTGGAGASGTLTTTGGAATGATTGGGTEAGTGGGTLTSGSAGATTLGTD 499

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1369 TPSTSVTIPTGSIGDRNYTATWSENGYTITYNLNNGMAPATPNKATFKITEVPFVINTTAPANQPTRTGYDFTGWTGHDL 1448
Cdd:COG3209   500 TTLDDTLGGTTTTTAGARGLVVTTGTTLTLGTTTTATLSATDATGTGDTTTTGTVGTGTSTGTGGTGTVTTTGDGTGGAS 579

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1449 TVANKTINVQASTFSTPGTPENLTYTAHWNPITYTIHYTLDHGTEGAGHVTSYTVETATFNLVPPTRTGWTFVGWTGSNG 1528
Cdd:COG3209   580 TTTGTTGGTATTTTVTTTTTTSTAGTTTTTTSGYTRAGLTLTLGTGTASGLERATASTGSTTGGTTGTGVTTTGTTTTRA 659

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1529 SVPQTTVTVPQGSTGDLNYTAHWSANAYTITFNPNGGVNPTIPSNLAGYNVTDLPLDVNLTPTRLGYTFKGWTGHGLPGT 1608
Cdd:COG3209   660 TGTTGTGTGVTAGLTTLATGGTTVGGGTGTTSTATTGATTGGTETGTTVTTLAGGTTTRLGTTTTGGGGGTTTDGTGTGG 739

                         730       740
                  ....*....|....*....|....
gi 806921365 1609 PDPFRIENTTPGVPGNLTFTATWD 1632
Cdd:COG3209   740 TTGTLTTTSTTTTTTAGALTYTYD 763
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 781-821 3.91e-06

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


:

Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 46.47  E-value: 3.91e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 806921365   781 YTLTYHLNGGTasNPTNYTIESAELSLNRPTRSGYTFAGWS 821
Cdd:pfam09479    1 YTVTFDANGGT--VSQTVTYGTTITLPADPTKEGYTFAGWY 39
 
Name Accession Description Interval E-value
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1513-1555 4.83e-11

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 59.56  E-value: 4.83e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365  1513 PTRTGWTFVGWTGSNGSVPQTTVTVPQGSTGDLNYTAHWSANA 1555
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1352-1393 5.94e-11

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 59.17  E-value: 5.94e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 806921365  1352 PTRTGYAFAGWTGTDLTTPSTSVTIPTGSIGDRNYTATWSEN 1393
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPN 42
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 651-693 2.00e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 57.63  E-value: 2.00e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365   651 PRKPGFTFTGWTGSNGTSPSTSVSIPQGSTGNKNYTANWTENT 693
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 810-852 2.12e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 57.63  E-value: 2.12e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365   810 PTRSGYTFAGWSGTELSGQVMDVRIPRGSTGNREYTANWTPIN 852
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1041-1083 6.08e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 56.48  E-value: 6.08e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365  1041 PTRTGYTFAGWTGTGIVGTSMSVQIPQGSVGHRSYTATWTADR 1083
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1115-1157 6.39e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 56.48  E-value: 6.39e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365  1115 PTRSGYTFAGWTGTGISGSSMSVQIPLGSTGNRTYTATWTPIT 1157
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 964-1009 7.18e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 56.09  E-value: 7.18e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 806921365   964 PTRTGYTFNGWTGHGLTNHKAPFTIastTNGVPGNLTYTAQWTLDT 1009
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTI---PSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 886-928 1.47e-09

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 55.32  E-value: 1.47e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365   886 PTKPGWTFTGWTGGAGADGGKVITIPNNTHANQSYTATWSSIA 928
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1433-1481 4.65e-08

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 51.09  E-value: 4.65e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 806921365  1433 PTRTGYDFTGWTGHDLTVANKTINVqastfsTPGTPENLTYTAHWNPIT 1481
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTI------PSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 574-618 7.36e-08

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 50.31  E-value: 7.36e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 806921365   574 PTRKGYTFKGWTCQELniTTPAKPFVIPAHTDKNLTLRADWGLDS 618
Cdd:TIGR02543    1 PTKTGYTFVGWTGDST--GTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 732-780 8.28e-08

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 50.31  E-value: 8.28e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 806921365   732 PTRTGYDFTGWTGPNATSVTKTVHVtnavflPTGDPQNLSYTANWTPIN 780
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTI------PSGSTGDLTLYAKWTPNT 43
RhsA COG3209
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ...
 890-1632 2.23e-07

Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];


Pssm-ID: 442442 [Multi-domain]  Cd Length: 1103  Bit Score: 56.69  E-value: 2.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  890 GWTFTGWTGGAGADGGKVITIPNNTHANQSYTATWSSIAYTITFNPNGGVNPTIQPNWTSYDMSKLPLSGVSVTPTRTGY 969
Cdd:COG3209    20 ATNAGGGTAVTNAGSTVLLAKGGLSTAAAAGGAATLTARSASTTDVVGTLTGAGGTSAGGVTALGDASAAGGGYVGGAAA 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  970 TFNGWTGHGLTNHKAPFTIASTTNGVPGNLTYTAQWTLDTYNLNYDLGGGTVATANPATYTYTTSTITLNNPTRTGYTFA 1049
Cdd:COG3209   100 GGGATLTGLAAATASAGRLVSTGAGAGGTVTAATGGTLGATAGSATTGSTDGGRGGVAVTGLAGGGASAYGLTLGGAAAG 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1050 GWTGTGIVGTSMSVQIPQGSVGHRSYTATWTADRYTITYDLAEGTVTTPNPDEYYVTTPTITL-HNPTRSGYTFAGWTGT 1128
Cdd:COG3209   180 PATGVGTGAVTLATGLAGSALLALGSGAILGGLAGAYSGSATTATGTALGTPASVAATVTGSAtGAAGAGAAVATAATTL 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1129 GISGSSMSVQIPLGSTGNRTYTATWTPITYTIKYVDDDGATVLTTVSAGAPTQFNDTELPKTFSVTATKPGFTFVGWEQG 1208
Cdd:COG3209   260 GGTTGAGTGASGAGLDASTGTGGAGGSNAAATAGGLGGAGLGSGGAGGGGTAGGTTTAAGTTGTAAVSGAADAGTTTTTG 339

