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Conserved domains on  [gi|254674569|dbj|BAH86117|]
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NADH dehydrogenase subunit 6 (mitochondrion) [Branchiostoma belcheri]

Protein Classification

NADH dehydrogenase subunit 6( domain architecture ID 10009628)

NADH dehydrogenase subunit 6 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-163 6.26e-26

NADH dehydrogenase subunit 6; Provisional


:

Pssm-ID: 214461  Cd Length: 168  Bit Score: 96.98  E-value: 6.26e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254674569   1 MQLLLIFTILLATMMVIRAPSPYYGALATAWLALLASILMLSMNVIFPAIILMLIYLGGMLVVFIYSTAYSADLMPLP-- 78
Cdd:MTH00214   4 FVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESwg 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254674569  79 -VSMTTTILTAALGTILIIMIMMPSIETFcetkTWLLYSSEPSY---LLYDIYERGTATFIFATVILTVLLFSILELVSH 154
Cdd:MTH00214  84 gWSVLLFFLFYLLGLGFVGFYFYGGWEML----SWMGVDEANNLdlsGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVRG 159


                 ....*....
gi 254674569 155 RQTATKWFI 163
Cdd:MTH00214 160 LSRGALRVV 168
 
Name Accession Description Interval E-value
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-163 6.26e-26

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 96.98  E-value: 6.26e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254674569   1 MQLLLIFTILLATMMVIRAPSPYYGALATAWLALLASILMLSMNVIFPAIILMLIYLGGMLVVFIYSTAYSADLMPLP-- 78
Cdd:MTH00214   4 FVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESwg 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254674569  79 -VSMTTTILTAALGTILIIMIMMPSIETFcetkTWLLYSSEPSY---LLYDIYERGTATFIFATVILTVLLFSILELVSH 154
Cdd:MTH00214  84 gWSVLLFFLFYLLGLGFVGFYFYGGWEML----SWMGVDEANNLdlsGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVRG 159


                 ....*....
gi 254674569 155 RQTATKWFI 163
Cdd:MTH00214 160 LSRGALRVV 168
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
14-112 7.06e-04

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 37.87  E-value: 7.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254674569   14 MMVIRAPSPYYGALATAWLALLASILMLSMNVIFPAIILMLIYLGGMLVVFIYSTAYSADLMPLPVSMTTTILTAALGTI 93
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90
                  ....*....|....*....
gi 254674569   94 LIIMIMMPSIETFCETKTW 112
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAA 99
 
Name Accession Description Interval E-value
ND6 MTH00214
NADH dehydrogenase subunit 6; Provisional
 1-163 6.26e-26

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214461  Cd Length: 168  Bit Score: 96.98  E-value: 6.26e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254674569   1 MQLLLIFTILLATMMVIRAPSPYYGALATAWLALLASILMLSMNVIFPAIILMLIYLGGMLVVFIYSTAYSADLMPLP-- 78
Cdd:MTH00214   4 FVFLLMFGFLLGLMMVASSPSPYFGALGLVLLALLGCFLLLSHGNSFLGLILFLIYLGGMLVVFSYSAALAADPYPESwg 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254674569  79 -VSMTTTILTAALGTILIIMIMMPSIETFcetkTWLLYSSEPSY---LLYDIYERGTATFIFATVILTVLLFSILELVSH 154
Cdd:MTH00214  84 gWSVLLFFLFYLLGLGFVGFYFYGGWEML----SWMGVDEANNLdlsGVSDLYSRGFFLLLLGGVVLFLVLFVVLELVRG 159


                 ....*....
gi 254674569 155 RQTATKWFI 163
Cdd:MTH00214 160 LSRGALRVV 168
ND6 MTH00115
NADH dehydrogenase subunit 6; Provisional
 3-76 7.28e-13

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214424  Cd Length: 174  Bit Score: 62.84  E-value: 7.28e-13
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 254674569   3 LLLIFTILLATMMVIRAPSPYYGALATAWLALLASILMLSMNVIFPAIILMLIYLGGMLVVFIYSTAYSADLMP 76
Cdd:MTH00115   6 FLLGVCFVLGVVGVASNPSPYYGVVSLVLASVFGCGVLVSLGGSFVSLVLFLVYLGGMLVVFAYSVSLAADPYP 79
ND6 MTH00045
NADH dehydrogenase subunit 6; Validated
 4-151 7.23e-11

