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Conserved domains on  [gi|221045342|dbj|BAH14348|]
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unnamed protein product [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06075 super family cl21493
NADH-quinone oxidoreductase subunit D;
1-231 1.38e-145

NADH-quinone oxidoreductase subunit D;


The actual alignment was detected with superfamily member PRK06075:

Pssm-ID: 473883 [Multi-domain]  Cd Length: 392  Bit Score: 411.47  E-value: 1.38e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   1 MELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEIT 80
Cdd:PRK06075  26 LELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVEKLLGIEVPERAQYIRVLFLELN 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342  81 RLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDEL 160
Cdd:PRK06075 106 RILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDLPDGLLEDIRDFLDYFPKRLDDY 185

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221045342 161 EELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:PRK06075 186 ETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELDFDVPVGKNGDCYDR 256
 
Name Accession Description Interval E-value
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
1-231 1.38e-145

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 411.47  E-value: 1.38e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   1 MELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEIT 80
Cdd:PRK06075  26 LELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVEKLLGIEVPERAQYIRVLFLELN 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342  81 RLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDEL 160
Cdd:PRK06075 106 RILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDLPDGLLEDIRDFLDYFPKRLDDY 185

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221045342 161 EELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:PRK06075 186 ETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELDFDVPVGKNGDCYDR 256
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
 1-231 1.57e-138

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 393.67  E-value: 1.57e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   1 MELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEIT 80
Cdd:COG0649   26 LELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLAVEKLLGIEVPERAQYIRVILAELN 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342  81 RLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDEL 160
Cdd:COG0649  106 RIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRRDLPDGFLEKVREFLDYFPKRLDEY 185

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221045342 161 EELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:COG0649  186 EDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDELDFDVPVGTEGDCYDR 256
NuoD TIGR01962
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
 1-231 4.46e-121

NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]


Pssm-ID: 273898  Cd Length: 386  Bit Score: 349.33  E-value: 4.46e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342    1 MELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEIT 80
Cdd:TIGR01962  22 LELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEKLLGIEVPRRAQVIRVMLSELN 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   81 RLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDEL 160
Cdd:TIGR01962 102 RISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLPENWLEEIREFLEQFPKRLRDY 181

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221045342  161 EELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:TIGR01962 182 ETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFDVPVGGNGDCYDR 252
Complex1_49kDa pfam00346
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
96-231 1.83e-79

Respiratory-chain NADH dehydrogenase, 49 Kd subunit;


Pssm-ID: 459772  Cd Length: 270  Bit Score: 239.21  E-value: 1.83e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   96 LGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTI 175
Cdd:pfam00346   1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 221045342  176 DIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:pfam00346  81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTEGDCYDR 136
 
Name Accession Description Interval E-value
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
1-231 1.38e-145

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 411.47  E-value: 1.38e-145
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   1 MELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEIT 80
Cdd:PRK06075  26 LELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVEKLLGIEVPERAQYIRVLFLELN 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342  81 RLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDEL 160
Cdd:PRK06075 106 RILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDLPDGLLEDIRDFLDYFPKRLDDY 185

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221045342 161 EELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:PRK06075 186 ETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELDFDVPVGKNGDCYDR 256
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
 1-231 1.57e-138

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 393.67  E-value: 1.57e-138
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   1 MELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEIT 80
Cdd:COG0649   26 LELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLAVEKLLGIEVPERAQYIRVILAELN 105

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342  81 RLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDEL 160
Cdd:COG0649  106 RIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRRDLPDGFLEKVREFLDYFPKRLDEY 185

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221045342 161 EELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:COG0649  186 EDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDELDFDVPVGTEGDCYDR 256
NuoD TIGR01962
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
 1-231 4.46e-121

NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]


Pssm-ID: 273898  Cd Length: 386  Bit Score: 349.33  E-value: 4.46e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342    1 MELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEIT 80
Cdd:TIGR01962  22 LELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEKLLGIEVPRRAQVIRVMLSELN 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   81 RLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDEL 160
Cdd:TIGR01962 102 RISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLPENWLEEIREFLEQFPKRLRDY 181

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221045342  161 EELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:TIGR01962 182 ETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFDVPVGGNGDCYDR 252
PRK12322 PRK12322
NADH-quinone oxidoreductase subunit D;
3-231 4.06e-90

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 183437 [Multi-domain]  Cd Length: 366  Bit Score: 269.65  E-value: 4.06e-90
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   3 LSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 82
Cdd:PRK12322  28 IDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDYLSAMTNNYVYCHAVETMMGLEVPERAEYLRVIAMELGRI 107