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1209 AGASGGPAITIPKVSSSHAHQTYKAIWTSNAYTITFNANGGINPSIPSIWTGYDMPKLPLNNVSVTPTYRGYTFAGWNGH 1288
Cdd:COG3209   340 TGTGGTTTTVGGGGSLTLGGYGAAGGLTTSVGAGGGGSTSGSTTTVGGGGTATGSGGGSSTTGVGAGTTTTSTTGGDGGP 419

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1289 GLTNQTAPFNITSSTNGVPGNLTYIAQWNIITYNITYTLAGGTVSPTNPASYQVTTPAITLNNPTRTGYAFAGWTGTDLT 1368
Cdd:COG3209   420 ATAAGALTAGGTATGTGTGGGGTTAGTDATTTTGGAGASGTLTTTGGAATGATTGGGTEAGTGGGTLTSGSAGATTLGTD 499

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1369 TPSTSVTIPTGSIGDRNYTATWSENGYTITYNLNNGMAPATPNKATFKITEVPFVINTTAPANQPTRTGYDFTGWTGHDL 1448
Cdd:COG3209   500 TTLDDTLGGTTTTTAGARGLVVTTGTTLTLGTTTTATLSATDATGTGDTTTTGTVGTGTSTGTGGTGTVTTTGDGTGGAS 579

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1449 TVANKTINVQASTFSTPGTPENLTYTAHWNPITYTIHYTLDHGTEGAGHVTSYTVETATFNLVPPTRTGWTFVGWTGSNG 1528
Cdd:COG3209   580 TTTGTTGGTATTTTVTTTTTTSTAGTTTTTTSGYTRAGLTLTLGTGTASGLERATASTGSTTGGTTGTGVTTTGTTTTRA 659

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1529 SVPQTTVTVPQGSTGDLNYTAHWSANAYTITFNPNGGVNPTIPSNLAGYNVTDLPLDVNLTPTRLGYTFKGWTGHGLPGT 1608
Cdd:COG3209   660 TGTTGTGTGVTAGLTTLATGGTTVGGGTGTTSTATTGATTGGTETGTTVTTLAGGTTTRLGTTTTGGGGGTTTDGTGTGG 739

                         730       740
                  ....*....|....*....|....
gi 806921365 1609 PDPFRIENTTPGVPGNLTFTATWD 1632
Cdd:COG3209   740 TTGTLTTTSTTTTTTAGALTYTYD 763
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1590-1635 2.74e-06

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 46.08  E-value: 2.74e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 806921365  1590 PTRLGYTFKGWTGHGLPGTPDPFrieNTTPGVPGNLTFTATWDLNN 1635
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNF---TIPSGSTGDLTLYAKWTPNT 43
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 781-821 3.91e-06

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 46.47  E-value: 3.91e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 806921365   781 YTLTYHLNGGTasNPTNYTIESAELSLNRPTRSGYTFAGWS 821
Cdd:pfam09479    1 YTVTFDANGGT--VSQTVTYGTTITLPADPTKEGYTFAGWY 39
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 1321-1381 4.31e-06

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 46.08  E-value: 4.31e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 806921365  1321 YNITYTLAGGTVSPTNPASYQVTTPAitlnNPTRTGYAFAGW-TGTDLTTP--STSVTIPTGSI 1381
Cdd:pfam09479    1 YTVTFDANGGTVSQTVTYGTTITLPA----DPTKEGYTFAGWyTDSDGTTKytFGTDVTPTGDI 60
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 543-612 5.04e-06

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 46.08  E-value: 5.04e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365   543 KITYDYNGGTAPTTsnpatYLYDQSMTIQNEPTRKGYTFKGWTCQElNITTPAKpFVIPAHTDKNLTLRA 612
Cdd:pfam09479    2 TVTFDANGGTVSQT-----VTYGTTITLPADPTKEGYTFAGWYTDS-DGTTKYT-FGTDVTPTGDITLYA 64
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 1084-1151 1.35e-05

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 44.93  E-value: 1.35e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 806921365  1084 YTITYDLAEGTVTTPNPDEYYVTTPTitlhNPTRSGYTFAGWTGTGISGSSMSVQIPLGSTGNRTYTA 1151
Cdd:pfam09479    1 YTVTFDANGGTVSQTVTYGTTITLPA----DPTKEGYTFAGWYTDSDGTTKYTFGTDVTPTGDITLYA 64
RhsA COG3209
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ...
 367-1125 3.49e-05

Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];


Pssm-ID: 442442 [Multi-domain]  Cd Length: 1103  Bit Score: 49.37  E-value: 3.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  367 TLHNGTAQQGTHFTYVKGVTIPAGDYNTAKEITLNNITIKDNTTCNNDLTFQISIDDPGQCNDLIRKSPTNNQATVTIRD 446
Cdd:COG3209    17 LLAATNAGGGTAVTNAGSTVLLAKGGLSTAAAAGGAATLTARSASTTDVVGTLTGAGGTSAGGVTALGDASAAGGGYVGG 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  447 DEVHPAITTNLPNLEYHYGQTVPAITFATNPTNATVTWTNSNTSIGLNSSSGNGNLPSFTAKNESSAPIMATITATPQGI 526
Cdd:COG3209    97 AAAGGGATLTGLAAATASAGRLVSTGAGAGGTVTAATGGTLGATAGSATTGSTDGGRGGVAVTGLAGGGASAYGLTLGGA 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  527 CPGAPKTFTIKVHPKLKITYDYNGGTAPTTSNPATYLYDQSMTIQNEPTRKGYTFKGWTCQELNITTPAKPFVIPAHTDK 606
Cdd:COG3209   177 AAGPATGVGTGAVTLATGLAGSALLALGSGAILGGLAGAYSGSATTATGTALGTPASVAATVTGSATGAAGAGAAVATAA 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  607 NLTLRADWGLDSYTITYTLDGGVVEGGSNPTLYDVNTPSFSLRAPRKPGFTFTGWTGSNGTSPSTSVSIPQGSTGNKNYT 686
Cdd:COG3209   257 TTLGGTTGAGTGASGAGLDASTGTGGAGGSNAAATAGGLGGAGLGSGGAGGGGTAGGTTTAAGTTGTAAVSGAADAGTTT 336