NADH dehydrogenase subunit 6; Validated


Pssm-ID: 177120  Cd Length: 162  Bit Score: 57.22  E-value: 7.23e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254674569   4 LLIFTILLATMMVIRAPSPYYGALATAWLALLASILMLSMNVIFPAIILMLIYLGGMLVVFIYSTAYSADLMPLPVSMTT 83
Cdd:MTH00045   5 LFLILMLFGSTLVFYSLSPYYSALGLVLVSLSGCLLLSLLGLSFLALLLLLIYMGGMLVVFVYSSALSAERYPSVSNLGE 84

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 254674569  84 TILTAALGTILIIMIMMPSIETFceTKTWLLYSSEPSYLLYDIYERGTATFIFATVILTVLLFSILEL 151
Cdd:MTH00045  85 VLVLSLLLSLWVFISFDNFLELS--NNNWSLVSLSDLVGSSELYNSGGLYLLLGGFILLVALVVALVI 150
ND6 MTH00138
NADH dehydrogenase subunit 6; Provisional
 47-76 2.55e-07

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 177196  Cd Length: 173  Bit Score: 47.83  E-value: 2.55e-07
                         10        20        30
                 ....*....|....*....|....*....|
gi 254674569  47 FPAIILMLIYLGGMLVVFIYSTAYSADLMP 76
Cdd:MTH00138  50 FLSLVLFLIYLGGMLVVFAYSAALAAEPYP 79
ND6 MTH00065
NADH dehydrogenase subunit 6; Provisional
 1-76 3.30e-06

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214415  Cd Length: 172  Bit Score: 44.84  E-value: 3.30e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 254674569   1 MQLLLIFTILLATMMVIRAPSPYYGALATAWLALLASILMLSMNVIFPAIILMLIYLGGMLVVFIYSTAYSADLMP 76
Cdd:MTH00065   4 LGFLGMLGLVVGLVAVASNPSPYFAALGLVLGAVCGCLVLVELGVSFLSLVLFLIYLGGMLVVFAYSAALAAEPYP 79
ND6 MTH00109
NADH dehydrogenase subunit 6; Provisional
 1-130 2.04e-04

NADH dehydrogenase subunit 6; Provisional


Pssm-ID: 214421  Cd Length: 175  Bit Score: 39.79  E-value: 2.04e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254674569   1 MQLLLIFTILLATMMVIRA--PSPYYGALATAWLALLASILMLSMNVIFPAIILMLIYLGGMLVVFIYSTAYSADLMPLP 78
Cdd:MTH00109   3 MYIVFILSVLFVLGFVGFSskPSPIYGGLGLIVSGGVGCGIVLSFGGSFLGLMVFLIYLGGMLVVFGYTTAMATEEYPET 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 254674569  79 VSMTTTILTAALGTILIIMIMMPSIETFCETKTWLLYSSEPSYLLYDIYERG 130
Cdd:MTH00109  83 WVSNKVVLGALLLGLLMELLLVLYVLKDDEVEVVFNFNGLGDWVIYDTGGSG 134
Oxidored_q3 pfam00499
NADH-ubiquinone/plastoquinone oxidoreductase chain 6;
14-112 7.06e-04

NADH-ubiquinone/plastoquinone oxidoreductase chain 6;


Pssm-ID: 459832 [Multi-domain]  Cd Length: 141  Bit Score: 37.87  E-value: 7.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 254674569   14 MMVIRAPSPYYGALATAWLALLASILMLSMNVIFPAIILMLIYLGGMLVVFIYSTAYSADLMPLPVSMTTTILTAALGTI 93
Cdd:pfam00499   1 LGVVTSRNPVHSALFLVLTFFGVAGLYLLLGAEFLAAVQVLVYVGAIMVLFLFVIMLLLAEEEPEKLRSGLPLAALLLGL 80

                          90
                  ....*....|....*....
gi 254674569   94 LIIMIMMPSIETFCETKTW 112
Cdd:pfam00499  81 LLLALLLLVLLSASLTPAA 99
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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