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Conserved domains on  [gi|512380141|dbj|BAN51605|]
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hypothetical protein PCA10_p2210 (plasmid) [Metapseudomonas resinovorans NBRC 106553]

Protein Classification

NIPSNAP family protein( domain architecture ID 10284087)

NIPSNAP family protein similar to Drosophila melanogaster protein NipSnap and vertebrate homologs, which may be involved in vesicular trafficking

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NIPSNAP pfam07978
NIPSNAP; Members of this family include many hypothetical proteins. It also includes members ...
 106-203 3.42e-32

NIPSNAP; Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.


:

Pssm-ID: 429767  Cd Length: 102  Bit Score: 112.04  E-value: 3.42e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512380141  106 YELRVYDLVPAGLAPTLKGWENAVGPRTGPGYSPVYAAFYATDGRLPRYLHIWPYASLEQRLDVRTRAVQDGVW----PP 181
Cdd:pfam07978   1 YELRTYRLKPGKLAEFLENFARAIGARQAKHGGELIGYFTSEIGPLNQVYHLWAYASLAEREARRAALAADPGWeanvEE 80

                          90       100
                  ....*....|....*....|..
gi 512380141  182 ENSGPQLRDMHSAVYLPAPFSP 203
Cdd:pfam07978  81 TVPLGFIRRMESRILRPTPFSP 102
NIPSNAP super family cl46801
NIPSNAP; Members of this family include many hypothetical proteins. It also includes members ...
 4-69 1.68e-10

NIPSNAP; Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.


The actual alignment was detected with superfamily member pfam07978:

Pssm-ID: 481141  Cd Length: 102  Bit Score: 55.80  E-value: 1.68e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512380141    4 YELMTFTVRVRTVTPAMACLE----PRLAQAGGTLMGCWASEIGPLNQITVLRGFADEGARQAERERYLA 69
Cdd:pfam07978   1 YELRTYRLKPGKLAEFLENFAraigARQAKHGGELIGYFTSEIGPLNQVYHLWAYASLAEREARRAALAA 70
 
Name Accession Description Interval E-value
NIPSNAP pfam07978
NIPSNAP; Members of this family include many hypothetical proteins. It also includes members ...
 106-203 3.42e-32

NIPSNAP; Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.


Pssm-ID: 429767  Cd Length: 102  Bit Score: 112.04  E-value: 3.42e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512380141  106 YELRVYDLVPAGLAPTLKGWENAVGPRTGPGYSPVYAAFYATDGRLPRYLHIWPYASLEQRLDVRTRAVQDGVW----PP 181
Cdd:pfam07978   1 YELRTYRLKPGKLAEFLENFARAIGARQAKHGGELIGYFTSEIGPLNQVYHLWAYASLAEREARRAALAADPGWeanvEE 80

                          90       100
                  ....*....|....*....|..
gi 512380141  182 ENSGPQLRDMHSAVYLPAPFSP 203
Cdd:pfam07978  81 TVPLGFIRRMESRILRPTPFSP 102
NIPSNAP pfam07978
NIPSNAP; Members of this family include many hypothetical proteins. It also includes members ...
 4-69 1.68e-10

NIPSNAP; Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.


Pssm-ID: 429767  Cd Length: 102  Bit Score: 55.80  E-value: 1.68e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512380141    4 YELMTFTVRVRTVTPAMACLE----PRLAQAGGTLMGCWASEIGPLNQITVLRGFADEGARQAERERYLA 69
Cdd:pfam07978   1 YELRTYRLKPGKLAEFLENFAraigARQAKHGGELIGYFTSEIGPLNQVYHLWAYASLAEREARRAALAA 70
 
Name Accession Description Interval E-value
NIPSNAP pfam07978
NIPSNAP; Members of this family include many hypothetical proteins. It also includes members ...
 106-203 3.42e-32

NIPSNAP; Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.


Pssm-ID: 429767  Cd Length: 102  Bit Score: 112.04  E-value: 3.42e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512380141  106 YELRVYDLVPAGLAPTLKGWENAVGPRTGPGYSPVYAAFYATDGRLPRYLHIWPYASLEQRLDVRTRAVQDGVW----PP 181
Cdd:pfam07978   1 YELRTYRLKPGKLAEFLENFARAIGARQAKHGGELIGYFTSEIGPLNQVYHLWAYASLAEREARRAALAADPGWeanvEE 80

                          90       100
                  ....*....|....*....|..
gi 512380141  182 ENSGPQLRDMHSAVYLPAPFSP 203
Cdd:pfam07978  81 TVPLGFIRRMESRILRPTPFSP 102
NIPSNAP pfam07978
NIPSNAP; Members of this family include many hypothetical proteins. It also includes members ...
 4-69 1.68e-10

NIPSNAP; Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family which have putative roles in vesicular transport. This domain is often found in duplicate.


Pssm-ID: 429767  Cd Length: 102  Bit Score: 55.80  E-value: 1.68e-10
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 512380141    4 YELMTFTVRVRTVTPAMACLE----PRLAQAGGTLMGCWASEIGPLNQITVLRGFADEGARQAERERYLA 69
Cdd:pfam07978   1 YELRTYRLKPGKLAEFLENFAraigARQAKHGGELIGYFTSEIGPLNQVYHLWAYASLAEREARRAALAA 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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