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  687 ANWTENTYTISYNYNSGNAPASPNKANYKITEVPFDINSTATANQPTRTGYDFTGWTGPNATSVTKTVHVTNAVFLPTGD 766
Cdd:COG3209   337 TTGTGTGGTTTTVGGGGSLTLGGYGAAGGLTTSVGAGGGGSTSGSTTTVGGGGTATGSGGGSSTTGVGAGTTTTSTTGGD 416

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  767 PQNLSYTANWTPINYTLTYHLNGGTASNPTNYTIESAELSLNRPTRSGYTFAGWSGTELSGQVMDVRIPRGSTGNREYTA 846
Cdd:COG3209   417 GGPATAAGALTAGGTATGTGTGGGGTTAGTDATTTTGGAGASGTLTTTGGAATGATTGGGTEAGTGGGTLTSGSAGATTL 496

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  847 NWTPINYTITYLDGSATITVPGAPTQFNDPQLPLTINNEPTKPGWTFTGWTGGAGADGGKVITIPNNTHANQSYTATWSS 926
Cdd:COG3209   497 GTDTTLDDTLGGTTTTTAGARGLVVTTGTTLTLGTTTTATLSATDATGTGDTTTTGTVGTGTSTGTGGTGTVTTTGDGTG 576

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  927 IAYTITFNPNGGVNPTIQPNWTSYDMSKLPLSGVSVTPTRTGYTFNGWTGHGLTNHKAPFTIASTTNGVPGNLTYTAQWT 1006
Cdd:COG3209   577 GASTTTGTTGGTATTTTVTTTTTTSTAGTTTTTTSGYTRAGLTLTLGTGTASGLERATASTGSTTGGTTGTGVTTTGTTT 656

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1007 LDTYNLNYDLGGGTVATANPATYTYTTSTITLNNPTRTGYTFAGWTGTGIVGTSMSVQIPQGSVGHRSYTATWTADRYTI 1086
Cdd:COG3209   657 TRATGTTGTGTGVTAGLTTLATGGTTVGGGTGTTSTATTGATTGGTETGTTVTTLAGGTTTRLGTTTTGGGGGTTTDGTG 736

                         730       740       750
                  ....*....|....*....|....*....|....*....
gi 806921365 1087 TYDLAEGTVTTPNPDEYYVTTPTITlhnptrsgYTFAGW 1125
Cdd:COG3209   737 TGGTTGTLTTTSTTTTTTAGALTYT--------YDALGR 767
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 929-1004 1.06e-04

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 42.23  E-value: 1.06e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 806921365   929 YTITFNPNGGVNPTIQPNWTSYDMSKlplsgvsvTPTRTGYTFNGW-TGHGLTNhKAPFTIASTTNgvpGNLTYTAQ 1004
Cdd:pfam09479    1 YTVTFDANGGTVSQTVTYGTTITLPA--------DPTKEGYTFAGWyTDSDGTT-KYTFGTDVTPT---GDITLYAK 65
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 1395-1476 1.66e-03

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 38.76  E-value: 1.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  1395 YTITYNLNNGMAPATpnkatfkiteVPFVINTTAPANqPTRTGYDFTGW-TGHDLTVANktinvqasTFSTPGTP-ENLT 1472
Cdd:pfam09479    1 YTVTFDANGGTVSQT----------VTYGTTITLPAD-PTKEGYTFAGWyTDSDGTTKY--------TFGTDVTPtGDIT 61


                   ....
gi 806921365  1473 YTAH 1476
Cdd:pfam09479   62 LYAK 65
Flg_new_2 pfam18998
Divergent InlB B-repeat domain; This family of domains are found in bacterial cell surface ...
 1321-1394 3.86e-03

Divergent InlB B-repeat domain; This family of domains are found in bacterial cell surface proteins. They are often found in tandem array. This domain is closely related to pfam09479.


Pssm-ID: 436898 [Multi-domain]  Cd Length: 74  Bit Score: 38.10  E-value: 3.86e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 806921365  1321 YNITYT-LAGGTVSPTNPASYQVTTpaITLNNPTRTGYAFAGWT----GTDLTTPSTSVTIPTgsiGDRNYTATWSENG 1394
Cdd:pfam18998    1 YTVTVTaGAGGTVTGSSGTYAEGTT--VTLTATPDSGYEFTGWTgdagGTDATSANTTFTMPA---ANVTVTATFEAIG 74
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 619-687 6.76e-03

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 37.22  E-value: 6.76e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365   619 YTITYTLDGGvveggSNPTLYDVNTPSFSLRAPRKPGFTFTGW-TGSNGTSPSTSvSIPQGSTGNKNYTA 687
Cdd:pfam09479    1 YTVTFDANGG-----TVSQTVTYGTTITLPADPTKEGYTFAGWyTDSDGTTKYTF-GTDVTPTGDITLYA 64
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 1482-1550 7.84e-03

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 36.84  E-value: 7.84e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  1482 YTIHYTLDHGTEgaghVTSYTVETATFNLVPPTRTGWTFVGW-TGSNGSVPQTTVTvPQGSTGDLNYTAH 1550
Cdd:pfam09479    1 YTVTFDANGGTV----SQTVTYGTTITLPADPTKEGYTFAGWyTDSDGTTKYTFGT-DVTPTGDITLYAK 65
 
Name Accession Description Interval E-value
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1513-1555 4.83e-11

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 59.56  E-value: 4.83e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365  1513 PTRTGWTFVGWTGSNGSVPQTTVTVPQGSTGDLNYTAHWSANA 1555
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1352-1393 5.94e-11

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 59.17  E-value: 5.94e-11
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 806921365  1352 PTRTGYAFAGWTGTDLTTPSTSVTIPTGSIGDRNYTATWSEN 1393
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPN 42
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 651-693 2.00e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 57.63  E-value: 2.00e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365   651 PRKPGFTFTGWTGSNGTSPSTSVSIPQGSTGNKNYTANWTENT 693
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 810-852 2.12e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 57.63  E-value: 2.12e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365   810 PTRSGYTFAGWSGTELSGQVMDVRIPRGSTGNREYTANWTPIN 852
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1041-1083 6.08e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 56.48  E-value: 6.08e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365  1041 PTRTGYTFAGWTGTGIVGTSMSVQIPQGSVGHRSYTATWTADR 1083
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1115-1157 6.39e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 56.48  E-value: 6.39e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365  1115 PTRSGYTFAGWTGTGISGSSMSVQIPLGSTGNRTYTATWTPIT 1157
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 964-1009 7.18e-10