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342  83 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEE 162
Cdd:PRK12322 108 ASHLVWWGTYLLDIGAVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGVKWDAPDGWIEKVKEFVPYMREQLAGYHD 187

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 221045342 163 LLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:PRK12322 188 LVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCTGVNWDLRKDEPYSIYDRFDFDIPVGSVGDCWDR 256
Complex1_49kDa pfam00346
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
96-231 1.83e-79

Respiratory-chain NADH dehydrogenase, 49 Kd subunit;


Pssm-ID: 459772  Cd Length: 270  Bit Score: 239.21  E-value: 1.83e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   96 LGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTI 175
Cdd:pfam00346   1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 221045342  176 DIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:pfam00346  81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTEGDCYDR 136
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 1-231 4.27e-72

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 229.42  E-value: 4.27e-72
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   1 MELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEIT 80
Cdd:PRK11742 211 LQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELF 290

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342  81 RLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDEL 160
Cdd:PRK11742 291 RINSHLLYIGTFIQDVGAMTPVFFAFTDRQKIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLDEY 370

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221045342 161 EELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:PRK11742 371 EKAALRNSILKGRTQGVAAYNAKEALEWGVTGAGLRATGIDFDVRKARPYSGYENFDFEVPVGGNGDCYDR 441
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
1-231 3.62e-69

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 226.20  E-value: 3.62e-69
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   1 MELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEIT 80
Cdd:PRK13292 424 LKLDGEEIVDMDSDIGYHHRGAEKIGERQHWNQFIPYTDRIDYLAGVQNNLAYVNSVETLCGIEVPDRAIYIRVMLSELF 503

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342  81 RLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDEL 160
Cdd:PRK13292 504 RIANHLVWLGTFAADVGAMTPVFYTFTDREKIFDIVEMITGGRMHPAWFRIGGVAEDLPEGWKEAVEAFLRWFPGRLKEY 583

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 221045342 161 EELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:PRK13292 584 EDLLTGNPIFKARLKGVGVITRDEAVEWGISGPNLRACGLAWDLRKKMPYGGYDRFDFEVPTAEGGDCYAR 654
PRK07415 PRK07415
NAD(P)H-quinone oxidoreductase subunit H; Validated
 3-231 1.08e-65

NAD(P)H-quinone oxidoreductase subunit H; Validated


Pssm-ID: 180969 [Multi-domain]  Cd Length: 394  Bit Score: 208.05  E-value: 1.08e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   3 LSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 82
Cdd:PRK07415  32 LDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVNAPEKLANIPVPKRASYIRVIMLELNRI 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342  83 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARM-HAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELE 161
Cdd:PRK07415 112 ANHLLWLGPFLADVGAQTPFFYIFREREMIYDLWEAATGQRLiNNNYFRIGGVAADLPYGWLEKCLDFCDYFGPKIDEYE 191

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342 162 ELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:PRK07415 192 KLITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRKVDHYECYDDFDWDVAWETEGDCLAR 261
ndhH CHL00017
NADH dehydrogenase subunit 7
 3-231 3.51e-62

NADH dehydrogenase subunit 7


Pssm-ID: 176960  Cd Length: 393  Bit Score: 199.15  E-value: 3.51e-62
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   3 LSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL 82
Cdd:CHL00017  32 LDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEQLGNIQVPKRASYIRVIMLELSRI 111

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342  83 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEE 162
Cdd:CHL00017 112 ASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQK 191

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 221045342 163 LLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:CHL00017 192 LITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDEFDWEVQWQKEGDSLAR 260
HycE2 COG3261
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
5-231 6.46e-56

Ni,Fe-hydrogenase III large subunit [Energy production and conversion];


Pssm-ID: 442492 [Multi-domain]  Cd Length: 479  Bit Score: 185.18  E-value: 6.46e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342   5 GEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRldyVSMMC---NEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITR 81
Cdd:COG3261  146 GERILDLEIRLGYVHRGIEKLAEGRDYEQALYLAER---ICGICsvaHALAYCQAVEKAAGIEVPPRAQYLRVILLELER 222

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342  82 LLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELE 161
Cdd:COG3261  223 IHSHLLDLGALANDVGFETLFMQCWRLRERVLDLNEALTGNRVLRGINVPGGVRRDLDPEQLKAILERLDELEEEVKELV 302

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 221045342 162 ELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDR 231
Cdd:COG3261  303 DLFLNDPSVLDRLVGTGVLSKEDARDLGAVGPVARASGVDRDVRRDHPYAAYDELDFKVVTETEGDVYAR 372
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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