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 56.09  E-value: 7.18e-10
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 806921365   964 PTRTGYTFNGWTGHGLTNHKAPFTIastTNGVPGNLTYTAQWTLDT 1009
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTI---PSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 886-928 1.47e-09

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 55.32  E-value: 1.47e-09
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 806921365   886 PTKPGWTFTGWTGGAGADGGKVITIPNNTHANQSYTATWSSIA 928
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1433-1481 4.65e-08

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 51.09  E-value: 4.65e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 806921365  1433 PTRTGYDFTGWTGHDLTVANKTINVqastfsTPGTPENLTYTAHWNPIT 1481
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTI------PSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 574-618 7.36e-08

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 50.31  E-value: 7.36e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 806921365   574 PTRKGYTFKGWTCQELniTTPAKPFVIPAHTDKNLTLRADWGLDS 618
Cdd:TIGR02543    1 PTKTGYTFVGWTGDST--GTPVKNFTIPSGSTGDLTLYAKWTPNT 43
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 732-780 8.28e-08

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 50.31  E-value: 8.28e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*....
gi 806921365   732 PTRTGYDFTGWTGPNATSVTKTVHVtnavflPTGDPQNLSYTANWTPIN 780
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTI------PSGSTGDLTLYAKWTPNT 43
RhsA COG3209
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ...
 890-1632 2.23e-07

Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];


Pssm-ID: 442442 [Multi-domain]  Cd Length: 1103  Bit Score: 56.69  E-value: 2.23e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  890 GWTFTGWTGGAGADGGKVITIPNNTHANQSYTATWSSIAYTITFNPNGGVNPTIQPNWTSYDMSKLPLSGVSVTPTRTGY 969
Cdd:COG3209    20 ATNAGGGTAVTNAGSTVLLAKGGLSTAAAAGGAATLTARSASTTDVVGTLTGAGGTSAGGVTALGDASAAGGGYVGGAAA 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  970 TFNGWTGHGLTNHKAPFTIASTTNGVPGNLTYTAQWTLDTYNLNYDLGGGTVATANPATYTYTTSTITLNNPTRTGYTFA 1049
Cdd:COG3209   100 GGGATLTGLAAATASAGRLVSTGAGAGGTVTAATGGTLGATAGSATTGSTDGGRGGVAVTGLAGGGASAYGLTLGGAAAG 179

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1050 GWTGTGIVGTSMSVQIPQGSVGHRSYTATWTADRYTITYDLAEGTVTTPNPDEYYVTTPTITL-HNPTRSGYTFAGWTGT 1128
Cdd:COG3209   180 PATGVGTGAVTLATGLAGSALLALGSGAILGGLAGAYSGSATTATGTALGTPASVAATVTGSAtGAAGAGAAVATAATTL 259

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1129 GISGSSMSVQIPLGSTGNRTYTATWTPITYTIKYVDDDGATVLTTVSAGAPTQFNDTELPKTFSVTATKPGFTFVGWEQG 1208
Cdd:COG3209   260 GGTTGAGTGASGAGLDASTGTGGAGGSNAAATAGGLGGAGLGSGGAGGGGTAGGTTTAAGTTGTAAVSGAADAGTTTTTG 339

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1209 AGASGGPAITIPKVSSSHAHQTYKAIWTSNAYTITFNANGGINPSIPSIWTGYDMPKLPLNNVSVTPTYRGYTFAGWNGH 1288
Cdd:COG3209   340 TGTGGTTTTVGGGGSLTLGGYGAAGGLTTSVGAGGGGSTSGSTTTVGGGGTATGSGGGSSTTGVGAGTTTTSTTGGDGGP 419

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1289 GLTNQTAPFNITSSTNGVPGNLTYIAQWNIITYNITYTLAGGTVSPTNPASYQVTTPAITLNNPTRTGYAFAGWTGTDLT 1368
Cdd:COG3209   420 ATAAGALTAGGTATGTGTGGGGTTAGTDATTTTGGAGASGTLTTTGGAATGATTGGGTEAGTGGGTLTSGSAGATTLGTD 499

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1369 TPSTSVTIPTGSIGDRNYTATWSENGYTITYNLNNGMAPATPNKATFKITEVPFVINTTAPANQPTRTGYDFTGWTGHDL 1448
Cdd:COG3209   500 TTLDDTLGGTTTTTAGARGLVVTTGTTLTLGTTTTATLSATDATGTGDTTTTGTVGTGTSTGTGGTGTVTTTGDGTGGAS 579

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1449 TVANKTINVQASTFSTPGTPENLTYTAHWNPITYTIHYTLDHGTEGAGHVTSYTVETATFNLVPPTRTGWTFVGWTGSNG 1528
Cdd:COG3209   580 TTTGTTGGTATTTTVTTTTTTSTAGTTTTTTSGYTRAGLTLTLGTGTASGLERATASTGSTTGGTTGTGVTTTGTTTTRA 659

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1529 SVPQTTVTVPQGSTGDLNYTAHWSANAYTITFNPNGGVNPTIPSNLAGYNVTDLPLDVNLTPTRLGYTFKGWTGHGLPGT 1608
Cdd:COG3209   660 TGTTGTGTGVTAGLTTLATGGTTVGGGTGTTSTATTGATTGGTETGTTVTTLAGGTTTRLGTTTTGGGGGTTTDGTGTGG 739

                         730       740
                  ....*....|....*....|....
gi 806921365 1609 PDPFRIENTTPGVPGNLTFTATWD 1632
Cdd:COG3209   740 TTGTLTTTSTTTTTTAGALTYTYD 763
RhsA COG3209
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ...
 686-1490 1.95e-06

Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];


Pssm-ID: 442442 [Multi-domain]  Cd Length: 1103  Bit Score: 53.61  E-value: 1.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  686 TANWTENTYTISYNYNSGNAPASPNKANYKITEVPFDINSTATANQPTRTGYDFTGWTGPNATSVTKTVHVTNAVFLPTG 765
Cdd:COG3209     1 ETSLGLVGGTTGASSTLLAATNAGGGTAVTNAGSTVLLAKGGLSTAAAAGGAATLTARSASTTDVVGTLTGAGGTSAGGV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  766 DPQNLSYTANWTPINYTLTYHLNGGTASNPTNYTIESAELSLNRPTRSGYTFAGWSGTELSGQVMDVRIPRGSTGNREYT 845
Cdd:COG3209    81 TALGDASAAGGGYVGGAAAGGGATLTGLAAATASAGRLVSTGAGAGGTVTAATGGTLGATAGSATTGSTDGGRGGVAVTG 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  846 ANWTPINYTITYLDGSATITVPGAPTQFNDPQLPLTINNEPTKPGWTFTGWTGGAGADGGKVITIPNNTHANQSYTATWS 925
Cdd:COG3209   161 LAGGGASAYGLTLGGAAAGPATGVGTGAVTLATGLAGSALLALGSGAILGGLAGAYSGSATTATGTALGTPASVAATVTG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  926 SIAYTITFNPNGGVNPTIQPNWTSYDMSKLPLSGVSVTPTRTGYTFNGWTGHGLTNHKAPFTIASTTNGVPGNLTYTAQW 1005
Cdd:COG3209   241 SATGAAGAGAAVATAATTLGGTTGAGTGASGAGLDASTGTGGAGGSNAAATAGGLGGAGLGSGGAGGGGTAGGTTTAAGT 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1006 TLDTYNLNYDLGGGTVATANPATYTYTTSTITLNNPTRTGYTFAGWTGTGIVGTSMSVQIPQGSVGHRSYTATWTADRYT 1085
Cdd:COG3209   321 TGTAAVSGAADAGTTTTTGTGTGGTTTTVGGGGSLTLGGYGAAGGLTTSVGAGGGGSTSGSTTTVGGGGTATGSGGGSST 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1086 ITYDLAEGTVTTPNPDEYYVTTPTITLHNPTRSGYTFAGWTGTGISGSSMSVQIPLGSTGNRTYTATWTPITYTIKYVDD 1165
Cdd:COG3209   401 TGVGAGTTTTSTTGGDGGPATAAGALTAGGTATGTGTGGGGTTAGTDATTTTGGAGASGTLTTTGGAATGATTGGGTEAG 480

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1166 DGATVLTTVSAGAPTQFNDTELPKTFSVTATkpgfTFVGWEQGAGASGGPAITIPKVSSSHAHQTYKAIWTSNAYTITFN 1245
Cdd:COG3209   481 TGGGTLTSGSAGATTLGTDTTLDDTLGGTTT----TTAGARGLVVTTGTTLTLGTTTTATLSATDATGTGDTTTTGTVGT 556

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1246 ANGGINPSIPSIWTGYDMPKLPLNNVSVTPTYRGYTFAGWNGHGLTNQTAPFNITSSTNGVPGNLTYIAQWNIITYNITY 1325
Cdd:COG3209   557 GTSTGTGGTGTVTTTGDGTGGASTTTGTTGGTATTTTVTTTTTTSTAGTTTTTTSGYTRAGLTLTLGTGTASGLERATAS 636

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1326 TLAGGTVSPTNPASYQVTTPAITLNNPTRTGYAFAGWTGTDLTTPSTSVTIPTGSIGDRNYTATWSENGYTITYNLNNGM 1405
Cdd:COG3209   637 TGSTTGGTTGTGVTTTGTTTTRATGTTGTGTGVTAGLTTLATGGTTVGGGTGTTSTATTGATTGGTETGTTVTTLAGGTT 716

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1406 ApatpnkatfkiTEVPFVINTTAPANQPTRTGYDFTGWTGHDLTVANKTINVQASTFSTPGTPENLTYTAHWNPITYTIH 1485
Cdd:COG3209   717 T-----------RLGTTTTGGGGGTTTDGTGTGGTTGTLTTTSTTTTTTAGALTYTYDALGRLTSETTPGGVTQGTYTTR 785


                  ....*
gi 806921365 1486 YTLDH 1490
Cdd:COG3209   786 YTYDA 790
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1590-1635 2.74e-06

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 46.08  E-value: 2.74e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 806921365  1590 PTRLGYTFKGWTGHGLPGTPDPFrieNTTPGVPGNLTFTATWDLNN 1635
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNF---TIPSGSTGDLTLYAKWTPNT 43
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 781-821 3.91e-06

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 46.47  E-value: 3.91e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 806921365   781 YTLTYHLNGGTasNPTNYTIESAELSLNRPTRSGYTFAGWS 821
Cdd:pfam09479    1 YTVTFDANGGT--VSQTVTYGTTITLPADPTKEGYTFAGWY 39
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 1321-1381 4.31e-06

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 46.08  E-value: 4.31e-06
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 806921365  1321 YNITYTLAGGTVSPTNPASYQVTTPAitlnNPTRTGYAFAGW-TGTDLTTP--STSVTIPTGSI 1381
Cdd:pfam09479    1 YTVTFDANGGTVSQTVTYGTTITLPA----DPTKEGYTFAGWyTDSDGTTKytFGTDVTPTGDI 60
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 543-612 5.04e-06

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 46.08  E-value: 5.04e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365   543 KITYDYNGGTAPTTsnpatYLYDQSMTIQNEPTRKGYTFKGWTCQElNITTPAKpFVIPAHTDKNLTLRA 612
Cdd:pfam09479    2 TVTFDANGGTVSQT-----VTYGTTITLPADPTKEGYTFAGWYTDS-DGTTKYT-FGTDVTPTGDITLYA 64
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 1084-1151 1.35e-05

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 44.93  E-value: 1.35e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 806921365  1084 YTITYDLAEGTVTTPNPDEYYVTTPTitlhNPTRSGYTFAGWTGTGISGSSMSVQIPLGSTGNRTYTA 1151
Cdd:pfam09479    1 YTVTFDANGGTVSQTVTYGTTITLPA----DPTKEGYTFAGWYTDSDGTTKYTFGTDVTPTGDITLYA 64
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 1556-1600 1.50e-05

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 44.54  E-value: 1.50e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 806921365  1556 YTITFNPNGGVNPTipSNLAGYNVTDLPldvnlTPTRLGYTFKGW 1600
Cdd:pfam09479    1 YTVTFDANGGTVSQ--TVTYGTTITLPA-----DPTKEGYTFAGW 38
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1195-1239 1.88e-05

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 43.77  E-value: 1.88e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*
gi 806921365  1195 ATKPGFTFVGWEQGAGASGGPAITIPKvsSSHAHQTYKAIWTSNA 1239
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPS--GSTGDLTLYAKWTPNT 43
RhsA COG3209
Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction ...
 367-1125 3.49e-05

Uncharacterized conserved protein RhaS, contains 28 RHS repeats [General function prediction only];


Pssm-ID: 442442 [Multi-domain]  Cd Length: 1103  Bit Score: 49.37  E-value: 3.49e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  367 TLHNGTAQQGTHFTYVKGVTIPAGDYNTAKEITLNNITIKDNTTCNNDLTFQISIDDPGQCNDLIRKSPTNNQATVTIRD 446
Cdd:COG3209    17 LLAATNAGGGTAVTNAGSTVLLAKGGLSTAAAAGGAATLTARSASTTDVVGTLTGAGGTSAGGVTALGDASAAGGGYVGG 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  447 DEVHPAITTNLPNLEYHYGQTVPAITFATNPTNATVTWTNSNTSIGLNSSSGNGNLPSFTAKNESSAPIMATITATPQGI 526
Cdd:COG3209    97 AAAGGGATLTGLAAATASAGRLVSTGAGAGGTVTAATGGTLGATAGSATTGSTDGGRGGVAVTGLAGGGASAYGLTLGGA 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  527 CPGAPKTFTIKVHPKLKITYDYNGGTAPTTSNPATYLYDQSMTIQNEPTRKGYTFKGWTCQELNITTPAKPFVIPAHTDK 606
Cdd:COG3209   177 AAGPATGVGTGAVTLATGLAGSALLALGSGAILGGLAGAYSGSATTATGTALGTPASVAATVTGSATGAAGAGAAVATAA 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  607 NLTLRADWGLDSYTITYTLDGGVVEGGSNPTLYDVNTPSFSLRAPRKPGFTFTGWTGSNGTSPSTSVSIPQGSTGNKNYT 686
Cdd:COG3209   257 TTLGGTTGAGTGASGAGLDASTGTGGAGGSNAAATAGGLGGAGLGSGGAGGGGTAGGTTTAAGTTGTAAVSGAADAGTTT 336

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  687 ANWTENTYTISYNYNSGNAPASPNKANYKITEVPFDINSTATANQPTRTGYDFTGWTGPNATSVTKTVHVTNAVFLPTGD 766
Cdd:COG3209   337 TTGTGTGGTTTTVGGGGSLTLGGYGAAGGLTTSVGAGGGGSTSGSTTTVGGGGTATGSGGGSSTTGVGAGTTTTSTTGGD 416

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  767 PQNLSYTANWTPINYTLTYHLNGGTASNPTNYTIESAELSLNRPTRSGYTFAGWSGTELSGQVMDVRIPRGSTGNREYTA 846
Cdd:COG3209   417 GGPATAAGALTAGGTATGTGTGGGGTTAGTDATTTTGGAGASGTLTTTGGAATGATTGGGTEAGTGGGTLTSGSAGATTL 496

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  847 NWTPINYTITYLDGSATITVPGAPTQFNDPQLPLTINNEPTKPGWTFTGWTGGAGADGGKVITIPNNTHANQSYTATWSS 926
Cdd:COG3209   497 GTDTTLDDTLGGTTTTTAGARGLVVTTGTTLTLGTTTTATLSATDATGTGDTTTTGTVGTGTSTGTGGTGTVTTTGDGTG 576

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  927 IAYTITFNPNGGVNPTIQPNWTSYDMSKLPLSGVSVTPTRTGYTFNGWTGHGLTNHKAPFTIASTTNGVPGNLTYTAQWT 1006
Cdd:COG3209   577 GASTTTGTTGGTATTTTVTTTTTTSTAGTTTTTTSGYTRAGLTLTLGTGTASGLERATASTGSTTGGTTGTGVTTTGTTT 656

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1007 LDTYNLNYDLGGGTVATANPATYTYTTSTITLNNPTRTGYTFAGWTGTGIVGTSMSVQIPQGSVGHRSYTATWTADRYTI 1086
Cdd:COG3209   657 TRATGTTGTGTGVTAGLTTLATGGTTVGGGTGTTSTATTGATTGGTETGTTVTTLAGGTTTRLGTTTTGGGGGTTTDGTG 736

                         730       740       750
                  ....*....|....*....|....*....|....*....
gi 806921365 1087 TYDLAEGTVTTPNPDEYYVTTPTITlhnptrsgYTFAGW 1125
Cdd:COG3209   737 TGGTTGTLTTTSTTTTTTAGALTYT--------YDALGR 767
List_Bact_rpt TIGR02543
Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues ...
 1275-1320 4.54e-05

Listeria/Bacterioides repeat; This model describes a conserved core region, about 43 residues in length, of at least two families of tandem repeats. These include 78-residue repeats from 2 to 15 in number, in some proteins of Bacteroides forsythus ATCC 43037, and 70-residue repeats in families of internalins of Listeria species. Single copies are found in proteins of Fibrobacter succinogenes, Geobacter sulfurreducens, and a few bacteria. [Unknown function, General]


Pssm-ID: 274189 [Multi-domain]  Cd Length: 43  Bit Score: 42.61  E-value: 4.54e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 806921365  1275 PTYRGYTFAGWNGHGLTNQTAPFNITSstnGVPGNLTYIAQWNIIT 1320
Cdd:TIGR02543    1 PTKTGYTFVGWTGDSTGTPVKNFTIPS---GSTGDLTLYAKWTPNT 43
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 892-1375 5.54e-05

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 48.62  E-value: 5.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  892 TFTGWTGGAGADGGKVITIPNNTHANQSYTATWSSIAYTITFNPNGGVNPTIQPNWTSYDMSKLPLSGVSVTPTRTGYTF 971
Cdd:COG4625     2 GGGGGGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGGG 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  972 NGWTGHGLTNHKAPFTIASTTNGVPGNLTYTAQWTLDTYNLNYDLGGGTVATANPATYTYTTSTITLNNPTRTGYTFAGW 1051
Cdd:COG4625    82 GGGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGAG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1052 TGTGIVGTSMSVQIPQGSVGHRSYTATWTADRYTITYDLAEGTVTTPNPDEYYVTTPTITLHNPTRSGYTFAGWTGTGIS 1131
Cdd:COG4625   162 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGG 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1132 GSSMSVQIPLGSTGNRTYTATW------TPITYTIKYVDDDGATVLTTVSAGAPTQFNDTELPKTFSVTATKPGFTFVGW 1205
Cdd:COG4625   242 GGGGGGAGGGGGGGGGNGGGGGagggggGGGGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1206 EQGAGASGGPAITIPKVSSSHAHQTYKAIWTSNAYTITFNANGGINPSIPSIWTGYDMPKLPLNNVSVTPTYRGYTFAGW 1285
Cdd:COG4625   322 GGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGGGGAGGGGG 401

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1286 NGHGLTNQTAPFNITSSTNGVPGNLTYIAQWNIITYNITYTLAGGTVSPTNPASYQVTTPAITLNNPTRTGYAFAGWTGT 1365
Cdd:COG4625   402 GGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGAGTLTLTGN 481

                         490
                  ....*....|
gi 806921365 1366 DLTTPSTSVT 1375
Cdd:COG4625   482 NTYTGTTTVN 491
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 929-1004 1.06e-04

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 42.23  E-value: 1.06e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 806921365   929 YTITFNPNGGVNPTIQPNWTSYDMSKlplsgvsvTPTRTGYTFNGW-TGHGLTNhKAPFTIASTTNgvpGNLTYTAQ 1004
Cdd:pfam09479    1 YTVTFDANGGTVSQTVTYGTTITLPA--------DPTKEGYTFAGWyTDSDGTT-KYTFGTDVTPT---GDITLYAK 65
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 1240-1315 2.32e-04

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 41.46  E-value: 2.32e-04
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 806921365  1240 YTITFNANGGINPsiPSIWTGYDMPKLPlnnvsvTPTYRGYTFAGWNghglTNQTAPFNITSSTNGVP-GNLTYIAQ 1315
Cdd:pfam09479    1 YTVTFDANGGTVS--QTVTYGTTITLPA------DPTKEGYTFAGWY----TDSDGTTKYTFGTDVTPtGDITLYAK 65
COG4625 COG4625
Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function ...
 1145-1657 4.43e-04

Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown];


Pssm-ID: 443664 [Multi-domain]  Cd Length: 900  Bit Score: 45.54  E-value: 4.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1145 GNRTYTATWTPITYTIKYVDDDGATVLTTVSAGAPTQFNDTELPKTFSVTATKPGFTFVGWEQGAGASGGPAITIPKVSS 1224
Cdd:COG4625     1 GGGGGGGGGGGGGGGGTGGGGAGGGGGAGGGAGGGGAGGGGGGGGGGGGAGGGGGGGGTGGGGGGGGGGGGGGAGGGGGG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1225 SHAHQTYKAIWTSNAYTITFNANGGINPSIPSIWTGYDMPKLPLNNVSVTPTYRGYTFAGWNGHGLTNQTAPFNITSSTN 1304
Cdd:COG4625    81 GGGGGGGGGTGGVGGGGGGGGGGGGGGGGGGGGGGGGSAGGGGGGAGGAGGGGGGGAGGGGGGGGGGGAGGGGGGGAGGA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1305 GVPGNLTYIAQWNIITYNITYTLAGGTVSPTNPASYQVTTPAITLNNPTRTGYAFAGWTGTDLTTPSTSVTIPTGSIGDR 1384
Cdd:COG4625   161 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1385 NYTATWSENGYTITYNLNNGMAPATPNKATFkitevpfVINTTAPANQPTRTGYDFTGWTGHDLTVANKTINVQASTFST 1464
Cdd:COG4625   241 GGGGGGGAGGGGGGGGGNGGGGGAGGGGGGG-------GGGSGGGGGGGGGGGSGGGGGGGGGGGGGGGGGGGGGGGGGG 313

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1465 PGTPENLTYTAHWNPITYTIHYTLDHGTEGAGHVTSYTVETATFNLVPPTRTGWTFVGWTGSNGSVPQTTVTVPQGSTGD 1544
Cdd:COG4625   314 GGGGGGGGGGGGGGGGGGGGAGGGGGSGGAGAGGGGAGGGGAGGGGGGGTGGGGGGGGGGGGGSGGGGAGGGGGSGGGGG 393

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1545 LNYTAHWSANAYTITFNPNGGVNPTIPSNLAGYNVTDLPLDVNLTPTRLGYTFKGWTGHGLPGTPDPFRIENTTPGVPGN 1624
Cdd:COG4625   394 GGAGGGGGGGGAGGTGGGGAGGGGGAAGGGGGGTGAGGGGGGGGTGAGGGGATGGGGGGGGGAGGSGGGAGAGGGSGSGA 473

                         490       500       510
                  ....*....|....*....|....*....|...
gi 806921365 1625 LTFTATWDLNNYTLHYHLNGGVHVPGNPSTYNV 1657
Cdd:COG4625   474 GTLTLTGNNTYTGTTTVNGGGNYTQSAGSTLAV 506
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 1395-1476 1.66e-03

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 38.76  E-value: 1.66e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  1395 YTITYNLNNGMAPATpnkatfkiteVPFVINTTAPANqPTRTGYDFTGW-TGHDLTVANktinvqasTFSTPGTP-ENLT 1472
Cdd:pfam09479    1 YTVTFDANGGTVSQT----------VTYGTTITLPAD-PTKEGYTFAGWyTDSDGTTKY--------TFGTDVTPtGDIT 61


                   ....
gi 806921365  1473 YTAH 1476
Cdd:pfam09479   62 LYAK 65
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 1010-1051 3.20e-03

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 37.99  E-value: 3.20e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 806921365  1010 YNLNYDLGGGTVATANPATYTYTTstitLNNPTRTGYTFAGW 1051
Cdd:pfam09479    1 YTVTFDANGGTVSQTVTYGTTITL----PADPTKEGYTFAGW 38
Flg_new_2 pfam18998
Divergent InlB B-repeat domain; This family of domains are found in bacterial cell surface ...
 1321-1394 3.86e-03

Divergent InlB B-repeat domain; This family of domains are found in bacterial cell surface proteins. They are often found in tandem array. This domain is closely related to pfam09479.


Pssm-ID: 436898 [Multi-domain]  Cd Length: 74  Bit Score: 38.10  E-value: 3.86e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 806921365  1321 YNITYT-LAGGTVSPTNPASYQVTTpaITLNNPTRTGYAFAGWT----GTDLTTPSTSVTIPTgsiGDRNYTATWSENG 1394
Cdd:pfam18998    1 YTVTVTaGAGGTVTGSSGTYAEGTT--VTLTATPDSGYEFTGWTgdagGTDATSANTTFTMPA---ANVTVTATFEAIG 74
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 619-687 6.76e-03

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 37.22  E-value: 6.76e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365   619 YTITYTLDGGvveggSNPTLYDVNTPSFSLRAPRKPGFTFTGW-TGSNGTSPSTSvSIPQGSTGNKNYTA 687
Cdd:pfam09479    1 YTVTFDANGG-----TVSQTVTYGTTITLPADPTKEGYTFAGWyTDSDGTTKYTF-GTDVTPTGDITLYA 64
Flg_new pfam09479
Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core ...
 1482-1550 7.84e-03

Listeria-Bacteroides repeat domain (List_Bact_rpt); This model describes a conserved core region of about 43 residues which occurs in more than 400 mostly secreted or cell surface-located proteins from over 300 eubacterial and few archaeal species. These proteins contain between one and 34 copies of the domain that often occur in tandem arrays with up to more than 20 copies.


Pssm-ID: 462813 [Multi-domain]  Cd Length: 65  Bit Score: 36.84  E-value: 7.84e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  1482 YTIHYTLDHGTEgaghVTSYTVETATFNLVPPTRTGWTFVGW-TGSNGSVPQTTVTvPQGSTGDLNYTAH 1550
Cdd:pfam09479    1 YTVTFDANGGTV----SQTVTYGTTITLPADPTKEGYTFAGWyTDSDGTTKYTFGT-DVTPTGDITLYAK 65
FhaB COG3210
Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, ...
 879-1637 8.20e-03

Large exoprotein involved in heme utilization or adhesion [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 442443 [Multi-domain]  Cd Length: 1698  Bit Score: 41.68  E-value: 8.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  879 PLTINNEPTKPGWTFTGWTGGAGADGGKVITIPNNTHANQSYTATWSSIAYTITFNPNGGVNPTIQpnwTSYDMSKLPLS 958
Cdd:COG3210   809 TTAINVTGSGGTITINTATTGLTGTGDTTSGAGGSNTTDTTTGTTSDGASGGGTAGANSGSLAATA---ASITVGSGGVA 885

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365  959 GVSVTPTRTGYTFNGWTGHGLTNHKAPFTIASTTNGVPGNLTYTAQWTLDTYNLNYDLGGGTVATANPATYTYTTSTITL 1038
Cdd:COG3210   886 TSTGTANAGTLTNLGTTTNAASGNGAVLATVTATGTGGGGLTGGNAAAGGTGAGNGTTALSGTQGNAGLSAASASDGAGD 965

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1039 NNPTRTGYTFAGWTGTGIVGTSMSVQIPQGSVGHRSYTATWTADRYTITYDLAEGTVTTPNPDEYYVTTPTITLHNPTRS 1118
Cdd:COG3210   966 TGASSAAGSSAVGTSANSAGSTGGVIAATGILVAGNSGTTASTTGGSGAIVAGGNGVTGTTGTASATGTGTAATAGGQNG 1045

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1119 GYTFAGWTGTGISGSSMSVQIPLGSTGNRTYTATWTPITYTIKYVDDDGATVLTTVSAGAPTQFNDTELPKTFSVTATKP 1198
Cdd:COG3210  1046 VGVNASGISGGNAAALTASGTAGTTGGTAASNGGGGTAQASGAGTTHTLGGITNGGATGTSGGTTTSTGGVTASKVGGTT 1125

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1199 GFTFVGWEQGAGASGGPAITIPKVSSSHAHQTYKAIWTSNAYTITFNANGGINPSIPSIWTGYDMPKLPLNNVSVTPTYR 1278
Cdd:COG3210  1126 TVGATGTSTASTEAAGAGTLTGLVAVSAVAGGASSASAGDTTAVAAATTTTTGSAINGGADSAATEGTAGTDLKGGDSTG 1205

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1279 GYTFAGWNGHGLTNQTAPFNITSSTNGVPGNLTYIAQWNIITYNITYTLAGGTVSPTNPASYQVTTPAITLNNPTRTGYA 1358
Cdd:COG3210  1206 GSTTTIGTTNVTTTTTLTASDTGNTTATGGSSAGQTGSFVAAGSASGTGDATTGATAGAVSNGATSTVAGNAGATATGST 1285

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1359 FAGWTGTDLTTPSTSVTIPTGSIGDRNYTATWSENGYTITYNLNNGMAPATPNKATFKITEVPFVINTTAPANQPTRTGY 1438
Cdd:COG3210  1286 VDIGSTSATSAGGSLDTTGNTAGANGATVGTGIGGTTATGTAVAAVNSGGVNAGGGTINTTAANTGLNGGNGATDSAAGA 1365

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1439 DFTGWTGHDLTVANKTINVQASTFSTPGTPENLTYTAHWNPITYTIHYTLDHGTEGAGHVTSYTVETATFNLVPPTRTGW 1518
Cdd:COG3210  1366 GSGGAAGSLAATAGAGTVLTGAGNNTGAEGTNAGRDGGVTTSGTGVGNNGGVSGTTVAGTTGSSATTGTGGTGNTTGTSV 1445

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 806921365 1519 TFVGWTGSNGSVPQTTVTVPQGSTGDLNYTAHWSANAYTITFNPNGGVNPTIPSNLAGYNVTDLPLDVNLTPTRLGYTFK 1598
Cdd:COG3210  1446 AGAGGGNADASAINTGNASSLGAGGSTAGNAVGGAVIGGTTTGGNGAGVAGATASNGGTSTGAGGTAGGTTAEVAKASLE 1525

                         730       740       750
                  ....*....|....*....|....*....|....*....
gi 806921365 1599 GWTGHGLPGTPDPFRIENTTPGVPGNLTFTATWDLNNYT 1637
Cdd:COG3210  1526 GGEGTYGGSSVAEAGTGGGILGAVSGAGSEGGAAGGVTG 1564
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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